View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17229_low_4 (Length: 349)
Name: NF17229_low_4
Description: NF17229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17229_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 366173 - 366294
Alignment:
| Q |
214 |
acaaacagtaattttcttcatcaacagtgtatttttctttctttgataagccaaatttcttcctctacagttttaatatcaacattctttggtatgagat |
313 |
Q |
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| T |
366173 |
acaaacagtaattttcttcatcaacagtgtatttttctttctttgataagccaaatttcttcctctacagttttaatatcaacattctttggtatgagat |
366272 |
T |
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| Q |
314 |
aaaccaaaattagtatctatac |
335 |
Q |
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| T |
366273 |
aaaccaaaattagtatctatac |
366294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 214 - 329
Target Start/End: Complemental strand, 4026166 - 4026048
Alignment:
| Q |
214 |
acaaacagtaattttcttcat---caacagtgtatttttctttctttgataagccaaatttcttcctctacagttttaatatcaacattctttggtatga |
310 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| | |
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| T |
4026166 |
acaaacagtaattttcttcattaacaacagtatatttttctttctttgataagacaaatttcttcctctacagtatatatatcaacattctttggtatta |
4026067 |
T |
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| Q |
311 |
gataaaccaaaattagtat |
329 |
Q |
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| T |
4026066 |
cataaaccaaaattagtat |
4026048 |
T |
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