View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17228_low_1 (Length: 321)

Name: NF17228_low_1
Description: NF17228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17228_low_1
NF17228_low_1
[»] chr2 (12 HSPs)
chr2 (28-219)||(26861358-26861549)
chr2 (9-185)||(13361728-13361904)
chr2 (38-185)||(10039215-10039362)
chr2 (135-215)||(18985377-18985457)
chr2 (109-219)||(34858332-34858442)
chr2 (109-219)||(34873394-34873504)
chr2 (99-215)||(22497352-22497471)
chr2 (40-184)||(43694228-43694372)
chr2 (38-185)||(21132734-21132881)
chr2 (40-142)||(201448-201550)
chr2 (40-142)||(6743494-6743596)
chr2 (109-204)||(27473258-27473354)
[»] chr8 (11 HSPs)
chr8 (40-185)||(26859384-26859529)
chr8 (51-185)||(42559609-42559743)
chr8 (28-130)||(44432676-44432778)
chr8 (49-185)||(364625-364761)
chr8 (40-185)||(23825967-23826112)
chr8 (144-219)||(10454229-10454305)
chr8 (109-219)||(22237190-22237300)
chr8 (159-208)||(15727649-15727699)
chr8 (40-185)||(3698429-3698574)
chr8 (120-204)||(19807548-19807633)
chr8 (108-215)||(1683074-1683182)
[»] chr5 (11 HSPs)
chr5 (28-185)||(24830079-24830236)
chr5 (28-142)||(21557168-21557282)
chr5 (28-185)||(21554480-21554637)
chr5 (38-185)||(36460795-36460942)
chr5 (27-219)||(14137715-14137906)
chr5 (40-184)||(43242663-43242807)
chr5 (40-184)||(1856633-1856777)
chr5 (38-142)||(22758013-22758117)
chr5 (171-219)||(23909087-23909135)
chr5 (40-184)||(21674603-21674747)
chr5 (144-219)||(13938840-13938917)
[»] chr6 (13 HSPs)
chr6 (81-219)||(19545286-19545424)
chr6 (38-185)||(1254582-1254729)
chr6 (28-181)||(34140711-34140865)
chr6 (28-181)||(34153327-34153481)
chr6 (40-184)||(7430349-7430493)
chr6 (28-142)||(8759641-8759755)
chr6 (40-142)||(8767388-8767490)
chr6 (38-94)||(1113-1169)
chr6 (40-184)||(14593784-14593928)
chr6 (109-219)||(20733384-20733494)
chr6 (38-141)||(34296391-34296495)
chr6 (117-185)||(7680768-7680836)
chr6 (109-204)||(27852008-27852104)
[»] chr4 (14 HSPs)
chr4 (81-219)||(18554862-18555000)
chr4 (81-219)||(13267836-13267974)
chr4 (38-185)||(24046634-24046781)
chr4 (173-217)||(13235155-13235199)
chr4 (156-219)||(13559511-13559574)
chr4 (38-184)||(56114917-56115063)
chr4 (81-219)||(15888680-15888809)
chr4 (125-207)||(20872382-20872466)
chr4 (125-217)||(12230687-12230774)
chr4 (135-215)||(22201302-22201384)
chr4 (114-219)||(10057482-10057587)
chr4 (75-219)||(18453572-18453717)
chr4 (81-219)||(15871105-15871233)
chr4 (144-219)||(9886807-9886885)
[»] chr3 (26 HSPs)
chr3 (81-219)||(22161561-22161699)
chr3 (28-185)||(13520097-13520254)
chr3 (29-185)||(50755483-50755639)
chr3 (144-219)||(21999429-21999504)
chr3 (32-174)||(14479676-14479818)
chr3 (29-185)||(31224034-31224190)
chr3 (144-219)||(21976998-21977073)
chr3 (38-185)||(11913546-11913693)
chr3 (125-215)||(10302604-10302694)
chr3 (28-142)||(19450967-19451081)
chr3 (135-219)||(10340940-10341024)
chr3 (38-185)||(51602679-51602827)
chr3 (28-142)||(19444401-19444515)
chr3 (81-215)||(19186613-19186747)
chr3 (40-185)||(14647184-14647329)
chr3 (150-215)||(27868423-27868488)
chr3 (49-185)||(10988963-10989099)
chr3 (40-185)||(12270633-12270778)
chr3 (40-142)||(14085358-14085460)
chr3 (40-142)||(14090759-14090861)
chr3 (81-219)||(16357977-16358106)
chr3 (40-129)||(30123586-30123675)
chr3 (135-219)||(52988998-52989082)
chr3 (40-184)||(24122409-24122553)
chr3 (40-142)||(8582542-8582644)
chr3 (40-142)||(49400358-49400460)
[»] scaffold0059 (1 HSPs)
scaffold0059 (28-185)||(49440-49597)
[»] scaffold0385 (1 HSPs)
scaffold0385 (144-219)||(16025-16100)
[»] chr7 (12 HSPs)
chr7 (28-185)||(13744857-13745014)
chr7 (28-185)||(36685330-36685487)
chr7 (38-185)||(15214303-15214450)
chr7 (81-219)||(11800121-11800259)
chr7 (28-142)||(30820380-30820494)
chr7 (40-185)||(38828887-38829032)
chr7 (49-185)||(32772165-32772301)
chr7 (156-219)||(9693134-9693197)
chr7 (109-204)||(11091449-11091545)
chr7 (170-219)||(16379171-16379221)
chr7 (40-142)||(19617122-19617224)
chr7 (49-185)||(27565664-27565800)
[»] scaffold0290 (1 HSPs)
scaffold0290 (144-219)||(11993-12068)
[»] scaffold0601 (1 HSPs)
scaffold0601 (9-175)||(4340-4505)
[»] scaffold0379 (1 HSPs)
scaffold0379 (39-185)||(10526-10672)
[»] scaffold0104 (6 HSPs)
scaffold0104 (51-185)||(14688-14822)
scaffold0104 (51-185)||(16708-16842)
scaffold0104 (28-145)||(8033-8151)
scaffold0104 (51-145)||(18728-18822)
scaffold0104 (49-185)||(26762-26898)
scaffold0104 (49-185)||(28144-28280)
[»] scaffold0577 (1 HSPs)
scaffold0577 (28-141)||(8770-8883)
[»] scaffold0635 (1 HSPs)
scaffold0635 (38-185)||(7708-7855)
[»] scaffold0599 (1 HSPs)
scaffold0599 (38-185)||(822-969)
[»] scaffold0118 (1 HSPs)
scaffold0118 (81-219)||(11785-11924)
[»] scaffold0094 (1 HSPs)
scaffold0094 (144-219)||(2641-2716)
[»] scaffold0077 (2 HSPs)
scaffold0077 (38-185)||(17358-17505)
scaffold0077 (38-142)||(22302-22406)
[»] scaffold0026 (1 HSPs)
scaffold0026 (40-184)||(123643-123787)
[»] chr1 (9 HSPs)
chr1 (28-130)||(45496750-45496852)
chr1 (40-185)||(2332213-2332358)
chr1 (40-142)||(42095138-42095240)
chr1 (79-219)||(31343986-31344127)
chr1 (118-196)||(15544149-15544227)
chr1 (40-142)||(21542883-21542985)
chr1 (125-219)||(17451265-17451362)
chr1 (109-219)||(21995804-21995914)
chr1 (159-196)||(21496450-21496487)
[»] scaffold0546 (1 HSPs)
scaffold0546 (38-185)||(9997-10144)
[»] scaffold0109 (1 HSPs)
scaffold0109 (38-185)||(3163-3310)
[»] scaffold0686 (1 HSPs)
scaffold0686 (109-219)||(1241-1351)
[»] scaffold0395 (1 HSPs)
scaffold0395 (135-219)||(11717-11801)
[»] scaffold0153 (2 HSPs)
scaffold0153 (109-205)||(5102-5199)
scaffold0153 (109-205)||(12122-12219)
[»] scaffold0074 (1 HSPs)
scaffold0074 (109-219)||(1740-1850)
[»] scaffold0032 (1 HSPs)
scaffold0032 (120-218)||(68110-68208)
[»] scaffold0106 (1 HSPs)
scaffold0106 (40-142)||(39228-39330)
[»] scaffold0076 (2 HSPs)
scaffold0076 (40-142)||(29393-29495)
scaffold0076 (40-142)||(34794-34896)
[»] scaffold0028 (2 HSPs)
scaffold0028 (40-142)||(46227-46329)
scaffold0028 (40-142)||(51631-51733)
[»] scaffold0011 (1 HSPs)
scaffold0011 (40-142)||(173809-173911)
[»] scaffold0174 (1 HSPs)
scaffold0174 (109-217)||(13439-13547)
[»] scaffold0381 (1 HSPs)
scaffold0381 (144-219)||(11659-11737)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 26861549 - 26861358
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| | ||| ||| ||||| |||     
T  26861549 gaaatcacaaatttttctgcgattttctaccatgggagcctccttggctccgtttttctactctaaattcaccaaaatcatacctaatcttcaccatatt 26861450  T
Q  128 attcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagact-aaaactcaattcaaaaacctaaactag 219  Q
    ||| || |||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  26861449 attaccctatcgttagaacattaattcttcattaacctaccagattatccactctttttaagactaaaaactcaattc-aaaacctaaactag 26861358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 13361728 - 13361904
Alignment:
Q  9 gacatcatcagaccatgaagaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgt 108  Q
    |||| ||| |||||||| ||||| || | ||||||||   ||||| ||||||| |||| || ||| |||||||||||||||||||| || ||||||| ||    
T  13361728 gacagcattagaccatgcagaaaccatagatttttctgtgatttttcaccatgagagcgtcgttgactccgtttttcgaccctaaactcgccaaaattgt 13361827  T
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    |||| ||||||||| ||||||| || ||||||   |||||||||||  |||||| ||||||||||||||||||||||    
T  13361828 ccctaatcatcaccatatgattaccctatcatcgtaacactaattctccattaacctaccagattatccactctttt 13361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 10039362 - 10039215
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| ||||||||||||||||||||||||||| | ||||||||| || |||||||  ||| | ||||||||| ||||||| || |||    
T  10039362 atttttctgcgattttctaccatgggagcctccttggctccgtttcttgaccctaaactctccaaaataatccataatcatcaccatatgattaccctat 10039263  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||| |||  |||| | ||| ||| ||||| ||||| ||||||||||    
T  10039262 cattaaaacgttaatccatcactaacctacctgattaaccactctttt 10039215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 18985457 - 18985377
Alignment:
Q  135 tatcattagaacactaattcctcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaa 215  Q
    |||||||  ||||||||||| || |||| |||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  18985457 tatcattcaaacactaattcttcgttaacctaccagattgtccactctttttaaaactaaaactcaattcgaaaacctaaa 18985377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 34858442 - 34858332
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaa 207  Q
    |||| ||||| ||||||||||  || |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| |||||||||||  |    
T  34858442 ccctaatcattaccctatgatcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-ga 34858344  T
Q  208 aacctaaactag 219  Q
    ||||||||||||    
T  34858343 aacctaaactag 34858332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 34873504 - 34873394
