View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17229_low_2 (Length: 480)

Name: NF17229_low_2
Description: NF17229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17229_low_2
NF17229_low_2
[»] chr6 (7 HSPs)
chr6 (334-396)||(24950150-24950212)
chr6 (315-372)||(17369690-17369747)
chr6 (315-396)||(20770652-20770733)
chr6 (125-216)||(24949986-24950077)
chr6 (328-372)||(6921350-6921394)
chr6 (328-372)||(6947880-6947924)
chr6 (332-396)||(14749399-14749463)
[»] chr7 (27 HSPs)
chr7 (315-396)||(660834-660915)
chr7 (326-396)||(29454101-29454171)
chr7 (315-391)||(24385208-24385284)
chr7 (315-393)||(14076683-14076761)
chr7 (315-393)||(14386711-14386789)
chr7 (318-396)||(19344565-19344643)
chr7 (315-396)||(29430988-29431069)
chr7 (315-389)||(19357919-19357993)
chr7 (326-396)||(29921991-29922061)
chr7 (315-372)||(6864794-6864851)
chr7 (316-413)||(29859439-29859536)
chr7 (315-392)||(29874517-29874594)
chr7 (309-372)||(18514768-18514831)
chr7 (329-392)||(19604464-19604527)
chr7 (315-366)||(20058044-20058095)
chr7 (337-392)||(20414888-20414943)
chr7 (329-396)||(29106816-29106883)
chr7 (328-374)||(15571895-15571941)
chr7 (330-396)||(19722020-19722086)
chr7 (326-396)||(21210479-21210549)
chr7 (330-396)||(22028630-22028696)
chr7 (315-381)||(29881273-29881339)
chr7 (330-396)||(29899376-29899442)
chr7 (317-362)||(24002235-24002280)
chr7 (317-362)||(24010419-24010464)
chr7 (331-396)||(24391416-24391481)
chr7 (315-392)||(29867242-29867319)
[»] chr4 (8 HSPs)
chr4 (319-396)||(53774842-53774919)
chr4 (326-392)||(3565750-3565816)
chr4 (326-396)||(837778-837848)
chr4 (326-372)||(3557752-3557798)
chr4 (326-372)||(3560956-3561002)
chr4 (315-396)||(11970969-11971050)
chr4 (333-396)||(35767020-35767083)
chr4 (316-392)||(53790559-53790635)
[»] chr2 (6 HSPs)
chr2 (317-396)||(18908798-18908877)
chr2 (317-396)||(18913546-18913625)
chr2 (317-396)||(18920754-18920833)
chr2 (315-395)||(14514903-14514983)
chr2 (327-396)||(25377076-25377145)
chr2 (346-396)||(10205462-10205512)
[»] chr3 (3 HSPs)
chr3 (316-392)||(3625740-3625816)
chr3 (324-396)||(25901275-25901347)
chr3 (324-396)||(25915293-25915365)
[»] chr1 (6 HSPs)
chr1 (329-395)||(4014966-4015032)
chr1 (328-396)||(4570929-4570997)
chr1 (326-392)||(39379059-39379125)
chr1 (315-396)||(4366482-4366563)
chr1 (329-396)||(21855384-21855451)
chr1 (318-396)||(10218987-10219065)
[»] chr5 (3 HSPs)
chr5 (315-396)||(28763892-28763973)
chr5 (329-396)||(24330900-24330967)
chr5 (330-409)||(29597554-29597633)
[»] chr8 (1 HSPs)
chr8 (316-366)||(27618523-27618573)
[»] scaffold0354 (1 HSPs)
scaffold0354 (316-372)||(7489-7545)


Alignment Details
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 24950150 - 24950212
Alignment:
Q  334 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  24950150 aattttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatataacaaa 24950212  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 17369747 - 17369690
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaa 372  Q
    |||||||| ||||||||||||||||||| |||||| ||||||| |||||||| |||||    
T  17369747 tttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaa 17369690  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 396
Target Start/End: Complemental strand, 20770733 - 20770652
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||| | |||||||||||||||||||||||| |||| ||||||||||  ||||| | | |||| | ||||||||||||    
T  20770733 tttgaagattatgataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaa 20770652  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 24949986 - 24950077
Alignment:
Q  125 gtcgaaaccatactttcaacataatgatcaaaatagaaccaattttttcctacagtaaatgcagtttgcaccaccatattagttctgcaatt 216  Q
    |||||||||| |||||||||||||| ||  ||||||| |||  |||||||||| |||  | || || ||||||||||||||||||| |||||    
T  24949986 gtcgaaaccaaactttcaacataattattgaaatagacccatctttttcctaccgtagttacatttggcaccaccatattagttctccaatt 24950077  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 6921350 - 6921394
Alignment:
Q  328 ataactaattttaaggaattgactccaagactcttcaacaccaaa 372  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||    
T  6921350 ataactaattttaaggaattgagtccaagattcttcaactccaaa 6921394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 6947880 - 6947924
Alignment:
Q  328 ataactaattttaaggaattgactccaagactcttcaacaccaaa 372  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||    
T  6947880 ataactaattttaaggaattgagtccaagattcttcaactccaaa 6947924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 14749463 - 14749399
Alignment:
Q  332 ctaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||| ||||||||| |||||||||||| ||| ||||| | ||||||| |||||| ||||||    
T  14749463 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaa 14749399  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 660834 - 660915
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||| | |||||||||||||||||||||||| |||||||||||||||| | ||| | | |||||| ||||||||||||    
T  660834 tttgaagattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaa 660915  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 29454101 - 29454171
Alignment:
Q  326 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||||||||||| ||||||| ||||||| |||||||| ||||| |||||||||  ||||||||||||    
T  29454101 tgataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaa 29454171  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 391
Target Start/End: Complemental strand, 24385284 - 24385208
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatata 391  Q
    |||||||| | |||| |||||||||||| ||| |||||||||||| |||||| ||||| ||| ||||||||||||||    
