View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17229_high_1 (Length: 602)

Name: NF17229_high_1
Description: NF17229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17229_high_1
NF17229_high_1
[»] chr5 (24 HSPs)
chr5 (18-587)||(17143014-17143562)
chr5 (204-316)||(24270006-24270118)
chr5 (204-316)||(24346637-24346749)
chr5 (204-316)||(41666893-41667005)
chr5 (204-316)||(95402-95513)
chr5 (204-314)||(25258204-25258313)
chr5 (204-314)||(25321994-25322103)
chr5 (194-316)||(6919330-6919452)
chr5 (255-316)||(9368717-9368778)
chr5 (204-309)||(15480394-15480498)
chr5 (207-316)||(20510778-20510885)
chr5 (258-316)||(17016011-17016069)
chr5 (208-314)||(17352572-17352676)
chr5 (254-316)||(33337374-33337436)
chr5 (255-316)||(8081250-8081311)
chr5 (194-298)||(17150387-17150491)
chr5 (255-316)||(43117769-43117830)
chr5 (204-316)||(24531671-24531782)
chr5 (204-288)||(35167558-35167642)
chr5 (233-303)||(11896305-11896375)
chr5 (259-316)||(11896051-11896108)
chr5 (255-316)||(15590060-15590121)
chr5 (255-316)||(18333600-18333661)
chr5 (279-315)||(30770186-30770222)
[»] chr1 (16 HSPs)
chr1 (194-316)||(39348253-39348375)
chr1 (208-316)||(4112676-4112783)
chr1 (204-316)||(38733223-38733330)
chr1 (204-316)||(4112907-4113018)
chr1 (233-316)||(25713258-25713341)
chr1 (204-316)||(35772101-35772212)
chr1 (255-316)||(7307843-7307904)
chr1 (204-316)||(33156805-33156917)
chr1 (255-313)||(26173360-26173418)
chr1 (206-316)||(26176982-26177091)
chr1 (204-313)||(35892128-35892236)
chr1 (279-316)||(2859528-2859565)
chr1 (207-316)||(25145621-25145729)
chr1 (255-316)||(52961469-52961530)
chr1 (280-316)||(369779-369815)
chr1 (204-316)||(27413419-27413530)
[»] scaffold0692 (1 HSPs)
scaffold0692 (204-316)||(5655-5766)
[»] chr7 (17 HSPs)
chr7 (204-316)||(25620208-25620319)
chr7 (204-317)||(4886401-4886513)
chr7 (204-316)||(36277127-36277238)
chr7 (208-316)||(1596669-1596776)
chr7 (208-316)||(30727255-30727363)
chr7 (194-316)||(22574662-22574784)
chr7 (255-316)||(40746168-40746229)
chr7 (208-316)||(21861370-21861477)
chr7 (208-316)||(33834267-33834374)
chr7 (255-314)||(3519863-3519922)
chr7 (255-316)||(2315162-2315223)
chr7 (255-316)||(2404309-2404370)
chr7 (255-316)||(33996215-33996276)
chr7 (255-316)||(48661456-48661517)
chr7 (204-316)||(29469677-29469788)
chr7 (255-309)||(20305416-20305470)
chr7 (280-316)||(3519940-3519976)
[»] chr8 (21 HSPs)
chr8 (204-316)||(8084199-8084310)
chr8 (204-314)||(37868486-37868595)
chr8 (204-316)||(20301333-20301444)
chr8 (204-316)||(21087965-21088076)
chr8 (194-316)||(31197676-31197797)
chr8 (208-308)||(7669495-7669594)
chr8 (208-316)||(11232330-11232437)
chr8 (204-312)||(41790730-41790837)
chr8 (213-316)||(18004230-18004332)
chr8 (202-316)||(12688142-12688255)
chr8 (255-316)||(39960079-39960140)
chr8 (194-316)||(3157460-3157582)
chr8 (255-316)||(3157145-3157206)
chr8 (255-316)||(39052673-39052734)
chr8 (255-316)||(39052830-39052891)
chr8 (208-316)||(5932085-5932192)
chr8 (233-316)||(35682917-35683000)
chr8 (265-316)||(37867969-37868020)
chr8 (193-314)||(10614842-10614963)
chr8 (255-316)||(5675870-5675931)
chr8 (279-316)||(20094696-20094733)
[»] chr6 (9 HSPs)
chr6 (204-316)||(4868713-4868825)
chr6 (208-316)||(13353277-13353384)
chr6 (208-316)||(33796402-33796509)
chr6 (204-303)||(6237621-6237719)
chr6 (255-316)||(6400756-6400817)
chr6 (204-313)||(12330083-12330191)
chr6 (220-313)||(12648487-12648580)
chr6 (255-316)||(17147796-17147857)
chr6 (233-317)||(31961043-31961127)
[»] chr4 (15 HSPs)
chr4 (204-316)||(35788731-35788843)
chr4 (204-316)||(28245662-28245773)
chr4 (204-316)||(35819029-35819140)
chr4 (219-316)||(27634217-27634313)
chr4 (204-316)||(22231209-22231320)
chr4 (208-316)||(35796878-35796985)
chr4 (223-317)||(25324169-25324263)
chr4 (255-316)||(5398611-5398672)
chr4 (204-316)||(40717342-40717453)
chr4 (255-314)||(5398348-5398407)
chr4 (207-316)||(52559642-52559752)
chr4 (255-316)||(50543466-50543527)
chr4 (255-313)||(35645304-35645362)
chr4 (255-313)||(35645593-35645651)
chr4 (255-312)||(4645764-4645821)
[»] chr3 (13 HSPs)
chr3 (204-316)||(16239663-16239775)
chr3 (204-316)||(4155396-4155507)
chr3 (210-316)||(34992684-34992789)
chr3 (220-298)||(11659600-11659678)
chr3 (255-317)||(19954352-19954414)
chr3 (255-316)||(13574821-13574882)
chr3 (255-316)||(20327750-20327811)
chr3 (204-317)||(35038329-35038440)
chr3 (208-299)||(45828095-45828185)
chr3 (208-298)||(33640121-33640211)
chr3 (255-312)||(20303204-20303261)
chr3 (255-316)||(20303286-20303347)
chr3 (204-273)||(54567964-54568032)
[»] chr2 (16 HSPs)
chr2 (204-316)||(2029841-2029952)
chr2 (220-316)||(5711575-5711671)
chr2 (204-316)||(16419339-16419450)
chr2 (208-316)||(14466311-14466418)
chr2 (204-316)||(93255-93366)
chr2 (204-316)||(15124684-15124795)
chr2 (219-316)||(16533399-16533495)
chr2 (255-316)||(17525235-17525296)
chr2 (204-276)||(21383610-21383682)
chr2 (252-316)||(33606190-33606254)
chr2 (204-243)||(38629913-38629952)
chr2 (204-310)||(24395935-24396040)
chr2 (213-303)||(34893506-34893595)
chr2 (255-300)||(10523140-10523185)
chr2 (255-316)||(40149137-40149198)
chr2 (220-316)||(18607145-18607240)
[»] scaffold0045 (1 HSPs)
scaffold0045 (193-306)||(41117-41230)
[»] scaffold0519 (1 HSPs)
scaffold0519 (208-316)||(1992-2099)
[»] scaffold0048 (1 HSPs)
scaffold0048 (204-316)||(81914-82024)
[»] scaffold0459 (1 HSPs)
scaffold0459 (233-316)||(13197-13281)
[»] scaffold0366 (1 HSPs)
scaffold0366 (233-316)||(10838-10922)


Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Original strand, 17143014 - 17143562
Alignment:
Q  18 tcttcaaatggtgttcctaacaaaaggaagaaataggaaacattaactactaaatattcaatgagcttattatgatgt-atagagtcctacatcatacat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17143014 tcttcaaatggtgttcctaacaaaaggaagaaataggaaacattaaccactaaatattcaatgagcttattatgatgttatagagtcctacatcatacat 17143113  T
Q  117 cgaacgatatatagtttgaacatgtatttataagtgaggacaatctttaactcataaatcaatttggtaaggataaattaggctcaacacgatttttaag 216  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||| | ||||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  17143114 cgaacgatatatagtttgaacatgtgtttataagtgaagataatcttcacctcataaatcagttttgtaaggataagttaggctcaacacgatttttaag 17143213  T
Q  217 acggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  17143214 acggtatcag--tctcctccaagatcctttgagctacttgctatcaagtttccgctattgaaccacccaccatttatgtccacgaactaagtccaatagt 17143311  T
Q  317 aaaatctcgtagttatgcagtcaaaatattcaagctattgaacaaaattggatttattttcatcaagttgagggtaaaatacaactcaaaacatgagttg 416  Q
    | |||||| |||||||||||||||||||||||||||         ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17143312 agaatctcttagttatgcagtcaaaatattcaagct--------caattggatttattttcatcaaattgagggtaaaatacaactcaaaacatgagttg 17143403  T
Q  417 tctacccttcatttttaaaagctcattcatactatatgactggatataattcaattccttcactttacacttatgtgtcaacatgtcccatatcaaggga 516  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17143404 tctacccttcatttttaaaagctcattcatactatatgactggagataattcaattccttcactttacacttatgtgccaacatgtcccatatcaaggga 17143503  T
Q  517 tcacttttgatttgaattttgattgtgtgcattgtgacaacacacaatcagtaacatccaaaacctctgat 587  Q
    ||||            ||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  17143504 tcac------------ttttgattgtgtgtattgtgacatcacacaaccagtaacatccaaaacctctgat 17143562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 24270118 - 24270006
