View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17229_low_3 (Length: 402)
Name: NF17229_low_3
Description: NF17229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17229_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 71 - 277
Target Start/End: Original strand, 19768748 - 19768954
Alignment:
| Q |
71 |
agccattatcgttgtgggacctatccgtcaatgaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttgagaagctga |
170 |
Q |
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| T |
19768748 |
agccattatcgttgtggaacctatccgtcaatgaatttgaggcaggg-agaggaaccttaaatcatgtgcaaactgagaaggagaaatttgagaagctga |
19768846 |
T |
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| Q |
171 |
ttttgtttg-agcttgaatctgacagagaaaggttcttatgggtaaattttcttcttccacttttatttgnnnnnnnctcatctattttgctatagaaga |
269 |
Q |
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| T |
19768847 |
ttttttttttagcttgaatctgacggagaaaggttcttatgggtaaattttcttcttccacttttatttgtttctttctcatctattttgctatagaaga |
19768946 |
T |
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| Q |
270 |
aactataa |
277 |
Q |
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|||||||| |
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| T |
19768947 |
aactataa |
19768954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 127 - 347
Target Start/End: Original strand, 29199150 - 29199369
Alignment:
| Q |
127 |
cttaaatcatgtgcaaaatgagaaggagaaatttgagaagctgattttgtttgagcttgaatctgacagagaaaggttcttatgggtaaattttcttctt |
226 |
Q |
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| T |
29199150 |
cttaaatcatgtgcaaaatgagaaggagaaatttgagaagctgattttgtttgaatttgaatctgacggagaaaggttcttatggataaagtttcttctt |
29199249 |
T |
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| Q |
227 |
ccacttttatttgnnnnnnnctcatctattttgctatagaagaaactataagagttggatcttcatgttctcttattcatannnnnnnctcttatgattt |
326 |
Q |
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| T |
29199250 |
ccacttttatttgtttctttctcatctattttgctatagaagaaactagaacagttggatcgtcatgttctcttattcata-ttttttctctttagattt |
29199348 |
T |
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| Q |
327 |
atctatattgaaattgttcac |
347 |
Q |
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| T |
29199349 |
atctatattgaaattgttcac |
29199369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 220 - 347
Target Start/End: Complemental strand, 25901225 - 25901099
Alignment:
| Q |
220 |
tcttcttccacttttatttgnnnnnnnctcatctattttgctatagaagaaactataagagttggatcttcatgttctcttattcatannnnnnnctctt |
319 |
Q |
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| T |
25901225 |
tcttcttccacttttatttgtttctttctcatctattttgccatagaagaaactagaatagatgggtcttcatgttctcttattcata-ctttttctctt |
25901127 |
T |
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| Q |
320 |
atgatttatctatattgaaattgttcac |
347 |
Q |
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| T |
25901126 |
gagatttatctacattgaaattgttcac |
25901099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 5478209 - 5478268
Alignment:
| Q |
103 |
gaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttga |
162 |
Q |
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| T |
5478209 |
gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga |
5478268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 50227416 - 50227378
Alignment:
| Q |
201 |
ggttcttatgggtaaattttcttcttccacttttatttg |
239 |
Q |
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| T |
50227416 |
ggttcttatgggtaaagtttcttctttcacttttatttg |
50227378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 2685103 - 2685044
Alignment:
| Q |
103 |
gaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttga |
162 |
Q |
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| T |
2685103 |
gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga |
2685044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 6174412 - 6174364
Alignment:
| Q |
343 |
ttcacttttctcacctttcaacagagacaaaagtttttcggtgatgatg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
6174412 |
ttcacttttctcacctttcaacagagacaaaagttttccagtgatgatg |
6174364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 45008528 - 45008469
Alignment:
| Q |
103 |
gaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttga |
162 |
Q |
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| T |
45008528 |
gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga |
45008469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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