T  24385284 tttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 24385208  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 393
Target Start/End: Complemental strand, 14076761 - 14076683
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataac 393  Q
    |||||||| ||||||||||||||||||| |||||| ||||||| |||||||| ||||| | | |||| | |||||||||    
T  14076761 tttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataac 14076683  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 393
Target Start/End: Complemental strand, 14386789 - 14386711
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataac 393  Q
    |||||||| ||||||||||||||||||| |||||| ||||||| |||||||| ||||| | | |||| | |||||||||    
T  14386789 tttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataac 14386711  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 396
Target Start/End: Original strand, 19344565 - 19344643
Alignment:
Q  318 gaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    ||||| ||||| ||||||||||||| |||||| ||||||| | |||||| ||||| | |||||||| ||||||||||||    
T  19344565 gaagattctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaa 19344643  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 29430988 - 29431069
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    ||||||||  ||||||||||||||||||||||||  ||||||| |||| | | ||||| |||||||||  ||||||||||||    
T  29430988 tttgaagatcctgataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaa 29431069  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 19357993 - 19357919
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccata 389  Q
    ||||||||  |||| |||||||||| | ||||||| |||||||||||| ||| ||||| | ||||||||||||||    
T  19357993 tttgaagatcctgaaaactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccata 19357919  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 29921991 - 29922061
Alignment:
Q  326 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||||||| |||||||||||  |||||| |||||| | ||||| ||| |||||| ||||||||||||    
T  29921991 tgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaa 29922061  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 6864794 - 6864851
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaa 372  Q
    |||||||| | ||||||||| |||||||||| ||| |||||||||||||||| |||||    
T  6864794 tttgaagattatgataactagttttaaggaactgagtccaagactcttcaactccaaa 6864851  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 29859536 - 29859439
Alignment:
Q  316 ttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaactgatcttccttgtaac 413  Q
    ||||||| | ||||||||||||||||| ||| |  ||||||| |||||||| ||||| ||| |||||| ||||||||| || | |  |||||||||||    
T  29859536 ttgaagattgtgataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaatcaatttccttgtaac 29859439  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 392
Target Start/End: Complemental strand, 29874594 - 29874517
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 392  Q
    |||||||| | ||||||||||||||||| ||| || ||||||| |||||||| ||||| ||| |||| | ||||||||    
T  29874594 tttgaagattttgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataa 29874517  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 18514768 - 18514831
Alignment:
Q  309 aatttctttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaa 372  Q
    ||||| |||||||| ||  |||||||||||||||||||||| ||||||| | |||||| |||||    
T  18514768 aatttatttgaagattcatataactaattttaaggaattgagtccaagagttttcaactccaaa 18514831  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 392
Target Start/End: Original strand, 19604464 - 19604527
Alignment:
Q  329 taactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 392  Q
    ||||||||||||||||||||| |||| || |||||||| ||||| | | |||||| ||||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataa 19604527  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 20058044 - 20058095
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaac 366  Q
    |||||||| | | ||||||||||||||| ||||||| |||||||||||||||    
T  20058044 tttgaagattttcataactaattttaagaaattgacaccaagactcttcaac 20058095  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 392
Target Start/End: Complemental strand, 20414943 - 20414888
Alignment:
Q  337 tttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 392  Q
    ||||||||||||| |||||||||  ||| | ||||| |||||||||||||||||||    
T  20414943 tttaaggaattgagtccaagacttgtcatctccaaatttcatcatcttccatataa 20414888  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 396
Target Start/End: Complemental strand, 29106883 - 29106816
Alignment:
Q  329 taactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||||||||  | |||| |||||||||||||||| ||||| ||| |||||| ||||| ||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaa 29106816  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 374
Target Start/End: Original strand, 15571895 - 15571941
Alignment:
Q  328 ataactaattttaaggaattgactccaagactcttcaacaccaaact 374  Q
    ||||||||||||| ||||||||  ||||||||||||||| |||||||    
T  15571895 ataactaattttatggaattgaacccaagactcttcaactccaaact 15571941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 19722086 - 19722020
Alignment:
Q  330 aactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||| ||||| ||||||||| ||||||| |||| ||| ||||| | |||||||||||||| ||||||    
T  19722086 aactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaa 19722020  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 21210479 - 21210549
Alignment:
Q  326 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    ||||| |||| |||||||||| || |||||||||  ||| | ||||||||  |||||||||||||||||||    