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||||||||| |||||||||| |||||||||||||| |||  | || |||||||| ||||||| ||| |  |||||||||| ||||||||||||||    
T  24270118 cacgatttttaagatggtatcagagcctcctccaagatccattgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaac 24270019  T
Q  304 taagcccaatagt 316  Q
     |||| |||||||    
T  24270018 caagctcaatagt 24270006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 24346749 - 24346637
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||||||||| |||||||||| |||||||||||||| |||  | || |||||||| ||||||| ||| |  |||||||||| ||||||||||||||    
T  24346749 cacgatttttaagatggtatcagagcctcctccaagatccattgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaac 24346650  T
Q  304 taagcccaatagt 316  Q
     |||| |||||||    
T  24346649 caagctcaatagt 24346637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 41667005 - 41666893
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| |||||||||||||| |||  | || |||||||| ||||||| ||| |  |||||||||| ||||||||||||||    
T  41667005 cacgatttctaagatggtatcagagcctcctccaagatccgttgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaac 41666906  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  41666905 caagcccaatagt 41666893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 95513 - 95402
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| |||||||||| |||  | || |||||||| |||||||| || |  |||||||||| ||||||||||||||    
T  95513 cacgatttctaagatggtatcagagcctc-tccaagatccattgggccacctgctatcaggtttccgccatcgggccacccaccatttatgtccacgaac 95415  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  95414 caagcccaatagt 95402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 204 - 314
Target Start/End: Complemental strand, 25258313 - 25258204
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| || ||||||||||| |||  | || |||||||| ||||||||||| | ||||||||| | ||||||||||||||    
T  25258313 cacgatttctaagatggtatcagag-cttctccaagatccattgggccacctgctatcaggtttccgctatcggaccacccacaatttatgtccacgaac 25258215  T
Q  304 taagcccaata 314  Q
     ||||| ||||    
T  25258214 caagccaaata 25258204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 204 - 314
Target Start/End: Complemental strand, 25322103 - 25321994
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| || ||||||||||| |||  | || |||||||| ||||||||||| | ||||||||| | ||||||||||||||    
T  25322103 cacgatttctaagatggtatcagag-cttctccaagatccattgggccacctgctatcaggtttccgctatcggaccacccacaatttatgtccacgaac 25322005  T
Q  304 taagcccaata 314  Q
     ||||| ||||    
T  25322004 caagccaaata 25321994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 316
Target Start/End: Complemental strand, 6919452 - 6919330
Alignment:
Q  194 ttaggctcaac-acgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagtta 292  Q
    ||||||||||| ||||||||||||| ||||||| || ||| || ||||||| ||||   |  |||||||| ||||||||| | | ||||| ||||| |||    
T  6919452 ttaggctcaaccacgatttttaagatggtatcaaagcctcttc-aagatccattgagtcatctgctatcaggtttccgctttcggaccactcaccattta 6919354  T
Q  293 tgtccacgaactaagcccaatagt 316  Q
    ||||||||||| ||||||||||||    
T  6919353 tgtccacgaaccaagcccaatagt 6919330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 9368717 - 9368778
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||||||||| |||||||||||  ||||||||||||| || |||||||||    
T  9368717 tgctatcaggtttccgctattggaccacccaccatgtatgtccacgaaccaaacccaatagt 9368778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 309
Target Start/End: Original strand, 15480394 - 15480498
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| || ||||||| |||  | || |||||||| |||||||||||||  |||||||||| ||||||||| ||||    
T  15480394 cacgatttctaagatggtatcagagcctcttc-aagatccattgggccacctgctatcaggtttccgctattgggccacccaccatttatgtccatgaac 15480492  T
Q  304 taagcc 309  Q
     |||||    
T  15480493 caagcc 15480498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 20510885 - 20510778
Alignment:
Q  207 gatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaa 306  Q
    ||||||||||| ||||||||||  || ||||||||||  ||  |||| |||||||| ||||| |||||||  |||||| ||| |||||||||||||| ||    
T  20510885 gatttttaagatggtatcagagcgtc-tccaagatccactgggctacctgctatcaggtttctgctattgggccaccc-ccatttatgtccacgaaccaa 20510788  T
Q  307 gcccaatagt 316  Q
    ||||||||||    
T  20510787 gcccaatagt 20510778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 17016069 - 17016011
Alignment:
Q  258 tatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||| ||||||||||| | ||||||||||| |||||||||||||| ||| ||||||||    
T  17016069 tatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagtccaatagt 17016011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 17352676 - 17352572
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||| ||||| |||||||||| ||| || ||||||||| || | ||||||||||| |||||||||||||   |||| |||  |||||||||||||| |||    
T  17352676 atttctaagatggtatcagagcctcttc-aagatcctt-gagccacttgctatcaggtttccgctattgggtcacctaccgtttatgtccacgaaccaag 17352579  T
Q  308 cccaata 314  Q
    |||||||    
T  17352578 cccaata 17352572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 33337436 - 33337374
Alignment:
Q  254 ttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||| |||||||| || |  |||||||||| |||||||||||||| ||||||||||||    
T  33337436 ttgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaagcccaatagt 33337374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 8081311 - 8081250
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| || ||| |||| | ||||||||||| |||||||||||||| ||||||||||||    
T  8081311 tgctatcaggtatcccctatcggaccacccaccatttatgtccacgaaccaagcccaatagt 8081250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 17150491 - 17150387
Alignment:
Q  194 ttaggctcaac-acgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagtta 292  Q
    ||||||||||| ||||||||||||| |||||||||| ||| || ||||||| |||  | || | |||||| ||||||||||| |  |||||||||| |||    
T  17150491 ttaggctcaactacgatttttaagatggtatcagagcctcttc-aagatccattgggccacctactatcaggtttccgctatcgggccacccaccattta 17150393  T
Q  293 tgtcca 298  Q
    ||||||    
T  17150392 tgtcca 17150387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 43117769 - 43117830
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||||||| | |||||||| || |||||||||||||| |||| |||||||    
T  43117769 tgctatcaggtttccgctatcggaccacccatcatttatgtccacgaaccaagctcaatagt 43117830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 24531671 - 24531782
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| || | ||||| |||  | || ||||||||  |||| | ||| |||||||||| || ||||||||||||||    
T  24531671 cacgatttctaagatggtatcagagcctc-tctatgatccattgggccacctgctatcagttttctgttatcgaaccacccaacatttatgtccacgaac 24531769  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  24531770 caagcccaatagt 24531782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 35167642 - 35167558
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccacca 288  Q
    |||||||| ||||| | ||||||||||||||||||||||  ||  ||||| |||||||| ||||  | |||||| ||||||||||    
T  35167642 cacgatttctaagatgatatcagagtctcctccaagatctgttagactacatgctatcatgtttatgttattgagccacccacca 35167558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 11896375 - 11896305
Alignment:
Q  233 ctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    ||||||||||| |||  | || | |||||| ||||||||||| | ||||||||||| ||||||||||||||    
T  11896375 ctccaagatccattgtgccacctactatcaggtttccgctatcggaccacccaccatttatgtccacgaac 11896305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 11896108 - 11896051
Alignment:
Q  259 atcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||| ||||| ||||| ||||||||||||| |||||||| ||||| || |||||||||    
T  11896108 atcaggtttcagctatcgaaccacccaccatttatgtccgcgaaccaaacccaatagt 11896051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 15590060 - 15590121
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||||||||||||||| |  | || ||||| |||||||||||||| || |||||||||    
T  15590060 tgctatcaagtttccgctatcgggctactcaccatttatgtccacgaaccaaacccaatagt 15590121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 18333661 - 18333600
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| |||| |||||| |  |||||||||| |||||||||||||| ||||||| ||||    
T  18333661 tgctatcaggttttcgctatcgggccacccaccatttatgtccacgaaccaagcccattagt 18333600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 30770222 - 30770186
Alignment:
Q  279 ccacccaccagttatgtccacgaactaagcccaatag 315  Q
    |||||||||| |||||||||||||| |||||||||||    
T  30770222 ccacccaccatttatgtccacgaaccaagcccaatag 30770186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 194 - 316
Target Start/End: Complemental strand, 39348375 - 39348253
Alignment:
Q  194 ttaggctcaacacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttat 293  Q
    |||||| ||||||||||| ||||| |||||||||| |||||||||| ||| |||  | || |||||||| |||||| |||| | ||||||||||| ||||    
T  39348375 ttaggcccaacacgatttctaagatggtatcagagcctcctccaaggtccattgggccacctgctatcaggtttccactatcggaccacccaccatttat 39348276  T
Q  294 gtccacgaactaagcccaatagt 316  Q
    |||||||||| ||||||||||||    
T  39348275 gtccacgaaccaagcccaatagt 39348253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 4112783 - 4112676
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||| ||||| |||||||||| ||| |||||||||| ||| || || |||||||| ||||||||||| ||||||||||||| ||||||| |||||| |||    
T  4112783 atttctaagatggtatcagagcctc-tccaagatccattggaccacctgctatcaggtttccgctatcgaaccacccaccatttatgtcaacgaaccaag 4112685  T
Q  308 cccaatagt 316  Q
    |||||||||    
T  4112684 cccaatagt 4112676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 38733223 - 38733330
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||||||| |||||||||| ||| || || |||||||| |||||||||||    |||||||||| |||| || ||||||    
T  38733223 cacgatttctaagatggtatcagagtctc-tccaagatccattggaccacctgctatcaggtttccgctat----ccacccaccatttatatctacgaac 38733317  T
Q  304 taagcccaatagt 316  Q
    |||||||||||||    
T  38733318 taagcccaatagt 38733330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 4113018 - 4112907
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||| ||| ||| |||||||||| |||| | ||   |||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  4113018 cacgatttctaagatggtatcggagcctc-tccaagatccattgagccaccatctatcaggtttccgctattggaccacccaccatttatgtccacgaac 4112920  T
Q  304 taagcccaatagt 316  Q
     |||| |||||||    
T  4112919 caagctcaatagt 4112907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 25713258 - 25713341
Alignment:
Q  233 ctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||||| |||  | || |||||||||||||||||||| |  |||||||||| |||||||||||||| ||||||||||||    
T  25713258 ctccaagatccattgggccacctgctatcaagtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagt 25713341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 35772101 - 35772212
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| || ||| ||||||| |||  | |  |||||||| ||||||||||| |  |||||||||| ||||||||||||||    
T  35772101 cacgatttctaagatggtatcagagccttctc-aagatccattgggccatctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaac 35772199  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  35772200 caagcccaatagt 35772212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 7307843 - 7307904
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||||| ||  ||||||||    
T  7307843 tgctatcaggtttccgctattggaccacccaccatttatgtccacgaaccaaatccaatagt 7307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 33156805 - 33156917
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| ||||| |||| || ||||||||||| |||    || |||||||| ||||||||||| |  ||| |||||| |||||||||||||     
T  33156805 cacgatttctaagatggtattagagcctactccaagatccgttggttcacctgctatcaggtttccgctatcgggccatccaccatttatgtccacgaat 33156904  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  33156905 caagcccaatagt 33156917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 26173418 - 26173360
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaat 313  Q
    |||||||| ||||||||||| | ||| ||||||| ||||||||||||||||||| ||||    
T  26173418 tgctatcaggtttccgctatcggaccccccaccatttatgtccacgaactaagctcaat 26173360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 26176982 - 26177091
Alignment:
Q  206 cgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaacta 305  Q
    |||||| ||||| | |||||||| ||| |||||||||| |||  | || ||||||||  |||||||||| | ||||||||||| |||| ||||||||| |    
T  26176982 cgatttctaagatgatatcagagcctc-tccaagatccattgggccacctgctatcagatttccgctatcggaccacccaccatttatatccacgaacca 26177080  T
Q  306 agcccaatagt 316  Q
    || ||||||||    
T  26177081 agtccaatagt 26177091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 204 - 313
Target Start/End: Original strand, 35892128 - 35892236
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||||||| || ||||| | |||  | |||||||||||  |||| ||||| |   ||||||||| |||||||||||||     
T  35892128 cacgatttctaagaaggtatcagagtctcttc-aagattcattgggccacttgctatcatatttctgctatcggggcacccaccatttatgtccacgaat 35892226  T
Q  304 taagcccaat 313  Q
    ||||||||||    
T  35892227 taagcccaat 35892236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 2859565 - 2859528
Alignment:
Q  279 ccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  2859565 ccacccaccatttatgtccacgaaccaagcccaatagt 2859528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 25145729 - 25145621
Alignment:
Q  207 gatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaa 306  Q
    ||||| ||||| | |||||||| ||| |||||||||  |||| | || |||||||| ||||||| ||| | ||||||||||| | |||||||||||  ||    
T  25145729 gatttctaagatgatatcagagcctc-tccaagatctattgacccacctgctatcaggtttccgttatcggaccacccaccattaatgtccacgaatcaa 25145631  T
Q  307 gcccaatagt 316  Q
    || |||||||    
T  25145630 gctcaatagt 25145621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 52961469 - 52961530
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||||||| |  ||||||||||||||||| ||||||  |||| |||||||    
T  52961469 tgctatcaggtttccgctatcgggccacccaccagttatgtacacgaaacaagctcaatagt 52961530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 369779 - 369815
Alignment:
Q  280 cacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  369779 cacccaccatttatgtccacgaaccaagcccaatagt 369815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 27413419 - 27413530
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| | |||||||| ||| |||||||||  ||  || || || |||||  |||||||||| |  |||||||||| |||||||||||||     
T  27413419 cacgatttctaagatgatatcagagcctc-tccaagatctattagaccacctgttatcagatttccgctatcgggccacccaccatttatgtccacgaat 27413517  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  27413518 caagcccaatagt 27413530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 5766 - 5655