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaa 207  Q
    |||| ||||| ||||||||||  || |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| |||||||||||  |    
T  34873504 ccctaatcattaccctatgatcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-ga 34873406  T
Q  208 aacctaaactag 219  Q
    ||||||||||||    
T  34873405 aacctaaactag 34873394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 22497471 - 22497352
Alignment:
Q  99 ccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagact---aaa 195  Q
    ||||||||| |||| ||| ||||||  ||||| || ||| |||  ||||||||||| || | || |||||| ||||||||||| ||||||| ||   |||    
T  22497471 ccaaaatcgaccctaatcttcaccccgtgattaccctattattcaaacactaattcttcgtcaacctaccatattatccactccttttaaggctaaaaaa 22497372  T
Q  196 actcaattcaaaaacctaaa 215  Q
    ||||||||||||||||||||    
T  22497371 actcaattcaaaaacctaaa 22497352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 43694228 - 43694372
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||||| |||||| ||||||||| ||||||||||||| | | |  |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  43694228 ttttctacgattttctaccatgggaacctccttggctccatctcttaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatca 43694327  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactcttt 184  Q
    ||| |||  |||  | ||| ||| ||||| ||||| |||||||||    
T  43694328 ttaaaacgttaacccatcactaacctacctgattaaccactcttt 43694372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 21132881 - 21132734
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||| | |||||||||||||||||||||||  || |  |||||||| || |||||||| ||| | ||||||||| ||||||  || |||    
T  21132881 atttttctgcgatttcctaccatgggagcctccttggctccaattcttaaccctaaactctccaaaatcatccataatcatcaccatatgatcaccctat 21132782  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||| |||  |||  | ||| ||| ||||| ||||| ||||||||||    
T  21132781 cattaaaacgttaacccatcactaacctacctgattaaccactctttt 21132734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 201448 - 201550
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  201448 ttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 201547  T
Q  140 tta 142  Q
    |||    
T  201548 tta 201550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 6743596 - 6743494
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  6743596 ttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 6743497  T
Q  140 tta 142  Q
    |||    
T  6743496 tta 6743494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 27473258 - 27473354
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattc 204  Q
    |||| ||||| |||||||||   || |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| |||||||||||    
T  27473258 ccctaatcattaccctatgaccaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc 27473354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 26859529 - 26859384
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||| ||||||||| ||||||| || |||||    
T  26859529 ttttctgcaattttccaccatgggagcctcctttgctccgtttctggaccctaaactcaccaaaatcgtccctaatcatcaccatatgatttccctatca 26859430  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||||||| ||||| ||||||| ||||| ||||||||||||||||    
T  26859429 ttagaacaccaattcttcattaacctacccgattatccactctttt 26859384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 42559743 - 42559609
Alignment:
Q  51 tttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacacta 150  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| || |||||||| ||| | ||||||||| || |||| || |||||||  |||  ||    
T  42559743 tttctaccatgggagcctccttggctccgttttttgaccctaaactctccaaaatcatccataatcatcaccatacgattaccctatcattgaaacgtta 42559644  T
Q  151 attcctcattaaactaccagattatccactctttt 185  Q
    || | ||| ||| ||||| ||||| ||||||||||    
T  42559643 atccatcactaacctacccgattaaccactctttt 42559609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 44432676 - 44432778
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||| |||||||| | |||||| ||||||||||||||||||||||| ||| |  |||||||| || |||||||| ||| | ||||||||| ||||    
T  44432676 gaaatcacatatttttctgcgattttctaccatgggagcctccttggctccatttcttaaccctaaactctccaaaatcatccataatcatcaccatatg 44432775  T
Q  128 att 130  Q
    |||    
T  44432776 att 44432778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 364625 - 364761
Alignment:
Q  49 attttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacac 148  Q
    |||||| |||||||||||||| |||||||| ||| |  |||||||| || |||||||| ||| | ||||||||  ||||||| || |||||||| |||      
T  364625 attttctaccatgggagcctctttggctccatttcttaaccctaaactctccaaaatcatccataatcatcacgatatgattaccctatcattaaaacgt 364724  T
Q  149 taattcctcattaaactaccagattatccactctttt 185  Q
    |||| | ||| ||| ||||| ||||| ||||||||||    
T  364725 taatccatcactaacctacctgattaaccactctttt 364761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 23825967 - 23826112
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  23825967 ttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 23826066  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||| |||  ||| || ||| ||| ||||| ||||| | ||||||||    
T  23826067 ttaaaacgttaactcatcactaacctacctgattaacaactctttt 23826112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 10454305 - 10454229
Alignment:
Q  144 aacactaattcctcattaaactaccagattatccactctttttaagactaaaa-ctcaattcaaaaacctaaactag 219  Q
    ||||||| ||| ||||||| ||||||||||||| | ||| |||| | |||||| ||||||||||||||| |||||||    
T  10454305 aacactacttcttcattaacctaccagattatctattctctttagggctaaaaactcaattcaaaaaccgaaactag 10454229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 22237300 - 22237190
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaa 207  Q
    |||| ||||| ||||||| ||  || |||||||| ||||| ||||  |||| || ||||   ||||||||||||||||||||||| |||||||||||  |    
T  22237300 ccctaatcattaccctataatcaccctatcattataacaccaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-ga 22237202  T
Q  208 aacctaaactag 219  Q
    ||||||||||||    
T  22237201 aacctaaactag 22237190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 15727649 - 15727699
Alignment:
Q  159 ttaaactaccagattatccactctttttaagact-aaaactcaattcaaaa 208  Q
    |||| ||||| ||||||||||||||||||||| | ||||||||||||||||    
T  15727649 ttaacctaccggattatccactctttttaagaataaaaactcaattcaaaa 15727699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 3698429 - 3698574
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||| ||| ||||||||||||| | | |  |||||||| || |||||||| ||| | ||||| ||| ||||||| || |||||    
T  3698429 ttttctgcgattttctaccattggaacctccttggctccatctcttaaccctaaactctccaaaatcatccataatcattaccatatgattaccctatca 3698528  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||| |||  |||  | ||| ||| ||||| ||||| ||||||||||    
T  3698529 ttaaaacgttaacccatcactaacctacctgattaaccactctttt 3698574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 19807633 - 19807548
Alignment:
Q  120 accctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattc 204  Q
    ||||||||||  || | |||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| |||||||||||    
T  19807633 accctatgatcaccctgtcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc 19807548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 1683074 - 1683182
Alignment:
Q  108 tccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagactaaa-actcaattcaa 206  Q
    ||||| ||||||||||  ||||| |  |||||||  ||||||||||| || |||| |||||||||  || | |||||| ||| ||||| ||||||||| |    
T  1683074 tccctaatcatcaccccttgattacactatcattcaaacactaattcttctttaacctaccagatcgtctaatcttttaaaggctaaacactcaattcga 1683173  T
Q  207 aaacctaaa 215  Q
    |||||||||    
T  1683174 aaacctaaa 1683182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 24830236 - 24830079
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||| | |||||||| |||||||| ||||||||||||||||||||||||||| | ||||||||| || |||||||||||| | ||||||||| ||||    
T  24830236 gaaatcatagatttttctgcaattttctaccatgggagcctccttggctccgtttcttgaccctaaaatctccaaaatcgtccataatcatcaccatatg 24830137  T
Q  128 attcccatatcattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||| || ||||||||||||| |||| ||||| ||| ||||| ||||| ||||||||||    
T  24830136 attaccctatcattagaacattaatccctcactaacctacctgattaaccactctttt 24830079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 21557282 - 21557168
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||| |||||||| | |||||| ||||||||||||||||||||||||||| | ||||||||| || |||||||||||| | ||||||||| ||||    
T  21557282 gaaatcacagatttttctgcgattttctaccatgggagcctccttggctccgtttcttgaccctaaactctccaaaatcgtccataatcatcaccatatg 21557183  T
Q  128 attcccatatcatta 142  Q
    ||| || ||||||||    
T  21557182 attaccctatcatta 21557168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 21554637 - 21554480
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||| |||||||| | |||||| |||||||||||||||||||||| |||| | ||| ||||| || |||||||||||| | ||||||||| ||||    