T  21210479 tgatagctaaatttaaggaatagagtccaagacttgtcatctccaaactttgtcatcttccatataacaaa 21210549  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 22028696 - 22028630
Alignment:
Q  330 aactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    ||||||| ||||| |||||| |||||||||||||||| ||| | | | |||| ||||||||||||||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaa 22028630  T

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Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 29881339 - 29881273
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcat 381  Q
    |||||||| | || ||||||||| ||||||||||| ||||||| |||||||| ||||| ||| ||||    
T  29881339 tttgaagactatggtaactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcat 29881273  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 29899442 - 29899376
Alignment:
Q  330 aactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||||| |  |||||| |||| ||||||||||| ||||| ||| |||||| ||||||||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaa 29899376  T

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Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 24002280 - 24002235
Alignment:
Q  317 tgaagagtctgataactaattttaaggaattgactccaagactctt 362  Q
    |||||| ||||||||||||| ||||| |||||| ||||||||||||    
T  24002280 tgaagattctgataactaatcttaagtaattgagtccaagactctt 24002235  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 24010464 - 24010419
Alignment:
Q  317 tgaagagtctgataactaattttaaggaattgactccaagactctt 362  Q
    |||||| ||||||||||||| ||||| |||||| ||||||||||||    
T  24010464 tgaagattctgataactaatcttaagtaattgagtccaagactctt 24010419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 24391481 - 24391416
Alignment:
Q  331 actaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||| ||||| |||||||||||| | | |||||| ||||| ||| |||||||||||| ||||||    
T  24391481 actaatgttaagaaattgactccaacatttttcaactccaaagttcttcatcttccataaaacaaa 24391416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 392
Target Start/End: Complemental strand, 29867319 - 29867242
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 392  Q
    |||||||| | || ||||||||| ||||||||||| ||||||| |||||||| || || ||| |||| | ||||||||    
T  29867319 tttgaagattatggtaactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataa 29867242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 53774919 - 53774842
Alignment:
Q  319 aagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| ||||| | | |||| | ||||||||||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaa 53774842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 3565816 - 3565750
Alignment:
Q  326 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 392  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||| | | |||||| ||||||||    
T  3565816 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataa 3565750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 837848 - 837778
Alignment:
Q  326 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    ||||| ||||||||||  |||||| |||||||||||| ||||||||| ||| |||| | ||||||||||||    
T  837848 tgatagctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaa 837778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 3557798 - 3557752
Alignment:
Q  326 tgataactaattttaaggaattgactccaagactcttcaacaccaaa 372  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||||    
T  3557798 tgataactaattttaagaaattgagtccaagactcttcaaccccaaa 3557752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 3560956 - 3561002
Alignment:
Q  326 tgataactaattttaaggaattgactccaagactcttcaacaccaaa 372  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||||    
T  3560956 tgataactaattttaagaaattgagtccaagactcttcaaccccaaa 3561002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 11970969 - 11971050
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||| | |||||||||||| |||| |||||| ||||||||||||| || ||||| | | |||| | ||||||||||||    
T  11970969 tttgaagattatgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaa 11971050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 35767083 - 35767020
Alignment:
Q  333 taattttaaggaattgactccaagactcttcaacaccaaacttcat-catcttccatataacaaa 396  Q
    |||||||||||| |||| |||||||||||||||| ||||| ||| | ||||||||||||||||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaa-ttcttccatcttccatataacaaa 35767020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 53790635 - 53790559
Alignment:
Q  316 ttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 392  Q
    ||||||| ||||| ||||||||||||| |||||| ||||||| | |||||  ||||| ||  |||||||||||||||    
T  53790635 ttgaagattctgaaaactaattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatataa 53790559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 18908798 - 18908877
Alignment:
Q  317 tgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||| | ||| |||||||||| ||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||||    
T  18908798 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaa 18908877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 18913546 - 18913625
Alignment:
Q  317 tgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||| | ||| |||||||||| ||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||||    
T  18913546 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaa 18913625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 18920754 - 18920833
Alignment:
Q  317 tgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||| | ||| |||||||||| ||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||||    