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| |||||||||| |||| | || |||||||| ||||||||||| | ||||||||||| ||||||||||||||    
T  5766 cacgatttctaagatggtatcagagcctc-tccaagatccattgagccacctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaac 5668  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  5667 caagcccaatagt 5655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 25620208 - 25620319
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| |||||||||| |||  | || |||||||| |||||||||||||  |||||||||| ||||||||||||||    
T  25620208 cacgatttctaagatggtatcagagcctc-tccaagatccattgggccacctgctatcaggtttccgctattgggccacccaccatttatgtccacgaac 25620306  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  25620307 caagcccaatagt 25620319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 317
Target Start/End: Original strand, 4886401 - 4886513
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||| ||||| |||||||||| |||  | || ||||||||||||||  |||| || |||||||||| ||||||||||||||    
T  4886401 cacgatttctaagatggtatcagggtctc-tccaagatccattgggccacctgctatcaagtttctactatcgagccacccaccatttatgtccacgaac 4886499  T
Q  304 taagcccaatagta 317  Q
     |||||||||||||    
T  4886500 caagcccaatagta 4886513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 36277238 - 36277127
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| | |||||||| ||| |||||||||| |||  | || | |||||| ||||||||||| | ||||||||||| ||||||||||||||    
T  36277238 cacgatttctaagatgttatcagagcctc-tccaagatccattgggccacctactatcaggtttccgctatcggaccacccaccatttatgtccacgaac 36277140  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  36277139 caagcccaatagt 36277127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 1596669 - 1596776
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||| ||||| |||||||||| ||| |||||||||| |||  | || || ||||| ||||||||||| |  |||||||||| |||||||||||||| |||    
T  1596669 atttctaagatggtatcagagcctc-tccaagatccattgggccacatgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaag 1596767  T
Q  308 cccaatagt 316  Q
    |||||||||    
T  1596768 cccaatagt 1596776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 30727363 - 30727255
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||||||||| |||||||||||||  ||||||||   |||  | || | |||||| |||||||||||||  |||||||||| |||| ||||| |||||||    
T  30727363 atttttaagatggtatcagagtctaatccaagatttgttgggccaccttctatcaggtttccgctattgggccacccaccatttatatccacaaactaag 30727264  T
Q  308 cccaatagt 316  Q
    |||||||||    
T  30727263 cccaatagt 30727255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 316
Target Start/End: Original strand, 22574662 - 22574784
Alignment:
Q  194 ttaggctcaac-acgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagtta 292  Q
    ||||||||||| || |||| || || ||||| |||||||| |||||||||| |||  | || |||||||| ||||| ||||| | ||||||||||| |||    
T  22574662 ttaggctcaaccacaatttctatgatggtataagagtctc-tccaagatccattgggccacctgctatcaggtttcagctatcggaccacccaccattta 22574760  T
Q  293 tgtccacgaactaagcccaatagt 316  Q
    |||| |||||| ||||||||||||    
T  22574761 tgtctacgaaccaagcccaatagt 22574784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 40746229 - 40746168
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| |||| || ||| ||||||||||||| |||||||||||||| ||||||||||||    
T  40746229 tgctatcaggttttcgttatcgaaccacccaccatttatgtccacgaaccaagcccaatagt 40746168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 21861370 - 21861477
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||| ||||| |||||||||| ||| |||||||||| |||  | || || ||||| ||||||||||| |  |||||||||| |||||||||||||| |||    
T  21861370 atttctaagatggtatcagagcctc-tccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaag 21861468  T
Q  308 cccaatagt 316  Q
    || ||||||    
T  21861469 cctaatagt 21861477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 33834267 - 33834374
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||| ||||| |||||||||| ||| |||||||||| |||  | || |||||||| |||| | |||| |  |||||||||| |||||||||||||| |||    
T  33834267 atttctaagatggtatcagagcctc-tccaagatccattgggccacctgctatcaggttttccctatcgggccacccaccatttatgtccacgaaccaag 33834365  T
Q  308 cccaatagt 316  Q
    |||||||||    
T  33834366 cccaatagt 33834374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 3519922 - 3519863
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaata 314  Q
    |||||||| ||||||||||| |  |||||||||| |||||||||||||| ||||||||||    
T  3519922 tgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaata 3519863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 2315223 - 2315162
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||  ||||||| || | ||||||||||| |||||||||||||| ||||||||||||    
T  2315223 tgctatcagatttccgcaatcggaccacccaccatttatgtccacgaaccaagcccaatagt 2315162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 2404370 - 2404309
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||||||||| |||||| |||  |||||||||||||| |||| |||||||    
T  2404370 tgctatcaggtttccgctattggaccacctaccgtttatgtccacgaaccaagcgcaatagt 2404309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 33996276 - 33996215
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| |||||||| || |  |||||||||| |||||||||||||| ||||||||||||    
T  33996276 tgctatcaggtttccgcaatcgggccacccaccatttatgtccacgaaccaagcccaatagt 33996215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 48661517 - 48661456
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||||| | |  |||||||||| |||||||||||||| ||||||||||||    
T  48661517 tgctatcaggtttccgctttcgggccacccaccatttatgtccacgaaccaagcccaatagt 48661456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 29469677 - 29469788
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||| | |||||||||| ||| |||||||||| |||  | || || ||||| | ||||||||| |  |||||||||| |||||||||||||     
T  29469677 cacgatttctaatatggtatcagagcctc-tccaagatccattgggccacctgttatcaggcttccgctatcgggccacccaccatttatgtccacgaat 29469775  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  29469776 caagcccaatagt 29469788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 20305416 - 20305470
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcc 309  Q
    |||||||| ||||||||||| |  |||||||||| |||||||||||||| |||||    
T  20305416 tgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcc 20305470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 3519976 - 3519940
Alignment:
Q  280 cacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  3519976 cacccaccatttatgtccacgaaccaagcccaatagt 3519940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 8084199 - 8084310
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| |||||||||| |||  | || |||||||| |||| |||||||| | ||||||||| ||||||||||||||    
T  8084199 cacgatttctaagatggtatcagagcctc-tccaagatccattgggccacatgctatcaggttttcgctattggatcacccaccatttatgtccacgaac 8084297  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  8084298 caagcccaatagt 8084310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 204 - 314
Target Start/End: Complemental strand, 37868595 - 37868486
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||||||||| ||||||| || ||| |||||||||| |||  | ||  |||||||||||||||||||||  |||||||||| |||||| |||||||    