T  21554637 gaaatcacagatttttctgcgattttctaccatgggagcctccttggctctgtttcttgactctaaactctccaaaatcgtccataatcatcaccatatg 21554538  T
Q  128 attcccatatcattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||| || |||||||| |||  |||| | ||| ||  ||||| ||||| ||||||||||    
T  21554537 attaccctatcattaaaacgttaatccatcactaccctacctgattaaccactctttt 21554480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 36460795 - 36460942
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| |||||||||||||||||| ||||||||||  |||||||| || |||||||| ||| | ||||||||| ||||||| || |||    
T  36460795 atttttctgcgattttctaccatgggagcctccttgactccgttttttaaccctaaactctccaaaatcatccataatcatcaccatatgattaccctat 36460894  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||  |||  |||| | ||| ||| ||||| ||||| ||||||||||    
T  36460895 cattgaaacgttaatccatcactaacctacccgattaaccactctttt 36460942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 14137715 - 14137906
Alignment:
Q  27 agaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctat 126  Q
    |||||||||| ||||||  || || |||||||||||||||||||| | ||||  ||||||||| |||| |||  ||| | || ||| ||  |||||| ||    
T  14137715 agaaatcacaaattttt--acgatgttccaccatgggagcctcctcgactccacttttcgaccttaaactcattaaacttgttcctaattgtcaccccat 14137812  T
Q  127 gattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagact-aaaactcaattcaaaaacctaaactag 219  Q
    ||||  ||||||||   |||| |||||| ||||||| |||||| |||||| |||||||||| | || |||||||| || |||||||||||||||    
T  14137813 gattatcatatcatccaaacagtaattcttcattaacctaccaaattatctactctttttacggctaaaaactcattttaaaaacctaaactag 14137906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 43242807 - 43242663
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||||||||| |  |||||||| || |||||||| ||| | ||||||||| ||||||| |  |||||    
T  43242807 ttttctgcgattttctaccatgggagcctccttggctccgtttcttaaccctaaactctccaaaatcatccataatcatcaccatatgattactctatca 43242708  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactcttt 184  Q
    ||| |||  |||  | ||| ||| ||||| ||||| |||||||||    
T  43242707 ttaaaacgttaacccatcactaacctacctgattaaccactcttt 43242663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 1856777 - 1856633
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||| ||||||||||||| | | || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  1856777 ttttctgcgattttctaccatgggaacctccttggctccatctctcaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatca 1856678  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactcttt 184  Q
    ||| |||  |||  | ||| ||| ||||| ||||| |||||||||    
T  1856677 ttaaaacgttaacccatcactaacctacctgattaaccactcttt 1856633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 22758117 - 22758013
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| ||||||||| ||||||||||||| | | |  ||||| || || |||||||| ||| | ||||||||||||||||| || |||    
T  22758117 atttttctgcgattttctaccatgggaacctccttggctccatctcttaaccctcaactctccaaaatcatccataatcatcaccctatgattaccctat 22758018  T
Q  138 catta 142  Q
    |||||    
T  22758017 catta 22758013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 23909087 - 23909135
Alignment:
Q  171 attatccactctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    |||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  23909087 attatccacttttttaaagactaaaactcaattcaaaaacttaaactag 23909135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 21674747 - 21674603
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||| ||||||||||||| | | |  |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  21674747 ttttctgcgattttctaccatgggaacctccttggctccatctctttaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatca 21674648  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactcttt 184  Q
    ||| |||  |||  | ||| ||| ||||| ||||| |||||||||    
T  21674647 ttaaaacgttaacccatcactaacctacctgattaaccactcttt 21674603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 13938840 - 13938917
Alignment:
Q  144 aacactaattcctcattaaactaccagattatccactctttttaagactaaaa--ctcaattcaaaaacctaaactag 219  Q
    ||||||||||| |  |||| ||||| ||||||||| ||||||||||  |||||  ||||||||||| |||||||||||    
T  13938840 aacactaattctttgttaacctaccggattatccattctttttaaggataaaaaactcaattcaaatacctaaactag 13938917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 19545424 - 19545286
Alignment:
Q  81 ttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccact 180  Q
    |||||||||||||| || |||||  || |||| ||| |||| | || ||  || |||||||  ||||||||||| || |||| |||||||||||||||||    
T  19545424 ttttcgaccctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcattcaaacactaattcttcgttaacctaccagattatccact 19545325  T
Q  181 ctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19545324 ctttttaagactaaaactcaattcaaaaacctaaactag 19545286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 1254582 - 1254729
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| ||||||||||| ||||||||||||||||| ||||||||| || |||||||| ||| | ||||||||| ||||||| || |||    
T  1254582 atttttctgcgattttctaccatgggagcatccttggctccgttttttgaccctaaactctccaaaatcatccataatcatcaccatatgattaccctat 1254681  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||  |||| |||| | ||| ||| ||||| ||||| ||||||||||    
T  1254682 cattgaaacattaatccatcactaacctacccgattaaccactctttt 1254729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 34140865 - 34140711
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcga-ccctaaattcaccaaaatcgtccctgatcatcaccctat 126  Q
    ||||||||| |||||| | | |||||| ||||||||||||||||||||||||||| | || ||||||| || |||||||||||| | || |||||| |||    
T  34140865 gaaatcacatatttttttgcgattttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaatcgtccataattatcaccatat 34140766  T
Q  127 gattcccatatcattagaacactaattcctcattaaactaccagattatccactc 181  Q
    |||| || ||||||||||||  |||| ||||| ||| |||||  |||| ||||||    
T  34140765 gattaccctatcattagaacgttaatccctcactaacctacctaattaaccactc 34140711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 34153481 - 34153327
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcga-ccctaaattcaccaaaatcgtccctgatcatcaccctat 126  Q
    ||||||||| |||||| | | |||||| ||||||||||||||||||||||||||| | || ||||||| || |||||||||||| | || |||||| |||    
T  34153481 gaaatcacatatttttttgcgattttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaatcgtccataattatcaccatat 34153382  T
Q  127 gattcccatatcattagaacactaattcctcattaaactaccagattatccactc 181  Q
    |||| || ||||||||||||  |||| ||||| ||| |||||  |||| ||||||    
T  34153381 gattaccctatcattagaacgttaatccctcactaacctacctaattaaccactc 34153327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 7430349 - 7430493
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||||||||| |  |||||||| || |||||||| ||| | ||||||||| ||||||| || |||||    
T  7430349 ttttctgcgattttctaccatgggagcctccttggctccgtttcttaaccctaaactctccaaaatcatccataatcatcaccatatgattaccctatca 7430448  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactcttt 184  Q
    ||| |||  |||  | ||| ||| ||||| ||||| |||||||||    
T  7430449 ttaaaacgttaacccatcactaacctacctgattaaccactcttt 7430493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 8759755 - 8759641
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||| |||||||| | |||||| ||||||||||||||||||||||||||| |  |||||||| || |||||||| |   | ||||||||| ||||    
T  8759755 gaaatcacatatttttctgcgattttctaccatgggagcctccttggctccgtttgttaaccctaaactctccaaaatcattgataatcatcaccatatg 8759656  T
Q  128 attcccatatcatta 142  Q
    ||| || ||||||||    
T  8759655 attaccctatcatta 8759641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 8767490 - 8767388
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||||||||| |  |||||||| || | |||||| ||| | ||||||||| ||||||| || |||||    
T  8767490 ttttctgcgattttctaccatgggagcctccttggctccgtttcttaaccctaaactctctaaaatcatccataatcatcaccatatgattaccctatca 8767391  T
Q  140 tta 142  Q
    |||    
T  8767390 tta 8767388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 1113 - 1169
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaa 94  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||    
T  1113 atttttctacgattttctaccatgggagtctccttggctccgttttttgaccctaaa 1169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 14593928 - 14593784
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||| ||||||||||||| ||| |  |||||||| || |||||||| ||| | ||||||||| ||||||| || |||||    
T  14593928 ttttctgcgattttctaccatgggaacctccttggctccatttcttaaccctaaactctccaaaatcatccataatcatcaccatatgattaccctatca 14593829  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactcttt 184  Q
    ||| |||  |||  | ||| ||| ||||| ||||| |||||||||    
T  14593828 ttaaaacgttaacccatcactaacctacctgattaaccactcttt 14593784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 20733494 - 20733384
