View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17227_low_7 (Length: 297)
Name: NF17227_low_7
Description: NF17227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17227_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 13898248 - 13898526
Alignment:
| Q |
1 |
tacaacagagttgaggctagtgaaccatggccctctgaatctacatgttccattatgatgtttaagaatgtcagtgatccattcatacaagttggttttg |
100 |
Q |
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| T |
13898248 |
tacaacatagttgaggctagtgaaccatggccctctgaatctacatgttccattatgatgtttaagaatgtcagtgatccattcatacaggttggttttg |
13898347 |
T |
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| Q |
101 |
agtcctttgattaaataaggcagcattccgaaaataggccaattgggtaggccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatgg |
200 |
Q |
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| T |
13898348 |
agtcctttgattaaataaggcagcattccgaaaataggccaattgggtaggccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatgg |
13898447 |
T |
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| Q |
201 |
ctgcaataataatctcagtgatttggatatttttcaagaggaagatgatgtgagaaaacaagatttctgtggctgcagc |
279 |
Q |
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| T |
13898448 |
ctgcaataataatctcagtgatttggatatttttcaagaggaagatgatgtgagaaaacaagatttctgtggctgcagc |
13898526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 13886937 - 13886680
Alignment:
| Q |
20 |
gtgaaccatggccctctgaatctacatgttccattatgatgtttaagaatgtcagtgatccattcatacaagttggttttgagtcctttgattaaataag |
119 |
Q |
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| T |
13886937 |
gtgaaccatggccctttgaatctaaaggttccattttgatgtttaagtgtttcggttatgccttcatacatgttggttttgagtcctatcattaaggaag |
13886838 |
T |
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| Q |
120 |
gcagcattccgaaaataggccaattgggtaggccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagt |
219 |
Q |
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| T |
13886837 |
gtagcattccaagaataggccaatttgttaggccatgatgtttcttggagtgcaaggcatgaatgattatgaagacaatggatgcaataataatttctat |
13886738 |
T |
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| Q |
220 |
gatttggatatttttcaagaggaagatgatgtgagaaaacaagatttctgtggctgca |
277 |
Q |
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| T |
13886737 |
gatttggatttgttgaaagaggaagagaatgtgagaaaacaagttttctgtggctgca |
13886680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 1035305 - 1035586
Alignment:
| Q |
4 |
aacagagttgaggctagtgaaccatggccctctgaatctacatgttccattatgatgtttaagaatgtcagtgatccattcatacaagttggttttgagt |
103 |
Q |
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| T |
1035305 |
aacatagttgaggctagtgaaccatgcccctctgaatctagatgttccattgtgatgcttaagaatgtcagtgatccattcatacaagtttattttgagt |
1035404 |
T |
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| Q |
104 |
cctttgattaaataaggcagcattccgaaaataggccaattgggtagg------ccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaa |
197 |
Q |
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| T |
1035405 |
cctttgattaaataaggcagcattccaaaaataggccaattggttaggccatgaccatgatgttttttcgatcttaaagaacgaatgaatatgaaaacaa |
1035504 |
T |
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| Q |
198 |
tggctgcaataataatctcagtgatttggatatttttcaagaggaagatgatgtgagaaaacaagatttctgtggctgcagc |
279 |
Q |
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| T |
1035505 |
tggctgcaataataatctcagtgatttgaatatttttcaagaccaagatgatgtgagaaaacaagatttctgtggctgcagc |
1035586 |
T |
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