T  37868595 cacgatttttaagatggtatcatagcctc-tccaagatccattgggccacccgctatcaagtttccgctattgggccacccaccatttatgtacacgaac 37868497  T
Q  304 taagcccaata 314  Q
     ||||||||||    
T  37868496 caagcccaata 37868486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 20301333 - 20301444
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| || ||||||| |||  | || |||||||| ||||||||||| | ||||||||||| ||||||| ||||||    
T  20301333 cacgatttctaagatggtatcagagcctcttc-aagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtctacgaac 20301431  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  20301432 caagcccaatagt 20301444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 21087965 - 21088076
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| || ||||||| |||  | || |||||||| ||||||||||| | ||||||||||| ||||||| ||||||    
T  21087965 cacgatttctaagatggtatcagagcctcttc-aagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtctacgaac 21088063  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  21088064 caagcccaatagt 21088076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 194 - 316
Target Start/End: Original strand, 31197676 - 31197797
Alignment:
Q  194 ttaggctcaacacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttat 293  Q
    |||||| ||||  ||||| ||||| |||||||||| ||| ||| |||||| |||  | || |||||||| ||||||||||| | ||||||||||| ||||    
T  31197676 ttaggcccaaccagatttctaagatggtatcagagcctc-tccgagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttat 31197774  T
Q  294 gtccacgaactaagcccaatagt 316  Q
    |||||||||| |||| |||||||    
T  31197775 gtccacgaaccaagctcaatagt 31197797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 7669495 - 7669594
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||||||||| ||||||| |||||| || ||||||| |||| | || |||||||| |||||| |||| | ||||||||||| |||||||||||||| |||    
T  7669495 atttttaagatggtatcaaagtctcttc-aagatccattgagccacctgctatcaggtttccactatcggaccacccaccatttatgtccacgaaccaag 7669593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 11232437 - 11232330
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||| ||||| |||||||||| ||| |||||||||| |||  | || || ||||| ||||||||||| ||  ||||||||| |||||||||||||| |||    
T  11232437 atttctaagatggtatcagagcctc-tccaagatccattgggccacctgttatcaggtttccgctatcgagtcacccaccatttatgtccacgaaccaag 11232339  T
Q  308 cccaatagt 316  Q
    |||||||||    
T  11232338 cccaatagt 11232330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 204 - 312
Target Start/End: Original strand, 41790730 - 41790837
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| || ||||||| |||  | || |||||||| ||||||||||| || |||||||||| ||||||||| ||||    
T  41790730 cacgatttctaagatggtatcagagcctcttc-aagatccattgggccacctgctatcaggtttccgctatcgagccacccaccatttatgtccatgaac 41790828  T
Q  304 taagcccaa 312  Q
     ||||||||    
T  41790829 caagcccaa 41790837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 18004332 - 18004230
Alignment:
Q  213 taagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaa 312  Q
    ||||| |||||||||| ||| |||||||||| |||  | || |||||||| ||||||||||| |  |||||||||| |||||||||||||| ||||| ||    
T  18004332 taagatggtatcagagcctc-tccaagatccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcctaa 18004234  T
Q  313 tagt 316  Q
    ||||    
T  18004233 tagt 18004230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 202 - 316
Target Start/End: Original strand, 12688142 - 12688255
Alignment:
Q  202 aacacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacga 301  Q
    |||||||||| ||||| | ||| |||| ||| || ||||||| |||  | || |||||||| |||||  ||||||  |||||||||| ||||||||||||    
T  12688142 aacacgatttctaagatgatattagagcctcttc-aagatccattgggccacctgctatcaggtttcttctattgggccacccaccatttatgtccacga 12688240  T
Q  302 actaagcccaatagt 316  Q
    |||||||||||||||    
T  12688241 actaagcccaatagt 12688255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 39960079 - 39960140
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||||||| || | |||||||| |||||||||||||| ||||||||||||    
T  39960079 tgctatcaggtttccgctatcgagctacccaccatttatgtccacgaaccaagcccaatagt 39960140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 194 - 316
Target Start/End: Complemental strand, 3157582 - 3157460
Alignment:
Q  194 ttaggctcaac-acgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagtta 292  Q
    ||||||||||| || |||| ||||| | |||||||| ||| ||||| |||| ||| || || |||||||| |||| |||||| |   ||||||||| |||    
T  3157582 ttaggctcaaccaccatttataagatgatatcagagcctc-tccaaaatccattggaccacctgctatcaggttttcgctatcgggacacccaccattta 3157484  T
Q  293 tgtccacgaactaagcccaatagt 316  Q
    ||||||||||| ||||||||||||    
T  3157483 tgtccacgaaccaagcccaatagt 3157460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 3157206 - 3157145
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||||||| |   ||||||||| |||||||||||||| ||||||||||||    
T  3157206 tgctatcaggtttccgctatcgggacacccaccatttatgtccacgaaccaagcccaatagt 3157145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 39052734 - 39052673
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| |||||||||||    |||||||||| |||||||||||||| ||||||||||||    
T  39052734 tgctatcaggtttccgctatccggccacccaccatttatgtccacgaaccaagcccaatagt 39052673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 39052891 - 39052830
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| |||||||||||    |||||||||| |||||||||||||| ||||||||||||    
T  39052891 tgctatcaggtttccgctatccggccacccaccatttatgtccacgaaccaagcccaatagt 39052830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 5932192 - 5932085
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||||||||| |||||||||| ||| |||||||||| ||| || || | |||||| ||||||| ||| |  |||||||||| ||||||| || ||| |||    
T  5932192 atttttaagatggtatcagagcctc-tccaagatccattggaccacctactatcacgtttccgttatcgggccacccaccatttatgtcgacaaaccaag 5932094  T
Q  308 cccaatagt 316  Q
    | |||||||    
T  5932093 cgcaatagt 5932085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 35683000 - 35682917
Alignment:
Q  233 ctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||||| |||  | || |||||| | ||||||||||| |  |||||||||| |||||||||||||| |||| |||||||    
T  35683000 ctccaagatccattgggccacctgctattaggtttccgctatcgggccacccaccatttatgtccacgaaccaagctcaatagt 35682917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 37868020 - 37867969
Alignment:
Q  265 tttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||||||  |||||||||| |||||||||||||| ||| ||||||||    
T  37868020 tttccgctattgggccacccaccatttatgtccacgaaccaaggccaatagt 37867969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 314
Target Start/End: Complemental strand, 10614963 - 10614842
Alignment:
Q  193 attaggctcaac-acgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagtt 291  Q
    |||||||||||| ||||||| ||||| | ||||| || ||| |||||||||| ||| || || ||| |||||||||  ||||| | | || |||||| ||    
T  10614963 attaggctcaaccacgatttataagatgatatcatagcctc-tccaagatccattggaccacctgcaatcaagtttttgctatcggaacatccaccattt 10614865  T
Q  292 atgtccacgaactaagcccaata 314  Q
     ||||||||||| ||||||||||    
T  10614864 gtgtccacgaaccaagcccaata 10614842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 5675931 - 5675870
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||||||| |||||| |   ||||||||| |||||||||||||| ||| ||||||||    
