View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17228_high_2 (Length: 400)
Name: NF17228_high_2
Description: NF17228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17228_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 28 - 400
Target Start/End: Original strand, 32062504 - 32062871
Alignment:
| Q |
28 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttt |
127 |
Q |
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| T |
32062504 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttt |
32062603 |
T |
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| Q |
128 |
tcaatccttgccgatgatgatgatgaccccaaacagaaacaaggaggtaagccaatagattttgttcggnnnnnnngattaatgaagcaggagaaagcac |
227 |
Q |
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| T |
32062604 |
tcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcac |
32062703 |
T |
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| Q |
228 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatgtccatctcattgctccttactacgtcctccactaccaaaatcgcga |
327 |
Q |
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| T |
32062704 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatgacc-tcgagcag----aaacaacgtcctccactaccaaaatcgcga |
32062798 |
T |
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| Q |
328 |
ggaaagtcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatga |
400 |
Q |
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| T |
32062799 |
ggaaagtcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatga |
32062871 |
T |
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