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaa 207  Q
    |||| ||||| | ||||||||| || |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| |||||||||||  |    
T  20733494 ccctaatcattatcctatgattaccttatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-ga 20733396  T
Q  208 aacctaaactag 219  Q
    ||||||||||||    
T  20733395 aacctaaactag 20733384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 34296495 - 34296391
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccg-tttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccata 136  Q
    |||||||| | |||||| ||||||||||||||||||||| || ||||| |||| ||||||| |||||||| ||| | ||| | ||| ||||||| || ||    
T  34296495 atttttctgcgattttctaccatgggagcctccttggctgcgtttttttgaccttaaattctccaaaatcatccataatccttaccatatgattacccta 34296396  T
Q  137 tcatt 141  Q
    |||||    
T  34296395 tcatt 34296391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 7680836 - 7680768
Alignment:
Q  117 atcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    |||||| ||||||| || ||||||||||||| |||| ||||| ||| ||||| ||||| ||||||||||    
T  7680836 atcaccatatgattaccctatcattagaacattaatccctcactaacctacctgattaaccactctttt 7680768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 27852008 - 27852104
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattc 204  Q
    |||| ||||| ||||||||||  || |||||||| ||||||||||  |||| || ||||   |||||||||||||||||| |||| |||||||||||    
T  27852008 ccctaatcattaccctatgatcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaatactagaaactcaattc 27852104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 18555000 - 18554862
Alignment:
Q  81 ttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccact 180  Q
    |||||||||||||| || |||||  || |||| ||| |||| | || ||  || |||||||  ||||||||||| || |||| |||||||||||||||||    
T  18555000 ttttcgaccctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcattcaaacactaattcttcgttaacctaccagattatccact 18554901  T
Q  181 ctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18554900 ctttttaagactaaaactcaattcaaaaacctaaactag 18554862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 13267836 - 13267974
Alignment:
Q  81 ttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccact 180  Q
    |||||||||||||| |||||||| ||| |||| ||| |||| | |||| | || |||||||  || |||||||| || |||| ||||| |||||||||||    
T  13267836 ttttcgaccctaaactcaccaaactcgaccctaatcttcactccatgactaccctatcattcaaaaactaattcttcgttaacctacctgattatccact 13267935  T
Q  181 ctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
     |||||||||||||||||||||||||||| |||||||||    
T  13267936 ttttttaagactaaaactcaattcaaaaatctaaactag 13267974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 24046781 - 24046634
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| |||||||||||||||||||||| |||| | ||||||||| || |||||||| ||| | ||||||||| ||||||| || |||    
T  24046781 atttttctgcgattttctaccatgggagcctccttggctctgtttcttgaccctaaactctccaaaatcatccataatcatcaccatatgattaccctat 24046682  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||| |||  |||| | ||  ||| ||||| ||||| ||||||||||    
T  24046681 cattaaaacgttaatccatctctaacctacctgattaaccactctttt 24046634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 13235155 - 13235199
Alignment:
Q  173 tatccactctttttaagactaaaactcaattcaaaaacctaaact 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13235155 tatccactctttttaagactaaaactcaattcaaaaacctaaact 13235199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 13559574 - 13559511
Alignment:
Q  156 tcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  13559574 tcattaacctaccagattatccactcttttaaaggctaaaactcaattaaaaaacttaaactag 13559511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 184
Target Start/End: Complemental strand, 56115063 - 56114917
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| ||||||||||||||||||||||| ||| |  |||||||| || |||||||| ||| | ||||||||| ||||||| |  |||    
T  56115063 atttttctgcgattttctaccatgggagcctccttggctccatttcttaaccctaaactctccaaaatcatccataatcatcaccatatgattactctat 56114964  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactcttt 184  Q
    ||||| |||  |||| | ||| ||| ||| | ||||| |||||||||    
T  56114963 cattaaaacgttaatccatcactaacctaactgattaaccactcttt 56114917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 15888809 - 15888680
Alignment:
Q  81 ttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccact 180  Q
    |||||||||||||| || ||||| ||| |||| ||| |||| | |||| | || |||||||  ||||||||||| || |||| ||||| |||||||||||    
T  15888809 ttttcgaccctaaactcgccaaactcgaccctaatcttcactccatgactaccctatcattgaaacactaattcttcgttaacctacctgattatccact 15888710  T
Q  181 ctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
             ||||||||||||||||||||||||||||||    
T  15888709 ---------actaaaactcaattcaaaaacctaaactag 15888680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 20872466 - 20872382
Alignment:
Q  125 atgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaag--actaaaactcaattcaaa 207  Q
    |||||| || |||||||  ||||||||||| || |||| ||||||||||||||||||||||||||  |  |||||||||||||||    
T  20872466 atgattaccctatcattcaaacactaattcttcgttaacctaccagattatccactctttttaagtcaaaaaaactcaattcaaa 20872382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 12230687 - 12230774
Alignment:
Q  125 atgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaact 217  Q
    |||||| || |||||||  ||||||||||| || |||| ||||||||||||||||||||||     |||||| ||||||||||||| ||||||    
T  12230687 atgattaccctatcattcaaacactaattcttcgttaacctaccagattatccactctttt-----ctaaaattcaattcaaaaacataaact 12230774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 22201302 - 22201384
Alignment:
Q  135 tatcattagaacactaattcctcattaaactaccagattatccactctttttaagact--aaaactcaattcaaaaacctaaa 215  Q
    |||||||  ||||||||||| || |||| ||||||||||||| ||||||||||||  |  |||||| ||||||||||||||||    
T  22201302 tatcatttaaacactaattcttcgttaacctaccagattatcaactctttttaaggttaaaaaacttaattcaaaaacctaaa 22201384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 10057482 - 10057587
Alignment:
Q  114 atcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaaaacct 212  Q
    ||||| ||||||||||  || |||||||| ||| ||||||  |||| || ||||   ||||||||||||||||||||||| |||||||||||  ||||||    
T  10057482 atcattaccctatgatcaccctatcattataactctaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacct 10057580  T
Q  213 aaactag 219  Q
    |||||||    
T  10057581 aaactag 10057587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 18453572 - 18453717
Alignment:
Q  75 ctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagatta 174  Q
    ||||||||||||||| |||| || ||||| ||||| |  |||||| ||||| | || ||||||||||  ||||||||| |  |||||| | | |  ||||    
T  18453572 ctccgtttttcgaccttaaactcgccaaactcgtcacaaatcatcgccctaaggttaccatatcattccaacactaatcctccattaacccatcttatta 18453671  T
Q  175 tccactctttttaagacta-aaactcaattcaaaaacctaaactag 219  Q
    || || ||||||||| ||| | ||||||||||||| ||||||||||    
T  18453672 tctacactttttaagtctatagactcaattcaaaaccctaaactag 18453717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 15871233 - 15871105
Alignment:
Q  81 ttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccact 180  Q
    |||||||||||||| || ||||| ||| |||| ||| |||| | |||| | || |||||||  ||||||||||| |  |||| ||||| |||||||||||    
T  15871233 ttttcgaccctaaactcgccaaactcgaccctaatcttcactccatgactaccctatcattgaaacactaattcttg-ttaacctacctgattatccact 15871135  T
Q  181 ctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
             ||||||||||||||||||||||||||||||    
T  15871134 ---------actaaaactcaattcaaaaacctaaactag 15871105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 9886807 - 9886885
Alignment:
Q  144 aacactaattcctcattaaactaccagattatccactctttttaagactaaaa---ctcaattcaaaaacctaaactag 219  Q
    ||||||||||| |  ||||  |||| |||||||||||| ||||||| ||||||   |||||||||||||| ||||||||    
T  9886807 aacactaattctttgttaacttaccggattatccactcattttaaggctaaaaaaactcaattcaaaaacataaactag 9886885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 22161561 - 22161699
Alignment:
Q  81 ttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccact 180  Q
    |||||||||||||| || ||||| ||| |||| ||  | || | |||| | || |||||||  ||||||||||| ||||||| ||||| |||||||||||    
T  22161561 ttttcgaccctaaactcgccaaactcgaccctaatagttactccatgactaccctatcattcaaacactaattcttcattaacctacctgattatccact 22161660  T
Q  181 ctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22161661 ctttttaagactaaaactcaattcaaaaacctaaactag 22161699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 13520097 - 13520254
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||| |||||||| | |||||| |||||||||||||||||||||| |||| | ||||||||| || |||||||||||| | ||||||||| ||||    
T  13520097 gaaatcacagatttttctgcgattttctaccatgggagcctccttggctctgtttcttgaccctaaactctccaaaatcgtccataatcatcaccatatg 13520196  T
