View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17230_low_1 (Length: 340)
Name: NF17230_low_1
Description: NF17230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17230_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 16528594 - 16528306
Alignment:
| Q |
18 |
aattgttccatccacacatgtgccatggaaagtaacctgctcctgatcgacaacaaaaaggagaagtattagaaacacatactaactctaacaattccaa |
117 |
Q |
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| T |
16528594 |
aattgttccatccacacatgtgccatggaaagtaacctgctcctgatcgacaacaaaaaggagaagtattagaaacacataccaattctaacaattccaa |
16528495 |
T |
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| Q |
118 |
aactttttgtagtgttggcaaa-aaaattataataggttcctaaaannnnnnnnnnnnnnnaacttgtacaaaatatacaannnnnnnaacataagcata |
216 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||| |||||||||||| |
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| T |
16528494 |
aactttttgtagtgttggcaaaaaaaactataataggttccttaaa--tataattttttttaacttgtacaaaatatacaattcttttaacataagcata |
16528397 |
T |
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| Q |
217 |
aaaatagtttataatatgtaagactgttcattcttcaaaatgtaatacattttattaacctcaaatgagtgtaaacaattaaaaccactct |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16528396 |
aaaatagtttataatatgtaagactgttcattcttcaaaatgtaatacattttattaacctcaaatgagtgtaaacaattaaaaccactct |
16528306 |
T |
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