View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17229_high_4 (Length: 217)
Name: NF17229_high_4
Description: NF17229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17229_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 8458578 - 8458768
Alignment:
| Q |
9 |
agaagcaaaggatagaatctattgatgacaagtgatcccctcatgaaaggcaagtgcaaagcatatataaaagcatggtcatgtagtagagccaatgagc |
108 |
Q |
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| T |
8458578 |
agaaacaaaggatagaatctattgatgacaagtgatcccctcatgaaaggcaagtccaaagcatatataaaagcatgtgcatgtagtagggccaatgagc |
8458677 |
T |
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| Q |
109 |
aagttatcaaagcatacattattatattagcaacnnnnnnnnnnnntacattgttaattatgcgtattaaatcaatgaaccctcttgtggt |
199 |
Q |
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| T |
8458678 |
aagttatcaaagcacatattattatatttgcaacaaaaagaaagcatacattgttaattatgcgtattaaatcattaactcctcttgtggt |
8458768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 776764 - 776651
Alignment:
| Q |
15 |
aaaggatagaatctattgatgacaagtgatcccctcatgaaaggcaagtgcaaagcatatataaaagcatggtcatgtagtagagccaatgagcaagtta |
114 |
Q |
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| T |
776764 |
aaaggatagaatctattgatgacaagtgatcccctcatgaaaggcaagtccaaagcatatataaaagcatggtcatgtagtagagccaatgagcaagtta |
776665 |
T |
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| Q |
115 |
tcaaagcatacatt |
128 |
Q |
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| T |
776664 |
tcagagcatacatt |
776651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 817982 - 817869
Alignment:
| Q |
19 |
gatagaatctattgatgacaagtgatcccctcatgaaaggcaagtgcaaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcaa |
118 |
Q |
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| T |
817982 |
gatagaatctattgatgacaagtgatcacctcatgaaaggcaagtccaaagcatatataaaagcatggtcatgtagtagagccaatgagcaaattatcaa |
817883 |
T |
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| Q |
119 |
agcatacattatta |
132 |
Q |
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| T |
817882 |
agcatacattatta |
817869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 776596 - 776552
Alignment:
| Q |
155 |
tacattgttaattatgcgtattaaatcaatgaaccctcttgtggt |
199 |
Q |
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| T |
776596 |
tacattattaattatgcgtattaaatcaatgaaccctcttgtggt |
776552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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