Q  128 attcccatatcattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||| || ||||||||||||  |||| | ||| ||| |||||  |||| ||||||||||    
T  13520197 attaccctatcattagaacgttaatccatcactaacctacctaattaaccactctttt 13520254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 50755639 - 50755483
Alignment:
Q  29 aaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatga 128  Q
    |||||| | |||||||| | |||||| ||||||||||||||||||||||| ||| | ||||||||| || |||||||||||  | ||||||||| |||||    
T  50755639 aaatcatagatttttctgcgattttctaccatgggagcctccttggctccatttcttgaccctaaactctccaaaatcgtcaataatcatcaccatatga 50755540  T
Q  129 ttcccatatcattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    || || ||||||||||||| |||| | ||| ||| ||||| ||||| ||||||||||    
T  50755539 ttaccctatcattagaacattaatccatcactaacctacctgattaaccactctttt 50755483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 21999429 - 21999504
Alignment:
Q  144 aacactaattcctcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21999429 aacactaattcttcattaacctacctgattatccactctttttaagactaaaactcaattcaaaaacctaaactag 21999504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 14479818 - 14479676
Alignment:
Q  32 tcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattc 131  Q
    ||||| |||||||| | |||||| ||||||||||||||||||||||||||| |  |||||||| || |||||||||||| | ||||||||| |||||||     
T  14479818 tcacagatttttctgcgattttctaccatgggagcctccttggctccgtttcttaaccctaaactctccaaaatcgtccataatcatcaccatatgatta 14479719  T
Q  132 ccatatcattagaacactaattcctcattaaactaccagatta 174  Q
    || |||||||| |||| |||| ||||| ||| ||||| |||||    
T  14479718 ccctatcattaaaacattaatccctcactaacctacctgatta 14479676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 31224190 - 31224034
Alignment:
Q  29 aaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatga 128  Q
    |||||||| |||||||| | |||||| |||||||||||||| |||||||||||| | ||||||||| || |||||||||||| | ||||||||| |||||    
T  31224190 aaatcacatatttttctgcgattttctaccatgggagcctcattggctccgtttcttgaccctaaactctccaaaatcgtccataatcatcaccatatga 31224091  T
Q  129 ttcccatatcattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    || || |||||||| |||  |||| | ||| ||  ||||| ||||| ||||||||||    
T  31224090 ttaccctatcattaaaacgttaatccatcactaccctacctgattaaccactctttt 31224034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 21976998 - 21977073
Alignment:
Q  144 aacactaattcctcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    ||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21976998 aacactaattcttcattaacctacctgattatccactcttttaaagactaaaactcaattcaaaaacctaaactag 21977073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 11913546 - 11913693
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||| || | |||||| ||| | ||||||||| ||||||| || |||    
T  11913546 atttttctgcgattttctaccatgggagcctccttggctccgttttttgaccctaaactctctaaaatcatccataatcatcaccatatgattaccctat 11913645  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||  |||  |||| | ||| ||| ||||| ||||| ||||||||||    
T  11913646 cattgaaacgttaatccatcactaacctacccgattaaccactctttt 11913693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 10302604 - 10302694
Alignment:
Q  125 atgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaa 215  Q
    |||||| || |||||||  ||||||||||| || |||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  10302604 atgattaccctatcattcaaacactaattcttcgttaacctaccagattatccactcttttaaagactaaaactcaattcaaaaacttaaa 10302694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 19450967 - 19451081
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||| ||| |||||||||| |||||| ||||||||||||||||||||||| ||| | ||||||||| || |||||||| ||| | ||||||||| ||||    
T  19450967 gaaattacagatttttctacgattttctaccatgggagcctccttggctccatttcttgaccctaaactctccaaaatcatccataatcatcaccatatg 19451066  T
Q  128 attcccatatcatta 142  Q
    ||| || ||||||||    
T  19451067 attaccctatcatta 19451081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 10340940 - 10341024
Alignment:
Q  135 tatcattagaacactaattcctcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    |||||||  ||||||||||| || |||| ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  10340940 tatcattcaaacactaattcttcgttaacctaccggattatccactcttttaaagactaaaactcaattcaaaaacttaaactag 10341024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 51602827 - 51602679
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccct-aaattcaccaaaatcgtccctgatcatcaccctatgattcccata 136  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| |||||| ||| || |||||||| ||| | ||| || || ||||||| || ||    
T  51602827 atttttctacgattttctaccatgggagcctccttggctccgttttttgaccctaaaactctccaaaatcatccataatcctcgccatatgattacccta 51602728  T
Q  137 tcattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    |||||  |||  |||| ||||| ||| ||||| ||||| ||||||||||    
T  51602727 tcattgaaacgttaatccctcactaacctacccgattaaccactctttt 51602679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 19444401 - 19444515
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||| ||| |||||||||| |||||| ||||||||||||||||||||||| ||| | ||||||||| || |||||||| ||| | ||||||||| || |    
T  19444401 gaaattacagatttttctacgattttctaccatgggagcctccttggctccatttcttgaccctaaactctccaaaatcatccataatcatcaccatagg 19444500  T
Q  128 attcccatatcatta 142  Q
    ||| || ||||||||    
T  19444501 attaccctatcatta 19444515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 19186613 - 19186747
Alignment:
Q  81 ttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccact 180  Q
    |||||||||||||| || ||||| ||| || | ||| |||| | |||| | || |||||||  ||||||||||| |  |||| ||||| ||||| |||||    
T  19186613 ttttcgaccctaaactcgccaaactcgaccgtaatcttcactccatgactaccctatcattcaaacactaattctttgttaacctacctgattacccact 19186712  T
Q  181 ctttttaagactaaaactcaattcaaaaacctaaa 215  Q
    ||||| |||||||||||||||||||||||| ||||    
T  19186713 cttttcaagactaaaactcaattcaaaaacttaaa 19186747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 14647329 - 14647184
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||||| | | |  |||||||| || |||||||| ||| | ||||||||| ||||||| || |||||    
T  14647329 ttttctgcgattttctaccatgggagcctccttggctccatctcttaaccctaaactctccaaaatcatccataatcatcaccatatgattaccctatca 14647230  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||| |||  |||| | ||| ||| ||||| ||||| ||||||||||    
T  14647229 ttaaaacgttaatccatcactaacctacctgattaaccactctttt 14647184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 27868488 - 27868423
Alignment:
Q  150 aattcctcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaa 215  Q
    ||||| || |||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  27868488 aattcttcgttaacctaccagattatccactctttttaaaactaaaactcaattcgaaaacctaaa 27868423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 10989099 - 10988963
Alignment:
Q  49 attttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacac 148  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||| || |||||||| ||| | ||||||||| ||||||| || |||||||| |||      
T  10989099 attttctaccatgggagcctccttggctccgttacttaaccctaaactctccaaaatcatccataatcatcaccatatgattaccctatcattaaaacgt 10989000  T
Q  149 taattcctcattaaactaccagattatccactctttt 185  Q
    |||  | ||| ||| ||||| ||||| ||||||||||    
T  10988999 taacccatcactaacctacctgattaaccactctttt 10988963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 12270778 - 12270633
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| |||||||| ||||||||  ||||||||||||| | | |  |||||||| || |||||||| ||| | ||||||||| ||||||| || |||||    
T  12270778 ttttctgcaattttctaccatggggacctccttggctccatctcttaaccctaaactctccaaaatcatccataatcatcaccatatgattaccctatca 12270679  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||| |||  |||  | ||| ||| ||||| ||||| ||||||||||    
T  12270678 ttaaaacgttaacccatcactaacctacctgattaaccactctttt 12270633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 14085358 - 14085460
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  14085358 ttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 14085457  T
Q  140 tta 142  Q
    |||    
T  14085458 tta 14085460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 14090759 - 14090861
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  14090759 ttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 14090858  T
Q  140 tta 142  Q
    |||    
T  14090859 tta 14090861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 16358106 - 16357977
Alignment:
Q  81 ttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccact 180  Q
    |||||||||||||| || ||||| ||| |||| ||| |||| | |||| | || |||||||  ||||||||||| ||  ||| ||||| |||||||||||    
T  16358106 ttttcgaccctaaactcgccaaattcgaccctaatcttcactccatgactaccctatcattgaaacactaattcttcgctaacctacctgattatccact 16358007  T
Q  181 ctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
