View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17228_high_15 (Length: 306)

Name: NF17228_high_15
Description: NF17228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17228_high_15
NF17228_high_15
[»] chr2 (7 HSPs)
chr2 (1-146)||(19138361-19138506)
chr2 (144-222)||(17164592-17164670)
chr2 (144-222)||(36250577-36250655)
chr2 (223-282)||(19138301-19138360)
chr2 (170-222)||(19877507-19877559)
chr2 (144-222)||(32212942-32213020)
chr2 (142-222)||(24168198-24168278)
[»] chr3 (8 HSPs)
chr3 (144-222)||(24700097-24700175)
chr3 (144-222)||(8485965-8486043)
chr3 (144-220)||(27237964-27238040)
chr3 (144-205)||(54737170-54737231)
chr3 (144-222)||(47425146-47425224)
chr3 (171-222)||(32834615-32834666)
chr3 (178-222)||(25574666-25574710)
chr3 (170-222)||(46225068-46225120)
[»] chr5 (4 HSPs)
chr5 (150-222)||(17042198-17042270)
chr5 (142-221)||(7933407-7933486)
chr5 (142-221)||(34702904-34702982)
chr5 (34-82)||(34693346-34693394)
[»] chr8 (3 HSPs)
chr8 (144-223)||(19177952-19178030)
chr8 (142-222)||(28239295-28239375)
chr8 (144-213)||(12814983-12815053)
[»] chr4 (6 HSPs)
chr4 (144-222)||(5155502-5155580)
chr4 (142-222)||(17722293-17722373)
chr4 (144-222)||(51746198-51746276)
chr4 (144-222)||(2594448-2594526)
chr4 (145-222)||(17641348-17641425)
chr4 (154-222)||(1979391-1979459)
[»] scaffold0234 (1 HSPs)
scaffold0234 (144-222)||(6945-7023)
[»] chr6 (4 HSPs)
chr6 (150-215)||(16548292-16548357)
chr6 (144-221)||(16730436-16730513)
chr6 (144-222)||(21224552-21224629)
chr6 (154-222)||(27966300-27966368)
[»] chr7 (5 HSPs)
chr7 (144-222)||(8981547-8981625)
chr7 (144-224)||(7705932-7706012)
chr7 (144-222)||(31715307-31715385)
chr7 (142-222)||(26263058-26263138)
chr7 (142-222)||(32913690-32913770)
[»] chr1 (2 HSPs)
chr1 (142-222)||(21112740-21112819)
chr1 (142-222)||(21117482-21117562)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 19138506 - 19138361
Alignment:
Q  1 atggcccccttgtgaattgtcaggtgtatgtagttttaatccaagacattaaagacctcatctctcaaaccaatgtctctattactcatattctaataga 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19138506 atggcccccttgtgaattgtcagatgtatgtagttttaatccaagacattaaagacctcatctctcaaaccattgtctctattactcatattctaataga 19138407  T
Q  101 agggaactagtgtgcagattttctggtgaagcttagaacctcatca 146  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||    
T  19138406 agggaactagcgtgcagattttctgatgaagcttagaacctcatca 19138361  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 17164670 - 17164592
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  17164670 tcacctttagttacatcggttgccacccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttatgtagtagtg 17164592  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 36250577 - 36250655
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36250577 tcacccttagttacatcggttggtacccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgtagtagtg 36250655  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 19138360 - 19138301
Alignment:
Q  223 gattctagtttgctaattcatgggtaacattcagaatcctcaatctgctaaggaatgatg 282  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  19138360 gattctagtttgctaattcatgggtaatcttcagaatcctcaatctgctgaggaatgatg 19138301  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 19877507 - 19877559
Alignment:
Q  170 ccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  19877507 ccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttttgtagtagtg 19877559  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 32213020 - 32212942
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||||||||||||  | ||||||| ||| ||||| ||| || ||||||||||||||||||||| ||||||    
T  32213020 tcacctttagttacatcggttgggacccgatgtaaaaagtcgaattccactgatgtgaaatgtcatttctgtagtagtg 32212942  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 24168198 - 24168278
Alignment:
Q  142 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    |||||||||| |||||||| | ||  | ||||||||||| || |||||| || ||||||||||||||||||| | ||||||    
T  24168198 catcacctttcgttacatctggtgggacccgatgtgaaaagttgatttccactgatgtgaaatgtcatttctatagtagtg 24168278  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 24700175 - 24700097
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24700175 tcacctttagttacatcggttggaaaccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgtagtagtg 24700097  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 8486043 - 8485965
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8486043 tcacccttagttacatcggttggtacccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttttgtagtagtg 8485965  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 27237964 - 27238040
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtag 220  Q
    ||||| ||||||||||||||||||| | ||||| ||| |||||||||||||||||| | ||||||||||||| ||||    
T  27237964 tcacccttagttacatcggttgccacctgatgttaaaagtcgatttcaaccgatgtaagatgtcatttctgtagtag 27238040  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 54737231 - 54737170