T  5675931 tgctatcaagttttcgctatcgggtcacccaccatttatgtccacgaaccaagtccaatagt 5675870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 20094733 - 20094696
Alignment:
Q  279 ccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  20094733 ccacccaccatttatgtccacgaaccaagcccaatagt 20094696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 4868825 - 4868713
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||||||||||||||  ||  | || |||||||| ||||||| ||| |  |||||||||| ||||||||||||||    
T  4868825 cacgatttctaagatggtatcagagcctcctccaagatccgctgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaac 4868726  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  4868725 caagcccaatagt 4868713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 13353277 - 13353384
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||| ||||| |||||||||| ||| |||||||||| |||  | || || ||||| ||||||||||| |  |||||||||| |||||||||||||| |||    
T  13353277 atttctaagatggtatcagagcctc-tccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaag 13353375  T
Q  308 cccaatagt 316  Q
    |||||||||    
T  13353376 cccaatagt 13353384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 33796402 - 33796509
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||| ||||| |||||||||| ||| |||||||||| |||  | || || ||||| ||||||||||| |  |||||||||| |||||||||||||| |||    
T  33796402 atttctaagatggtatcagagcctc-tccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaag 33796500  T
Q  308 cccaatagt 316  Q
    |||||||||    
T  33796501 cccaatagt 33796509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 303
Target Start/End: Complemental strand, 6237719 - 6237621
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    ||||| || ||||| ||||| |||||||| || ||||||| ||| || |||||||| || ||||||||||| | ||||||||||| ||||||||||||||    
T  6237719 cacgacttctaagatggtattagagtctcttc-aagatccattggaccacttgctaccaggtttccgctatcggaccacccaccatttatgtccacgaac 6237621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 6400817 - 6400756
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||| ||||| | ||||||||||| |||||||||||||| ||||||||||||    
T  6400817 tgctatcaggtttctgctatcggaccacccaccatttatgtccacgaaccaagcccaatagt 6400756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 313
Target Start/End: Complemental strand, 12330191 - 12330083
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||| | |||||||||| ||| |||||||||| |||  | || |||||||| |||||||| || |  |||||||||| ||||||||||||||    
T  12330191 cacgatttctaatatggtatcagagcctc-tccaagatccattgggccacctgctatcaggtttccgccatcgggccacccaccatttatgtccacgaac 12330093  T
Q  304 taagcccaat 313  Q
     |||||||||    
T  12330092 caagcccaat 12330083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 313
Target Start/End: Original strand, 12648487 - 12648580
Alignment:
Q  220 gtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaat 313  Q
    ||||||||| ||||   ||||||| ||| ||||  ||||||||||||||| |||| ||  |||| |||| |||||| |||||| ||||||||||    
T  12648487 gtatcagagcctccgttaagatccattggactatctgctatcaagtttccactatcgagtcacctaccatttatgttcacgaattaagcccaat 12648580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 17147857 - 17147796
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| |||||||||||     ||||||||| |||||||||||||| ||||||||||||    
T  17147857 tgctatcaggtttccgctatcaggtcacccaccatttatgtccacgaaccaagcccaatagt 17147796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 31961043 - 31961127
Alignment:
Q  233 ctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagta 317  Q
    ||||||||||| |||  | || |||||||| ||||| ||||| |  || ||||||| ||||||||||| || |||||||||||||    
T  31961043 ctccaagatccattgggccacctgctatcaggtttctgctatcgtgccccccaccatttatgtccacggaccaagcccaatagta 31961127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 35788731 - 35788843
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| |||||||||||||| |||  | || |||||||| ||||||| |||    |||||||||| ||||||||||||||    
T  35788731 cacgatttctaagatggtatcagagcctcctccaagatccgttgggccacctgctatcaggtttccgttatcaggccacccaccatttatgtccacgaac 35788830  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  35788831 caagcccaatagt 35788843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 28245773 - 28245662
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||| | |||||||||| ||| |||||||||| |||  | || |||||||| ||||||||||| |  |||||||||| ||||||||||||||    
T  28245773 cacgatttctaatatggtatcagagcctc-tccaagatccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaac 28245675  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  28245674 caagcccaatagt 28245662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 35819140 - 35819029
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||||||||| || ||||||||||| || ||||||| |||  | || |||||||| ||||||||||| |   ||||||||| ||||||||||||||    
T  35819140 cacgatttttaagatggcatcagagtctc-tctaagatccattgggccacctgctatcaggtttccgctatcgggtcacccaccatttatgtccacgaac 35819042  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  35819041 caagcccaatagt 35819029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 27634313 - 27634217
Alignment:
Q  219 ggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||||| ||| |||||||||| ||| || ||||||||||| ||||| ||||| | |||||||||   |||||||||||||| ||||||||||||    
T  27634313 ggtatcagagcctc-tccaagatccattggaccacttgctatcaggtttctgctatcggaccacccactgtttatgtccacgaaccaagcccaatagt 27634217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 22231320 - 22231209
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| ||||| |||| |||  | || |||||||| ||||||||||| |  ||||| |||| ||||||||||||||    
T  22231320 cacgatttctaagatggtatcagagcctc-tccaaaatccattgggccacctgctatcaggtttccgctatcgggccacctaccatttatgtccacgaac 22231222  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  22231221 caagcccaatagt 22231209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 35796985 - 35796878
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||| ||||| |||||||||| ||| || | ||||| ||| ||||| |||||||| ||||||||||| |  |||||||||| |||| ||||||||| |||    
T  35796985 atttctaagatggtatcagagcctcttcga-gatccattggactacctgctatcaggtttccgctatcgggccacccaccatttatctccacgaaccaag 35796887  T
Q  308 cccaatagt 316  Q
    |||||||||    
T  35796886 cccaatagt 35796878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 25324263 - 25324169
Alignment:
Q  223 tcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagta 317  Q
    |||||| |||||||||||||| |||  | || |||||||||||||||||||| |  |||||||||| |||| || ||| || |||||||||||||    
T  25324263 tcagagcctcctccaagatccattgggccacctgctatcaagtttccgctatcgggccacccaccatttatatctacgcaccaagcccaatagta 25324169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 5398672 - 5398611
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||||||| | ||||||||||| |||||||||||||| ||||| ||||||    
T  5398672 tgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagccaaatagt 5398611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 40717453 - 40717342
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| ||||| |||| |||  | || ||| |||| ||||||||||| | ||||||||||| |||||||||| |||    
T  40717453 cacgatttctaagatggtatcagagcctc-tccaatatccattgggccacctgccatcaggtttccgctatcggaccacccaccatttatgtccacaaac 40717355  T
Q  304 taagcccaatagt 316  Q
     ||||| ||||||    