             ||||||||||||||||||||||||||||||    
T  16358006 ---------actaaaactcaattcaaaaacctaaactag 16357977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 30123675 - 30123586
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgat 129  Q
    |||||| | |||||| |||||||||||||| |||||||| ||| |  |||||||| || |||||||| ||| | ||||||||| ||||||    
T  30123675 ttttctgcgattttctaccatgggagcctcattggctccatttcttaaccctaaactctccaaaatcatccataatcatcaccatatgat 30123586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 52989082 - 52988998
Alignment:
Q  135 tatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 219  Q
    |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  52989082 tatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 52988998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 24122553 - 24122409
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||| ||||||||||||| | | |  |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  24122553 ttttctgcgattttctaccatgggaacctccttggctccatctcttaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatca 24122454  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactcttt 184  Q
    ||| |||  |||  | ||| ||| ||||| ||||| |||||||||    
T  24122453 ttaaaacgttaacccatcactaacctacctgattaaccactcttt 24122409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 8582644 - 8582542
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||| ||||||||||||| | | |  |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  8582644 ttttctgcgattttctaccatgggaacctccttggctccatctcttaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatca 8582545  T
Q  140 tta 142  Q
    |||    
T  8582544 tta 8582542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 49400358 - 49400460
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||| ||||||||||||| | | |  |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  49400358 ttttctgcgattttctaccatgggaacctccttggctccatctcttaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatca 49400457  T
Q  140 tta 142  Q
    |||    
T  49400458 tta 49400460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 49440 - 49597
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||| |||||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||||||| | ||||||||| ||||    
T  49440 gaaatcacaaatttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcgtccataatcatcaccatatg 49539  T
Q  128 attcccatatcattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||| || ||||||||||||  |||| ||||| ||| ||||| ||||| ||||||||||    
T  49540 attaccctatcattagaacgttaatccctcactaacctacctgattaaccactctttt 49597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 16025 - 16100
Alignment:
Q  144 aacactaattcctcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16025 aacactaattcttcattaaactacctgattatccactctttttaagactaaaactcaattcaaaaacttaaactag 16100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 13745014 - 13744857
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||  |||||||| | |||||| ||||||||||||||||||||||||||| | ||||||||| || |||||||||||| | || || ||| ||||    
T  13745014 gaaatcacttatttttctgcgattttctaccatgggagcctccttggctccgtttcttgaccctaaactctccaaaatcgtccataattataaccatatg 13744915  T
Q  128 attcccatatcattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||| || ||||||||||||  |||| | ||| ||| ||||| ||||| ||||||||||    
T  13744914 attaccctatcattagaacgttaatccatcactaacctacctgattaaccactctttt 13744857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 36685487 - 36685330
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||| |||||||||| |||||| ||||| ||||||||||||||||||||| | ||||||||| || |||||||||||| | ||||||||| ||||    
T  36685487 gaaatcacatatttttctacgattttctaccataggagcctccttggctccgtttcttgaccctaaactctccaaaatcgtccataatcatcaccatatg 36685388  T
Q  128 attcccatatcattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||| ||  ||||||| |||  |||| | ||| ||  ||||| ||||| ||||||||||    
T  36685387 attaccccatcattaaaacgttaatccatcactaccctacctgattaaccactctttt 36685330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 15214303 - 15214450
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||| ||| | ||| ||||| ||||||| || |||    
T  15214303 atttttctgcgattttctaccatgggagcctccttggctccgttttttgaccctaaactctccaaaatcatccataatcgtcaccatatgattaccctat 15214402  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||  |||  |||| | ||| ||| ||||| ||||| ||||||||||    
T  15214403 cattgaaacgttaatccatcactaacctacccgattaaccactctttt 15214450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 11800259 - 11800121
Alignment:
Q  81 ttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccact 180  Q
    |||||||||||||| || ||||| ||  |||| ||| |||| | |||||| || |||||||  ||||||||||| || |||| ||||||||||||||| |    
T  11800259 ttttcgaccctaaactcgccaaactcaaccctaatcttcactccatgattaccctatcattgaaacactaattcttctttaacctaccagattatccatt 11800160  T
Q  181 ctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    ||||||||||||||||||| ||| ||||| || ||||||    
T  11800159 ctttttaagactaaaactctattaaaaaagcttaactag 11800121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 30820494 - 30820380
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||| |||||||| | |||||| ||||||||||||| ||||||||||||| | |||| |||| || |||||||||||| | ||||||||| ||||    
T  30820494 gaaatcacagatttttctgcgattttctaccatgggagccttcttggctccgtttcttgaccttaaactctccaaaatcgtccataatcatcaccgtatg 30820395  T
Q  128 attcccatatcatta 142  Q
    ||| || ||||||||    
T  30820394 attaccctatcatta 30820380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 38828887 - 38829032
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||||| | | |  |||||||| || |||||||| ||| | ||||||||| ||||||| || |||||    
T  38828887 ttttctgcgattttctaccatgggagcctccttggctccatctcttaaccctaaactctccaaaatcatccataatcatcaccatatgattaccctatca 38828986  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||| |||  |||| | ||| ||| ||||| ||||| ||||||||||    
T  38828987 ttaaaacgttaatccatcactaacctacctgattaaccactctttt 38829032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 32772165 - 32772301
Alignment:
Q  49 attttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacac 148  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||| | | | ||||||| | | ||||| || |||||||| |||      
T  32772165 attttctaccatgggagcctccttggctccgttttttgaccctaaactctccaaaatcattcataatcatcatcatctgattaccctatcattaaaacgt 32772264  T
Q  149 taattcctcattaaactaccagattatccactctttt 185  Q
    |||| | ||| ||| ||| | ||||| ||||||||||    
T  32772265 taatccatcactaacctatccgattaaccactctttt 32772301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 9693197 - 9693134
Alignment:
Q  156 tcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  9693197 tcattaacctaccagattatccactcttttaaaggctaaaactcaattaaaaaacttaaactag 9693134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 11091449 - 11091545
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattc 204  Q
    |||| ||||| ||||||||||| || |||||||| ||||||||||  |||| || |||    ||||||||||||||||||||||| |||||||||||    
T  11091449 ccctaatcattaccctatgattaccctatcattataacactaattattcatcaacctaatgtattatccactctttttaagactagaaactcaattc 11091545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 16379221 - 16379171
Alignment:
Q  170 gattatccactctttttaagactaaaa-ctcaattcaaaaacctaaactag 219  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||||||    
T  16379221 gattagccactctttttaaaactaaaaactcaattcaaaaacctaaactag 16379171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 19617122 - 19617224
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  19617122 ttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 19617221  T
Q  140 tta 142  Q
    |||    
T  19617222 tta 19617224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 27565664 - 27565800
Alignment:
Q  49 attttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacac 148  Q
    |||||| ||||||||| ||||||||||||| | | |  |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||||| |||      
T  27565664 attttctaccatgggaacctccttggctccatctcttaaccctaaactctccaaaatcatccataaacatcaccatatgattaccctatcattaaaacgt 27565763  T
Q  149 taattcctcattaaactaccagattatccactctttt 185  Q
    |||  | ||| ||| ||||| ||||| ||||||||||    
T  27565764 taaaccatcactaacctacctgattaaccactctttt 27565800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 12068 - 11993
Alignment:
Q  144 aacactaattcctcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    ||||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12068 aacactaattcttcgttaacctaccagattatccactctttttaaaactaaaactcaattcaaaaacctaaactag 11993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 4505 - 4340
Alignment:
Q  9 gacatcatcagaccatgaagaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgt 108  Q
    |||| |||||||| ||| |||||||||| |||||||| | ||||||||| ||| |||  |||||||||  ||||||| |||||||| |||||||||||||    
