View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17231_high_4 (Length: 365)
Name: NF17231_high_4
Description: NF17231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17231_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 351
Target Start/End: Complemental strand, 40748026 - 40747698
Alignment:
| Q |
20 |
caagtcctcaaaggtagccatatgctttatttatgcaagaatctattgcttgtgctgaggttccccaactgcacatcagcataccca-----acatgtgt |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
40748026 |
caagtcctcaaatgtagccatatgctttatttatgcaagaatctattgcttgtgctgaggttccccaaccgcacatcagcatacccattccaacatgtgt |
40747927 |
T |
|
| Q |
115 |
acccctgatttggattccctgcttttcatgtgggaaaggtaggtacctacctttcagtcaatgttgttcatcgaatgatcaataattagtgttccaaatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
40747926 |
acccctgatttggattccctgcttttcatgtgggaaaggtac---cctacctttcagtcaattttgttcatcgaatgatcaat---tagtgttccaaatt |
40747833 |
T |
|
| Q |
215 |
aagcatatgtccaactctttattttcagaaagaaaagttaaaacaaatgaacatgatatctaaaatttggctctttatcaannnnnnnnnacaaaacaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40747832 |
aagcatatgtccaactctttattttcagaaagaaaagttaaaacaaatgaacatgatatctaaaatttggctctttatca--ttttttttacaaaacaaa |
40747735 |
T |
|
| Q |
315 |
atgtaatagagcattaaactttttaaatctacctctt |
351 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40747734 |
atgtaacagagcattaaactttttaaatctacctctt |
40747698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University