T  40717354 caagcctaatagt 40717342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 5398407 - 5398348
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaata 314  Q
    |||||||| |||||| |||| | ||||||||||| |||||||||||||| ||||||||||    
T  5398407 tgctatcaggtttcccctatcggaccacccaccatttatgtccacgaaccaagcccaata 5398348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 52559642 - 52559752
Alignment:
Q  207 gatttttaagacggtatcagagtctcctccaagatcc-tttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaacta 305  Q
    ||||| |||||  ||||||||| |||||| ||||||| ||||  | || |||||||||||||  | ||| |  |||||||||| |||||||||||||| |    
T  52559642 gatttctaagatagtatcagagcctcctcaaagatccgtttgggccacctgctatcaagtttatgttatcgggccacccaccatttatgtccacgaacca 52559741  T
Q  306 agcccaatagt 316  Q
    |||||||||||    
T  52559742 agcccaatagt 52559752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 50543527 - 50543466
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||| ||| |  |||||||||| |||||||||||||| ||||||||||||    
T  50543527 tgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagt 50543466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 35645362 - 35645304
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaat 313  Q
    |||||||||||||||||||| |  |||||| ||| |||||||||||||| || ||||||    
T  35645362 tgctatcaagtttccgctatcgggccacccgccatttatgtccacgaaccaaacccaat 35645304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 35645651 - 35645593
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaat 313  Q
    |||||||||||||||||||| |  |||||| ||| |||||||||||||| || ||||||    
T  35645651 tgctatcaagtttccgctatcgggccacccgccatttatgtccacgaaccaaacccaat 35645593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 4645764 - 4645821
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaa 312  Q
    |||||||| ||||||||||| |  |||||||||| |||||||||||||  ||||||||    
T  4645764 tgctatcaggtttccgctatcgggccacccaccaattatgtccacgaatcaagcccaa 4645821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 16239663 - 16239775
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| |||||||||||||| ||   | || |||||||| ||||||| ||| || |||||||||| ||||||||||||||    
T  16239663 cacgatttctaagatggtatcagagcctcctccaagatccgtttggccacctgctatcaggtttccgttatcgagccacccaccatttatgtccacgaac 16239762  T
Q  304 taagcccaatagt 316  Q
     |||| |||||||    
T  16239763 caagctcaatagt 16239775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 4155396 - 4155507
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||||||| |||||||| | |||  | || |||||||| ||||||||||| |  |||||||||  ||||||| ||||||    
T  4155396 cacgatttctaagatggtatcagagtctc-tccaagattcattgggccacctgctatcaggtttccgctatcgggccacccaccgtttatgtcgacgaac 4155494  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  4155495 caagcccaatagt 4155507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 316
Target Start/End: Original strand, 34992684 - 34992789
Alignment:
Q  210 ttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcc 309  Q
    |||||||| |||||||||||||| |||||| ||| |||  | || |||||||| ||||||||| | |   ||||||||| |||||||||||||| |||||    
T  34992684 ttttaagatggtatcagagtctc-tccaaggtccattgggccacctgctatcaggtttccgctgtcgggtcacccaccatttatgtccacgaaccaagcc 34992782  T
Q  310 caatagt 316  Q
    |||||||    
T  34992783 caatagt 34992789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 11659678 - 11659600
Alignment:
Q  220 gtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtcca 298  Q
    |||| |||| |||||||||||||| ||| || || |||||||| |||| |||||| | ||||||||||| |||||||||    
T  11659678 gtattagagcctcctccaagatccgttggacaacctgctatcaggttttcgctatcggaccacccaccatttatgtcca 11659600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 19954414 - 19954352
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagta 317  Q
    |||||||| |||| ||||||   ||||||||||| |||||||||||||| |||||||||||||    
T  19954414 tgctatcaggttttcgctatctgaccacccaccatttatgtccacgaaccaagcccaatagta 19954352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 13574882 - 13574821
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||||||| |   ||||||||| |||||||||||||| ||||||||||||    
T  13574882 tgctatcaggtttccgctatcgtgtcacccaccatttatgtccacgaaccaagcccaatagt 13574821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 20327811 - 20327750
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| ||||||||||| |  |||||||||| ||||||||| |||| ||||||||||||    
T  20327811 tgctatcaggtttccgctatcgggccacccaccatttatgtccaggaaccaagcccaatagt 20327750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 204 - 317
Target Start/End: Complemental strand, 35038440 - 35038329
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    ||||| || ||||| |||||||| | ||| |||||||||| |||  | || ||| |||| ||||||||||| |  |||||||||| ||||||||||||||    
T  35038440 cacgacttctaagatggtatcagtgcctc-tccaagatccattgggccacctgcaatcaggtttccgctatcgg-ccacccaccatttatgtccacgaac 35038343  T
Q  304 taagcccaatagta 317  Q
     |||||||||||||    
T  35038342 caagcccaatagta 35038329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 45828095 - 45828185
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccac 299  Q
    |||| ||||| |||||||||| ||| |||||||||| |||  | || ||||| || ||||||||||| || |||||||||| ||||||||||    
T  45828095 atttctaagatggtatcagagcctc-tccaagatccattgcgccacctgctaccaggtttccgctatcgagccacccaccatttatgtccac 45828185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 33640121 - 33640211
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtcca 298  Q
    |||| ||||| | |||||||| ||||||||| |||| ||| || || || |||||  |||||| ||||| ||||||||||| |||||||||    
T  33640121 atttctaagatgatatcagagcctcctccaaaatccgttggaccacctgttatcatatttccgttattggaccacccaccatttatgtcca 33640211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 20303261 - 20303204
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaa 312  Q
    |||||||| ||||||||||| |  |||||||||| |||||||||||||| ||| ||||    
T  20303261 tgctatcaggtttccgctatcggtccacccaccatttatgtccacgaaccaagtccaa 20303204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 20303347 - 20303286
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| |||||| |||| |  |||||||||| |||||||||||||| ||| ||||||||    
T  20303347 tgctatcaggtttccactatcggtccacccaccatttatgtccacgaaccaagtccaatagt 20303286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 54567964 - 54568032
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgcta 273  Q
    |||||||| ||||| |||||||||| ||| |||||||||| |||| | || |||||||| ||||||||||    
T  54567964 cacgatttctaagatggtatcagagcctc-tccaagatccattgagccacctgctatcaggtttccgcta 54568032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 2029841 - 2029952
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| |||||||||| |||  | || |||||| | ||||||||||| | ||||||||||| ||||||||||||||    
T  2029841 cacgatttctaagatggtatcagagcctc-tccaagatccattgggccacctgctattaggtttccgctatcggaccacccaccatttatgtccacgaac 2029939  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  2029940 caagcccaatagt 2029952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 5711671 - 5711575
Alignment:
Q  220 gtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||| |||||||||||||| ||| || || |||||||| ||||||| ||| |  |||||||||| |||||||||||||| ||||||||||||    
T  5711671 gtatcagagcctcctccaagatccgttggaccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagt 5711575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 16419339 - 16419450