T  4505 gacagcatcagac-atgcagaaatcacagatttttctgcgattttccactatgcgaggttccttggctatgtttttcaaccctaaactcaccaaaatcgt 4407  T
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattat 175  Q
    |||| ||||||||| |||||||  | |||||||| |||  |||||| ||||||| | ||| ||||||    
T  4406 ccctaatcatcaccgtatgattaacctatcattataaccgtaattcttcattaaccaaccggattat 4340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 10526 - 10672
Alignment:
Q  39 tttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatc 138  Q
    ||||||| | |||||| |||||||||| |||||||||||||||| | ||||||||| || ||||||| |||| | ||||||||| ||||||| || ||||    
T  10526 tttttctgcgattttctaccatgggagtctccttggctccgtttcttgaccctaaactctccaaaattgtccataatcatcaccatatgattaccctatc 10625  T
Q  139 attagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||||||  |||| | ||| ||| ||||| ||||| ||||||||||    
T  10626 attagaacgttaatccatcactaacctacctgattaaccactctttt 10672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 51 - 185
Target Start/End: Original strand, 14688 - 14822
Alignment:
Q  51 tttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacacta 150  Q
    |||| |||||||||||||||||||||| |||| | ||||||||| || |||||||||||| | ||||||||| ||||||| || ||||||||||||  ||    
T  14688 tttctaccatgggagcctccttggctctgtttcttgaccctaaactctccaaaatcgtccataatcatcaccatatgattaccctatcattagaacgtta 14787  T
Q  151 attcctcattaaactaccagattatccactctttt 185  Q
    || | ||| ||| ||||| ||||| ||||||||||    
T  14788 atccatcactaacctacctgattaaccactctttt 14822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 51 - 185
Target Start/End: Original strand, 16708 - 16842
Alignment:
Q  51 tttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacacta 150  Q
    |||| |||||||||||||||||||||| |||| | ||||||||| || |||||||||||| | ||||||||| ||||||| || ||||||||||||  ||    
T  16708 tttctaccatgggagcctccttggctctgtttcttgaccctaaactctccaaaatcgtccataatcatcaccatatgattaccctatcattagaacgtta 16807  T
Q  151 attcctcattaaactaccagattatccactctttt 185  Q
    || | ||| ||| ||||| ||||| ||||||||||    
T  16808 atccatcactaacctacctgattaaccactctttt 16842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 8033 - 8151
Alignment:
Q  28 gaaatcacacat-ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctat 126  Q
    ||||||||| || |||||| | |||||| |||||||||||||||||||||| |||| | ||||||||| || |||||||||||| | ||||||||| |||    
T  8033 gaaatcacagatattttctgcgattttctaccatgggagcctccttggctctgtttcttgaccctaaactctccaaaatcgtccataatcatcaccatat 8132  T
Q  127 gattcccatatcattagaa 145  Q
    |||| || |||||||||||    
T  8133 gattaccctatcattagaa 8151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 18728 - 18822
Alignment:
Q  51 tttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaa 145  Q
    |||| |||||||||||||||||||||| |||| | ||||||||| || |||||||||||| | ||||||||| ||||||| || |||||||||||    
T  18728 tttctaccatgggagcctccttggctctgtttcttgaccctaaactctccaaaatcgtccataatcatcaccatatgattaccctatcattagaa 18822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 26762 - 26898
Alignment:
Q  49 attttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacac 148  Q
    |||||| |||||| ||||||||||||||| |||| | ||||||||| || |||||||| ||| | ||||||| | | ||||| || |||||||| |||      
T  26762 attttctaccatgagagcctccttggctctgtttcttgaccctaaactctccaaaatcatccataatcatcatcatctgattaccctatcattaaaacgt 26861  T
Q  149 taattcctcattaaactaccagattatccactctttt 185  Q
    |||| | ||| ||| ||||| ||||| ||||||||||    
T  26862 taatccatcactaacctacccgattaaccactctttt 26898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 28144 - 28280
Alignment:
Q  49 attttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacac 148  Q
    |||||| |||||| ||||||||||||||| |||| | ||||||||| || |||||||| ||| | ||||||| | | ||||| || |||||||| |||      
T  28144 attttctaccatgagagcctccttggctctgtttcttgaccctaaactctccaaaatcatccataatcatcatcatctgattaccctatcattaaaacgt 28243  T
Q  149 taattcctcattaaactaccagattatccactctttt 185  Q
    |||| | ||| ||| ||||| ||||| ||||||||||    
T  28244 taatccatcactaacctacccgattaaccactctttt 28280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 8770 - 8883
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||| |||||||| | |||||| || |||||||||||||||||||||||| | ||||||||| || |||||||||||| | ||||||||| ||||    
T  8770 gaaatcacagatttttctgcgattttctacgatgggagcctccttggctccgtttcttgaccctaaactctccaaaatcgtccataatcatcaccatatg 8869  T
Q  128 attcccatatcatt 141  Q
    ||| || |||||||    
T  8870 attaccctatcatt 8883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 7708 - 7855
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| ||||||||||||||||||||||||||| | ||||||||| || |||||||  ||| | ||||||||| ||||||| || |||    
T  7708 atttttctgcgattttctaccatgggagcctccttggctccgtttcttgaccctaaactctccaaaataatccataatcatcaccatatgattaccctat 7807  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||| |||  |||| | ||| ||| ||||| ||||| ||||||||||    
T  7808 cattaaaacgttaatccatcactaacctacctgattaaccactctttt 7855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 822 - 969
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||| || | |||||| ||| | ||||||||| ||||||| || |||    
T  822 atttttctgcgattttctaccatgggagcctccttggctccgttttttgaccctaaactctctaaaatcatccataatcatcaccatatgattaccctat 921  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||  |||  |||| | ||| ||| ||||| ||||| ||||||||||    
T  922 cattgaaacgttaatccatcactaacctacccgattaaccactctttt 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 11785 - 11924
Alignment:
Q  81 ttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccact 180  Q
    |||||||||||||| |||||||| ||| |||| ||| |||| | |||| | || |||||||  ||||||||||| || | || ||||  |||||||||||    
T  11785 ttttcgaccctaaactcaccaaactcgaccctaatcttcactccatgactaccctatcattcaaacactaattcttcgtgaacctacttgattatccact 11884  T
Q  181 ctttttaagact-aaaactcaattcaaaaacctaaactag 219  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  11885 ctttttaagactaaaaactcaattcaaaaatctaaactag 11924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 2716 - 2641
Alignment:
Q  144 aacactaattcctcattaaactaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 219  Q
    ||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2716 aacactaattcttcgttaacctgccagattatccactctttttaagactaaaactcaattcaaaaacttaaactag 2641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 17505 - 17358
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| ||||||||||||||||||||||||||| | ||||||||| || |||||||| | | | ||||||||| ||||||| || |||    
T  17505 atttttctgcgattttctaccatgggagcctccttggctccgtttcttgaccctaaactctccaaaatcattcataatcatcaccatatgattaccctat 17406  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||| |||  |||| | ||  ||| ||||| ||||| ||||||||||    
T  17405 cattaaaactttaatccatctctaacctacctgattaaccactctttt 17358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 22406 - 22302
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||  |||||||||||||||||||||| |||| | ||||||||| || |||||||| ||| | ||||||||| ||||||| || |||    
T  22406 atttttctgcgattttataccatgggagcctccttggctctgtttcttgaccctaaactctccaaaatcatccataatcatcaccatatgattaccctat 22307  T
Q  138 catta 142  Q
    |||||    
T  22306 catta 22302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 123787 - 123643
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||||||||| |  |||||||| || |||||||| ||| | ||||||||| ||||||| || |||||    
T  123787 ttttctgcgattttctaccatgggagcctccttggctccgtttcttaaccctaaactctccaaaatcatccataatcatcaccatatgattaccctatca 123688  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactcttt 184  Q
    ||| |||  |||  | ||| ||| ||||| ||||| |||||||||    
T  123687 ttaaaacgttaacccatcactaacctacctgattaaccactcttt 123643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 45496750 - 45496852
Alignment:
Q  28 gaaatcacacatttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatg 127  Q
    ||||||||| |||||||| | |||||| || |||| ||||||||||||||||||| | ||| ||||| || |||||||||||| | ||||||||| ||||    
T  45496750 gaaatcacagatttttctgcgattttctactatggaagcctccttggctccgtttcttgactctaaactctccaaaatcgtccataatcatcaccatatg 45496849  T
Q  128 att 130  Q
    |||    
T  45496850 att 45496852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 2332358 - 2332213
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||||| | | |  |||||||| || |||||||| ||| | ||||||||| | ||||| || |||||    
T  2332358 ttttctgcgattttctaccatgggagcctccttggctccatctcttaaccctaaactctccaaaatcatccataatcatcaccatgtgattaccctatca 2332259  T
Q  140 ttagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    |||||||  |||  | ||| ||| ||||| ||||| ||||||||||    
T  2332258 ttagaacgttaacccatcactaatctacctgattaaccactctttt 2332213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 42095240 - 42095138