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatg 205  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||||||||||||| |||||    
T  54737231 tcacccttagttacatcggttggtacccgatgtgaaatgtcgatttcaaccgatgtaaaatg 54737170  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 47425146 - 47425224
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||| ||||||| ||  | ||||||||||| || |||||| || ||||||||||||||||||||| ||||||    
T  47425146 tcacctttagtcacatcggctgggacccgatgtgaaaagttgatttccactgatgtgaaatgtcatttctgtagtagtg 47425224  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 32834666 - 32834615
Alignment:
Q  171 cgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    |||||||||| ||||||||  |||||||||||||||||||||||| ||||||    
T  32834666 cgatgtgaaaagtcgattttgaccgatgtgaaatgtcatttctgtagtagtg 32834615  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 25574666 - 25574710
Alignment:
Q  178 aaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||| || ||||||||||||||||||||| ||||||    
T  25574666 aaatgtcgatttccactgatgtgaaatgtcatttctgtagtagtg 25574710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 46225120 - 46225068
Alignment:
Q  170 ccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||||| ||||| | |||| ||||||||||||| ||| ||||||    
T  46225120 ccgatgtgaaatgtcaatttccatcgatatgaaatgtcatttatgtagtagtg 46225068  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 17042270 - 17042198
Alignment:
Q  150 ttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17042270 ttagttacatcggttggcacccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgtagtagtg 17042198  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 7933486 - 7933407
Alignment:
Q  142 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagt 221  Q
    ||||| ||||||| |||||||||   | |||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  7933486 catcatctttagtgacatcggttaggacccgatgtgaaatatcgattccaaccgatgtgaaatgtcatttctgtagtagt 7933407  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 34702904 - 34702982
Alignment:
Q  142 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagt 221  Q
    |||| |||||||||||||||| ||  | ||||||||||| ||| || | | | |||||||||||||||||||||||||||    
T  34702904 catcgcctttagttacatcggctgggaaccgatgtgaaaagtcaatatta-cagatgtgaaatgtcatttctgttgtagt 34702982  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 34693346 - 34693394
Alignment:
Q  34 ttttaatccaagacattaaagacctcatctctcaaaccaatgtctctat 82  Q
    ||||| ||||| | ||||||||||||||||||||||  |||||||||||    
T  34693346 ttttagtccaaaatattaaagacctcatctctcaaaataatgtctctat 34693394  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 19178030 - 19177952
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtgg 223  Q
    ||||||||| ||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19178030 tcacctttaattacatcggttggta-ccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgtagtagtgg 19177952  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 28239375 - 28239295
Alignment:
Q  142 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||| ||||||||||  | ||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||    
T  28239375 catcacctttagtgacatcggttgggacccgatgtgaaatgtcaatttccactgatgtgaaatgtcatttatgtagtagtg 28239295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 12815053 - 12814983
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtg-aaatgtcgatttcaaccgatgtgaaatgtcatttct 213  Q
    ||||||||||||||||||| || || |||||||| ||| |||||||||||  |||||||||| ||||||||    
T  12815053 tcacctttagttacatcgggtgtcacccgatgtgaaaaagtcgatttcaagtgatgtgaaatctcatttct 12814983  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 5155580 - 5155502
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||||||||||||  | ||||||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  5155580 tcacctttagttacatcggttgggacccgatgtgaaatgtcgatttccactgatgtgaaatgtcatttctgtagtagtg 5155502  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 17722373 - 17722293
Alignment:
Q  142 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    |||||||||||| ||||||||||| || ||||||| ||| || ||||||||||||||||||||||||||||||| ||||||    
T  17722373 catcacctttaggtacatcggttggcacccgatgttaaaagttgatttcaaccgatgtgaaatgtcatttctgtagtagtg 17722293  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 51746198 - 51746276
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    |||||||||||||||||||| |  | ||||||||||| |||| |||| |||||||||||||||||||||||| ||||||    
T  51746198 tcacctttagttacatcggtagggacccgatgtgaaaagtcgttttccaccgatgtgaaatgtcatttctgtagtagtg 51746276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 2594526 - 2594448
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||||||||||||  | ||||||| ||| ||||| ||| || ||||||||||||||||||||| ||||||    