T  18920754 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaa 18920833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 395
Target Start/End: Complemental strand, 14514983 - 14514903
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcat-catcttccatataacaa 395  Q
    |||||||| ||  |||||||||||||||||||||| ||||||| |||||||| ||||| ||||| ||| |||||||||||||    
T  14514983 tttgaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaa-ttcatccattttccatataacaa 14514903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 25377145 - 25377076
Alignment:
Q  327 gataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||||||||||  |||||| |||||||||||| ||| ||||| | | ||||| |||||||||||||    
T  25377145 gataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaa 25377076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 10205462 - 10205512
Alignment:
Q  346 ttgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||| |||||||||||||||||||| |||   |||||||||||||||||||    
T  10205462 ttgagtccaagactcttcaacaccatactcagtcatcttccatataacaaa 10205512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 3625816 - 3625740
Alignment:
Q  316 ttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 392  Q
    ||||||| | ||||||||||||||||| |||||| |||||||||||||||| ||||| ||| |||| | ||||||||    
T  3625816 ttgaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataa 3625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 25901275 - 25901347
Alignment:
Q  324 tctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||||||||||| |  |||||| |||||||||||| ||| | ||| | | |||| ||||||||||||||    
T  25901275 tctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaa 25901347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 25915293 - 25915365
Alignment:
Q  324 tctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||||||||||| |  |||||| |||||||||||| ||| | ||| | | |||| ||||||||||||||    
T  25915293 tctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaa 25915365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 395
Target Start/End: Original strand, 4014966 - 4015032
Alignment:
Q  329 taactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaa 395  Q
    ||||||| ||||||||||||| ||||||| |||||||| ||||| ||| |||||| |||||||||||    
T  4014966 taactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaa 4015032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 4570997 - 4570929
Alignment:
Q  328 ataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    ||||||||||||||| |||||| ||||||| |||||||| ||||| ||| |||| | ||||||||||||    
T  4570997 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 4570929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 39379059 - 39379125
Alignment:
Q  326 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 392  Q
    |||||||| |||||||| |||||| |||||||||||||||| ||||| | | |||||| ||||||||    
T  39379059 tgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataa 39379125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 4366482 - 4366563
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    |||||||| |||| ||||||| |||||| ||| || |||||||||||||||| || || ||| |||||| ||||| ||||||    
T  4366482 tttgaagattctggtaactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccataaaacaaa 4366563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 21855384 - 21855451
Alignment:
Q  329 taactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    ||||||| |||||||| |||| ||||||| |||||||| ||||| | | |||||| ||||||||||||    
T  21855384 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaa 21855451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 396
Target Start/End: Complemental strand, 10219065 - 10218987
Alignment:
Q  318 gaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    ||||||| || |||||||||||||| |||||| ||||||| |||||||  ||||| ||| |||| | ||||| ||||||    
T  10219065 gaagagtatggtaactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaa 10218987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 28763892 - 28763973
Alignment:
Q  315 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    ||||||||  |||||| || ||||| |||||| |||||||||||| |||||| ||||| | | |||||||||||||||||||    
T  28763892 tttgaagatcctgatagctgattttgaggaatcgactccaagacttttcaactccaaattgcgtcatcttccatataacaaa 28763973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 24330900 - 24330967
Alignment:
Q  329 taactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 396  Q
    ||||||| |||||||| |||| ||||||| |||||||| ||||| | | |||||| ||||||||||||    
T  24330900 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaa 24330967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 29597554 - 29597633
Alignment:
Q  330 aactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaactgatcttccttg 409  Q
    |||||||||||||||||||| ||||||| | |||||| ||||| |  ||||| | |||||||||||| |||  |||||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttg 29597633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 27618573 - 27618523
Alignment:
Q  316 ttgaagagtctgataactaattttaaggaattgactccaagactcttcaac 366  Q
    ||||||| |||||||||||| |||||| || ||| ||||||||||||||||    
T  27618573 ttgaagattctgataactaactttaagcaactgagtccaagactcttcaac 27618523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 7545 - 7489
Alignment:
Q  316 ttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaa 372  Q
    ||||||| || |||| ||||||||||||||||||  ||||||||| ||||| |||||    
T  7545 ttgaagattccgatagctaattttaaggaattgaacccaagactcatcaactccaaa 7489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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