View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17231_high_8 (Length: 285)
Name: NF17231_high_8
Description: NF17231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17231_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 27874916 - 27874649
Alignment:
| Q |
1 |
cccttcaaaattatcctatgcttaaaccaactaaatttatctatcattcaatttacaaaattgtaaagnnnnnnnnnttatattaaaaatgtaggtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27874916 |
cccttcaaaattatcctatgcttaaaccaactaaatttatctatcattcaatttacaaaattgtaaagaaaaaaaaattatattaaaaatgtaggtaaat |
27874817 |
T |
|
| Q |
101 |
aaataattaccaattatccttaaaccacttattaaattgaaatattaagatcaatcctaggttttttcatagttggaatgggtaccatagagttacacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27874816 |
aaataattaccaattatccttaaaccacttattaaattgaaatattaagatcaatcctaggttttttcatagttggaatgggtacaatagagttacacct |
27874717 |
T |
|
| Q |
201 |
aggacacttaggattattcttcataatcaatacataagataaacaaccaggacaccctgcagccattg |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27874716 |
aggacacttaggattattcttcataatcaatacataagataagcaaccaggacaccctgcagccattg |
27874649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University