T  2594526 tcacctttagttacatcggttgggacccgatgtaaaaagtcgaattccactgatgtgaaatgtcatttctgtagtagtg 2594448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 17641425 - 17641348
Alignment:
Q  145 cacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    |||||||||| |||||||||   | ||||||||||||||| ||| |||||||||||| ||||||||| ||| ||||||    
T  17641425 cacctttagtgacatcggttaggacccgatgtgaaatgtcaattccaaccgatgtgagatgtcatttatgtagtagtg 17641348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 1979459 - 1979391
Alignment:
Q  154 ttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    |||||||||||| || |||||||||||  ||  ||||||| |||||||||  ||||||||| |||||||    
T  1979459 ttacatcggttgtcaaccgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctgctgtagtg 1979391  T

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Target: scaffold0234 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 6945 - 7023
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||| ||||||||||||||||  | ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  6945 tcacccttagttacatcggttggtacccgatgtgaaatgtcaatttcaatcgatgtgaaatgtcatttctgtagtagtg 7023  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 16548357 - 16548292
Alignment:
Q  150 ttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgt 215  Q
    ||||||||||||||||  | ||||||||||||||||||||||||  ||||||||||||||||||||    
T  16548357 ttagttacatcggttggtacccgatgtgaaatgtcgatttcaactaatgtgaaatgtcatttctgt 16548292  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 16730436 - 16730513
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagt 221  Q
    ||||||||||||||||||| ||  | || |||||||| ||||||||| || ||||| ||||||||||||||| |||||    
T  16730436 tcacctttagttacatcggctgggacccaatgtgaaaagtcgatttccactgatgttaaatgtcatttctgtagtagt 16730513  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 21224629 - 21224552
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||| ||||||| ||  | ||||||||||| ||||||||| || ||||| ||||||||||||||| ||||||    
T  21224629 tcacctttagt-acatcgggtgggacccgatgtgaaaagtcgatttccactgatgttaaatgtcatttctgtagtagtg 21224552  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 27966300 - 27966368
Alignment:
Q  154 ttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||||| | ||||||||| || | ||||||| |||||||||  | |||||||| ||||||    
T  27966300 ttacatcggttgccacctgatgtgaaaagtagttttcaactgatgtgaaaacttatttctgtagtagtg 27966368  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 8981625 - 8981547
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    |||||||||| |||||| ||||  | ||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||    
T  8981625 tcacctttagctacatccgttgggacccgatgtgaaaagtcgattccaaccgatgtggaatgtcatttctgtagtagtg 8981547  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 7706012 - 7705932
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtgga 224  Q
    ||||||||||| ||||||| ||  | ||||||||||||||| ||||| || |||||||||||| |||||||| ||||||||    
T  7706012 tcacctttagtcacatcggctgggacccgatgtgaaatgtcaatttccactgatgtgaaatgtgatttctgtagtagtgga 7705932  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 31715307 - 31715385
Alignment:
Q  144 tcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||||||||||||  | ||||||||||| ||||| ||  || ||||||||||||||||| ||| ||||||    
T  31715307 tcacctttagttacatcggttgggatccgatgtgaaaagtcgaatttcactgatgtgaaatgtcatttttgtagtagtg 31715385  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 26263138 - 26263058
Alignment:
Q  142 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||||||||||| ||  | || |||||||| ||||||||| || |||||||||| |||||| ||| ||||||    
T  26263138 catcacctttagttacatcgggtgggacccaatgtgaaaagtcgatttccactgatgtgaaatttcatttatgtagtagtg 26263058  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 32913770 - 32913690
Alignment:
Q  142 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||||||||||| ||  | ||||| ||||| ||||| ||| ||  |||||||||||||||||||| ||||||    
T  32913770 catcacctttagttacatcgggtgggatccgatttgaaaagtcgaattccactaatgtgaaatgtcatttctgtagtagtg 32913690  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 21112819 - 21112740
Alignment:
Q  142 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||| ||||||| ||  | ||||||||||| || |||||| || ||||| ||||||||||||||| ||||||    
T  21112819 catcacctttagtgacatcgggtggga-ccgatgtgaaaagttgatttccactgatgttaaatgtcatttctgtagtagtg 21112740  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 21117562 - 21117482
Alignment:
Q  142 catcacctttagttacatcggttgccagccgatgtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgttgtagtg 222  Q
    ||||||||||||| ||||||| ||  | ||||||||||| || |||||| || ||||| |||| |||||||||| ||||||    
T  21117562 catcacctttagtgacatcgggtgggacccgatgtgaaaagttgatttccactgatgttaaatatcatttctgtagtagtg 21117482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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