View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17230_high_5 (Length: 332)
Name: NF17230_high_5
Description: NF17230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17230_high_5 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 61 - 329
Target Start/End: Original strand, 18152090 - 18152358
Alignment:
| Q |
61 |
tttgggggtattcaatacacccatgaattctgagcttcatgttactcatcccaagagacatgccagatagaggacattccaatttaattgaatggaatga |
160 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18152090 |
tttgggagtattcaatacacccatgaattctgagcttcatgttactcatcccaagagacatgccagatagaggacattccaatttaattgaatggaatga |
18152189 |
T |
|
| Q |
161 |
cagtttctcatttgaaatctgtacaataaaaatttttatcaaatcacacatcgcagtatactagaccttctaattctttaagaggtttatctaaaaggct |
260 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18152190 |
cagtttctcatttgaaatctgtacaataagaatttttatcaaatcacacatcgcagtatactagaccttctaattctttaagaggtttatctaaaaggct |
18152289 |
T |
|
| Q |
261 |
cgcaatataactaggaagacgtttcaaataccacacatgggttactggacatgctagtattatctaccc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
18152290 |
cgcaatataactaggaagacgtttcaaataccatacatgggttactggacatgctagttttatataccc |
18152358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 1786454 - 1786396
Alignment:
| Q |
256 |
aggctcgcaatataactaggaagacgtttcaaataccacacatgggttactggacatgc |
314 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
1786454 |
aggctcgtaatataactaggaagacgttacaaatgccacacatgggttactagacatgc |
1786396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 61 - 329
Target Start/End: Complemental strand, 28372297 - 28372029
Alignment:
| Q |
61 |
tttgggggtattcaatacacccatgaattctgagcttcatgttactcatcccaagagacatgccagatagaggacattccaatttaattgaatggaatga |
160 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28372297 |
tttgggagtattcaatacacccatgaattctgagcttcatgttactcatcccaagagacatgccagatagaggacattccaatttaattgaatggaatga |
28372198 |
T |
|
| Q |
161 |
cagtttctcatttgaaatctgtacaataaaaatttttatcaaatcacacatcgcagtatactagaccttctaattctttaagaggtttatctaaaaggct |
260 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28372197 |
cagtttctcatttgaaatctgtacaataagaatttttatcaaatcacacatcgcagtatactagaccttctaattctttaagaggtttatctaaaaggct |
28372098 |
T |
|
| Q |
261 |
cgcaatataactaggaagacgtttcaaataccacacatgggttactggacatgctagtattatctaccc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
28372097 |
cgcaatataactaggaagacgtttcaaataccatacatgggttactggacatgctagttttatataccc |
28372029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 61 - 329
Target Start/End: Complemental strand, 28380119 - 28379851
Alignment:
| Q |
61 |
tttgggggtattcaatacacccatgaattctgagcttcatgttactcatcccaagagacatgccagatagaggacattccaatttaattgaatggaatga |
160 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28380119 |
tttgggagtattcaatacacccatgaattctgagcttcatgttactcatcccaagagacatgccagatagaggacattccaatttaattgaatggaatga |
28380020 |
T |
|
| Q |
161 |
cagtttctcatttgaaatctgtacaataaaaatttttatcaaatcacacatcgcagtatactagaccttctaattctttaagaggtttatctaaaaggct |
260 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28380019 |
cagtttctcatttgaaatctgtacaataagaatttttatcaaatcacacatcgcagtatactagaccttctaattctttaagaggtttatctaaaaggct |
28379920 |
T |
|
| Q |
261 |
cgcaatataactaggaagacgtttcaaataccacacatgggttactggacatgctagtattatctaccc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
28379919 |
cgcaatataactaggaagacgtttcaaataccatacatgggttactggacatgctagttttatataccc |
28379851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37704455 - 37704523
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggt |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704455 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggt |
37704523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37698637 - 37698697
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgtt |
61 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
37698637 |
ccaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgtt |
37698697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37698974 - 37699044
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggt |
69 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggt |
37699044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37437521 - 37437578
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttatttt |
58 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||| ||||||||| |||| |
|
|
| T |
37437521 |
ccaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgtttt |
37437578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 3578290 - 3578173
Alignment:
| Q |
197 |
tatcaaatcacacatcgcagtatactagaccttctaattctttaagaggtttatctaaaaggctcgcaatataactaggaagacgtttcaaataccacac |
296 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |||| |||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3578290 |
tatcaaatcacaca---cagtatactataccttcaaattttttaagagctttatctatctgactcacaatataactaggaagacgtttcaaataccacac |
3578194 |
T |
|
| Q |
297 |
atgggttactggacatgctag |
317 |
Q |
| |
|
|||| ||||| |||||||||| |
|
|
| T |
3578193 |
atggattactagacatgctag |
3578173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 223452 - 223376
Alignment:
| Q |
238 |
ttaagaggtttatctaaaaggctcgcaatataactaggaagacgtttcaaataccacacatgggttactggacatgc |
314 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| || || |||||||| |
|
|
| T |
223452 |
ttaagaggtttatctaaaagattcgcgatataactaggaagacctttcaaataccacacatgagtcacgggacatgc |
223376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University