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| |||||||||| |||  | || |||||||| ||||||||||| || |||||||||| ||||||||||||||    
T  16419339 cacgatttctaagatggtatcagagcctc-tccaagatccattgggccacctgctatcaggtttccgctatcgagccacccaccatttatgtccacgaac 16419437  T
Q  304 taagcccaatagt 316  Q
     |||| |||||||    
T  16419438 caagctcaatagt 16419450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 14466418 - 14466311
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||| ||||| |||||||||| ||| |||||||||| |||  | ||||| ||||| ||||||||||| |  |||||||||| |||||||||||||| |||    
T  14466418 atttctaagatggtatcagagcctc-tccaagatccattgggccacttgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaag 14466320  T
Q  308 cccaatagt 316  Q
    |||||||||    
T  14466319 cccaatagt 14466311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 93366 - 93255
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||||||||| |||||||||| ||| |||||||||| |||  | || ||||||||  |||||| ||| |  |||||||||| |||||||||||||     
T  93366 cacgatttttaagatggtatcagagcctc-tccaagatccattgggccacctgctatcagctttccgttatcgggccacccaccaattatgtccacgaat 93268  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  93267 caagcccaatagt 93255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 15124795 - 15124684
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||||||| |||||||||| ||| || || |||||||| |||| || ||| |   || |||||| ||||||||||||||    
T  15124795 cacgatttctaagatggtatcagagtctc-tccaagatccattggaccacctgctatcaggttttcgttatcgggtcatccaccatttatgtccacgaac 15124697  T
Q  304 taagcccaatagt 316  Q
     ||| ||||||||    
T  15124696 caagtccaatagt 15124684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 16533399 - 16533495
Alignment:
Q  219 ggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||||| ||| || ||||||| |||  |||| |||||||| |||| |||||| |  |||||||||| |||||||||||||| ||| ||||||||    
T  16533399 ggtatcagagcctcttc-aagatccattgggctacctgctatcaggttttcgctatcgggccacccaccatttatgtccacgaaccaaggccaatagt 16533495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 17525296 - 17525235
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    |||||||| || |||||||| |  |||||||||| |||||||||||||| ||||||||||||    
T  17525296 tgctatcaggtatccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagt 17525235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 21383682 - 21383610
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattg 276  Q
    |||||||| ||||| |||||||||| |||||||||||||  |||  | || |||||||||||||| |||||||    
T  21383682 cacgatttctaagatggtatcagagcctcctccaagatctgttgggccacctgctatcaagtttctgctattg 21383610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 33606254 - 33606190
Alignment:
Q  252 acttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||||| |||||||||||    |||||||||| |||||||||||||| ||||| ||||||    
T  33606254 acttgctatcaggtttccgctatcaggccacccaccatttatgtccacgaaccaagcctaatagt 33606190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 38629913 - 38629952
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcc 243  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  38629913 cacgatttttaagatggtatcagagcctcctccaagatcc 38629952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 310
Target Start/End: Original strand, 24395935 - 24396040
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| || ||||||| ||| || || |||| ||| |||| | |||| | ||||||||||| ||||||||| ||||    
T  24395935 cacgatttctaagagggtatcagagcctcttc-aagatccattggaccacctgctctcatgttttcactatcggaccacccaccatttatgtccatgaac 24396033  T
Q  304 taagccc 310  Q
     ||||||    
T  24396034 caagccc 24396040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 34893506 - 34893595
Alignment:
Q  213 taagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    ||||| |||||||||| ||| |||||||||| |||  | || | |||||| |||| |||||| | ||||||||||| ||||||||||||||    
T  34893506 taagatggtatcagagcctc-tccaagatccattgggccacctactatcaggttttcgctatcggaccacccaccatttatgtccacgaac 34893595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 10523140 - 10523185
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacg 300  Q
    |||||||||||||||| ||| || |||||||||| |||||||||||    
T  10523140 tgctatcaagtttccgttatcgagccacccaccatttatgtccacg 10523185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 40149198 - 40149137
Alignment:
Q  255 tgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||  |||| ||||| | ||||||||| | |||||||||||||| ||||||||||||    
T  40149198 tgctatcagatttcagctatcggaccacccactatttatgtccacgaaccaagcccaatagt 40149137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 18607240 - 18607145
Alignment:
Q  220 gtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||| ||| |||||||||| |||  | || |||||||| ||||||| ||| |  | |||||||| ||||||| |||||| ||||||||||||    
T  18607240 gtatcagagcctc-tccaagatccattgggccacatgctatcaggtttccgttatcgggcaacccaccatttatgtctacgaaccaagcccaatagt 18607145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 193 - 306
Target Start/End: Complemental strand, 41230 - 41117
Alignment:
Q  193 attaggctcaac-acgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagtt 291  Q
    |||||||||||| ||||||| ||||| |||||||||| ||| |||||||| | |||  | || ||||||||||||| |||||| ||||||||||| | ||    
T  41230 attaggctcaactacgatttctaagatggtatcagagcctc-tccaagattcattgggccacctgctatcaagtttgcgctatcgaaccacccactattt 41132  T
Q  292 atgtccacgaactaa 306  Q
    ||| |||||||||||    
T  41131 atgcccacgaactaa 41117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 1992 - 2099
Alignment:
Q  208 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaactaag 307  Q
    |||| ||||| |||||||||| ||| |||||||||| |||  | || || ||||| ||||||||||| ||  ||||||||| |||||||||||||| |||    
T  1992 atttctaagatggtatcagagcctc-tccaagatccattgggccacctgttatcaggtttccgctatcgagtcacccaccatttatgtccacgaaccaag 2090  T
Q  308 cccaatagt 316  Q
    |||||||||    
T  2091 cccaatagt 2099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 81914 - 82024
Alignment:
Q  204 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattgaaccacccaccagttatgtccacgaac 303  Q
    |||||||| ||||| |||||||||| ||| |||||||||| ||| ||||| || ||||| |||||| | || || |||| ||||| ||||||||| ||||    
T  81914 cacgatttctaagatggtatcagagcctc-tccaagatccattggactacctgttatcaggtttccac-atcgagccacgcaccatttatgtccatgaac 82011  T
Q  304 taagcccaatagt 316  Q
     ||||||||||||    
T  82012 caagcccaatagt 82024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 13197 - 13281
Alignment:
Q  233 ctccaagatcctttgaactacttgctatcaagtttccgc-tattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
    ||||||||||| ||| || || |||||||| |||||||| |||||   ||||||| | ||||||||| |||| ||||||||||||    
T  13197 ctccaagatccattggaccacctgctatcaggtttccgcctattgggtcacccactatttatgtccatgaaccaagcccaatagt 13281  T

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Target: scaffold0366 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 10838 - 10922
Alignment:
Q  233 ctccaagatcctttgaactacttgctatcaagtttccgc-tattgaaccacccaccagttatgtccacgaactaagcccaatagt 316  Q
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T  10838 ctccaagatccattggaccacctgctatcaggtttccgcctattgggtcacccactatttatgtccatgaaccaagcccaatagt 10922  T

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