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| |||||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  42095240 ttttctgcaattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 42095141  T
Q  140 tta 142  Q
    |||    
T  42095140 tta 42095138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 31343986 - 31344127
Alignment:
Q  79 gtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatcca 178  Q
    |||||||||||||||| || ||||| ||| |||  |||||||||||| | || || |||||||  |||||||||||  |||||| ||| | ||||||| |    
T  31343986 gtttttcgaccctaaactcgccaaactcgccccaaatcatcaccctaaggttaccctatcattccaacactaattctccattaacctatccgattatcta 31344085  T
Q  179 ctctttttaagacta-aaactcaattcaaaaacctaaactag 219  Q
     | |||||||| ||| | ||| ||||||||| ||||||||||    
T  31344086 atatttttaaggctatagactaaattcaaaaccctaaactag 31344127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 15544149 - 15544227
Alignment:
Q  118 tcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagactaaaa 196  Q
    |||||| |||||| || ||||| |  ||||||||||| |  |||| |||||||||||||||||||||||||| ||||||    
T  15544149 tcaccccatgattaccctatcaatcaaacactaattctttgttaacctaccagattatccactctttttaaggctaaaa 15544227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 21542883 - 21542985
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  21542883 ttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 21542982  T
Q  140 tta 142  Q
    |||    
T  21542983 tta 21542985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 17451265 - 17451362
Alignment:
Q  125 atgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagact---aaaactcaattcaaaaacctaaactag 219  Q
    |||||| || |||||||  |||||||| || |  |||| ||||||||||||||||| |||||||| ||   ||||||||| | |||||||||||||||    
T  17451265 atgattaccctatcattcaaacactaactcttagttaacctaccagattatccactatttttaaggctaaaaaaactcaacttaaaaacctaaactag 17451362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 21995914 - 21995804
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaa 207  Q
    |||| ||||| ||||||||||   | |||||||| ||||||||||  |||| || ||||   || |||||||||||||||||||| |||||||||||  |    
T  21995914 ccctaatcattaccctatgatcaacctatcattataacactaattattcatcaacctactgtatgatccactctttttaagactagaaactcaattc-ga 21995816  T
Q  208 aacctaaactag 219  Q
    ||||||||||||    
T  21995815 aacctaaactag 21995804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 21496450 - 21496487
Alignment:
Q  159 ttaaactaccagattatccactctttttaagactaaaa 196  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  21496450 ttaacctaccggattatccactctttttaagactaaaa 21496487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0546 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0546
Description:

Target: scaffold0546; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 10144 - 9997
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| ||||||||||||||||||||||  ||| |  |||||||| || |||||||| ||| | ||||||||| ||||||| || |||    
T  10144 atttttctgcgattttctaccatgggagcctccttggctcgatttcttaaccctaaactctccaaaatcatccataatcatcaccatatgattaccctat 10045  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||| |||  |||| | ||| ||| ||||| ||| | ||||||||||    
T  10044 cattaaaacgttaatccatcactaacctacctgatcaaccactctttt 9997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 3163 - 3310
Alignment:
Q  38 atttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatat 137  Q
    |||||||| | |||||| ||||||||||||||||||||||  ||| |  |||||||| || |||||||| ||| | ||||||||| ||||||| || |||    
T  3163 atttttctgcgattttctaccatgggagcctccttggctcgatttcttaaccctaaactctccaaaatcatccataatcatcaccatatgattaccctat 3262  T
Q  138 cattagaacactaattcctcattaaactaccagattatccactctttt 185  Q
    ||||| |||  |||| | ||| ||| ||||| ||| | ||||||||||    
T  3263 cattaaaacgttaatccatcactaacctacctgatcaaccactctttt 3310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 1241 - 1351
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaa 207  Q
    |||| ||||| ||||||||||  || |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| |||||||||||  |    
T  1241 ccctaatcattaccctatgataaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-ga 1339  T
Q  208 aacctaaactag 219  Q
    ||||||||||||    
T  1340 aacctaaactag 1351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 11717 - 11801
Alignment:
Q  135 tatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 219  Q
    |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  11717 tatcattataacactaatttttcatcaacctactgtattatccactctttttaagactagaaactcaattc-aaaacctaaactag 11801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 5102 - 5199
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattca 205  Q
    |||| ||||| ||||||||||  || |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| ||||||||||||    
T  5102 ccctaatcattaccctatgatcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattca 5199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 12122 - 12219
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattca 205  Q
    |||| ||||| ||||||||||  || |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| ||||||||||||    
T  12122 ccctaatcattaccctatgatcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattca 12219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 1740 - 1850
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaa 207  Q
    |||| ||||| ||||||||||   | |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| |||||||||||  |    
T  1740 ccctaatcattaccctatgatcaacctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-ga 1838  T
Q  208 aacctaaactag 219  Q
    ||||||||||||    
T  1839 aacctaaactag 1850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 68110 - 68208
Alignment:
Q  120 accctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaaaacctaaacta 218  Q
    ||||||||||  || |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  68110 accctatgatcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaacta 68208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 39228 - 39330
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  39228 ttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 39327  T
Q  140 tta 142  Q
    |||    
T  39328 tta 39330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 29495 - 29393
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  29495 ttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 29396  T
Q  140 tta 142  Q
    |||    
T  29395 tta 29393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 34896 - 34794
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  34896 ttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 34797  T
Q  140 tta 142  Q
    |||    
T  34796 tta 34794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 46329 - 46227
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||| |||||||||||||  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  46329 ttttctgcgattttctaccatgggaacctccttggctccaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 46230  T
Q  140 tta 142  Q
    |||    
T  46229 tta 46227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 51733 - 51631
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||| |||||||||||||  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  51733 ttttctgcgattttctaccatgggaacctccttggctccaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 51634  T
Q  140 tta 142  Q
    |||    
T  51633 tta 51631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 173911 - 173809
Alignment:
Q  40 ttttctacaattttccaccatgggagcctccttggctccgtttttcgaccctaaattcaccaaaatcgtccctgatcatcaccctatgattcccatatca 139  Q
    |||||| | |||||| ||||||||||||||||||||| |  || || |||||||| || |||||||| ||| | | ||||||| ||||||| || |||||    
T  173911 ttttctgcgattttctaccatgggagcctccttggcttcaattctcaaccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 173812  T
Q  140 tta 142  Q
    |||    
T  173811 tta 173809  T

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Target: scaffold0174 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 13439 - 13547
Alignment:
Q  109 ccctgatcatcaccctatgattcccatatcattagaacactaattcctcattaaactaccagattatccactctttttaagacta-aaactcaattcaaa 207  Q
    |||| ||||| ||||||||||  || |||||||| ||||||||||  |||| || ||||   ||||||||||||||||||||||| ||| |||||||  |    
T  13439 ccctaatcattaccctatgatcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaattcaattc-ga 13537  T
Q  208 aacctaaact 217  Q
    ||||||||||    
T  13538 aacctaaact 13547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 11737 - 11659
Alignment:
Q  144 aacactaattcctcattaaactaccagattatccactctttttaagactaaaa---ctcaattcaaaaacctaaactag 219  Q
    ||||||||||| |  ||||  |||| |||||||||||| ||||||| ||||||   |||||||||||||| ||||||||    
T  11737 aacactaattctttgttaacttaccggattatccactcattttaaggctaaaaaaactcaattcaaaaacataaactag 11659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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