View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17228_high_10 (Length: 323)
Name: NF17228_high_10
Description: NF17228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17228_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 3745099 - 3744806
Alignment:
| Q |
1 |
cacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacgtgttcgtgattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3745099 |
cacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacgtgttcgtgattg |
3745000 |
T |
|
| Q |
101 |
acatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3744999 |
acatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaagg |
3744900 |
T |
|
| Q |
201 |
tggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttctgct |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3744899 |
tggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttctgct |
3744806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 48303219 - 48303031
Alignment:
| Q |
82 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
181 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||||||||||| || || ||||||||||| |||||||| || |||||| |||||||||| || ||||||| |
|
|
| T |
48303219 |
tcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtgaaaggaaga |
48303120 |
T |
|
| Q |
182 |
gggaagaagagaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgct |
273 |
Q |
| |
|
| ||||||||||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
48303119 |
gagaagaagagaaagaaggtggt---aaatatttgaagatggaaagaagggttggtaagtttatgaggaaatttgtgttaccagagaatgct |
48303031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 10462162 - 10462270
Alignment:
| Q |
82 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
181 |
Q |
| |
|
|||| ||| |||| ||| ||| |||| |||||||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||| ||| |||||||||| |
|
|
| T |
10462162 |
tcattcgtattcgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatgataaagtggttgtgataaccggcgagaggaaga |
10462261 |
T |
|
| Q |
182 |
gggaagaag |
190 |
Q |
| |
|
||||||||| |
|
|
| T |
10462262 |
gggaagaag |
10462270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 10539977 - 10539854
Alignment:
| Q |
67 |
aaggaagatcagaattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataa |
166 |
Q |
| |
|
|||||| |||| || || |||||||||| || || |||| ||| ||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||| |
|
|
| T |
10539977 |
aaggaatatcaaaactcgtacgtgttcgagacagatatgctgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgtggttgtgataa |
10539878 |
T |
|
| Q |
167 |
gcggagagaggaagagggaagaag |
190 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
10539877 |
ccggcgagaggaagagggaagaag |
10539854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 10543543 - 10543464
Alignment:
| Q |
145 |
gatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaaggtggtgcaaagtatttgagaatgga |
224 |
Q |
| |
|
||||| || ||| |||||||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
10543543 |
gatgaaaatgtggttgtgataagtggagaaaggaagagggaagaagaagtagaagaaggtgttaagtatttgagaatgga |
10543464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University