View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17231_low_1 (Length: 721)
Name: NF17231_low_1
Description: NF17231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17231_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 348 - 705
Target Start/End: Complemental strand, 40113809 - 40113452
Alignment:
| Q |
348 |
ggaaagggtggcgtctgcaccaacttgatgttaacaatgcgttccttcaaggattactcaaagaagatgtttacatgagtcaacctccgggactaaaaga |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40113809 |
ggaaagggtggcgtctgcaccaacttgatgttaacaatgcgttccttcaaggattactcaaagaagatgtttacatgagtcaacctccaggactaaaaga |
40113710 |
T |
|
| Q |
448 |
taaacagtatccgaatcatgtttgcaagcttcataaagctatctatggtcttcggcaagcacctcgtgcatggcatgatgctctaaaagcctttatcaca |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113709 |
taaacagtatccgaatcatgtttgcaagcttcataaagctatctatggtcttcggcaagcacctcgtgcatggcatgatgctctaaaagcctttatcaca |
40113610 |
T |
|
| Q |
548 |
tctcatggctttactacaagcaaaagtgaccgctctttgttcatatatgcttctggtgctatcattgcctacttcttggtatatgttgatgatttgctgt |
647 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113609 |
tctcatggctttactacaagcaaaagtgacccctctttgttcatatatgcttctggtgctatcattgcctacttcttggtatatgttgatgatttgctgt |
40113510 |
T |
|
| Q |
648 |
taacaggtaatgatgcagaattcctacacaacttcattcaatctttatctaaaacttt |
705 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113509 |
taacaggtaatgatgcagaattcctacacaacttcattcaatctttatctaaaacttt |
40113452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 351
Target Start/End: Original strand, 29079817 - 29080161
Alignment:
| Q |
7 |
ttgcccatgactaatttgtgggatcaatattggctcttatgaaataagctgaatgaaaattgccaaggtgtactaaccaaagagaagaataatactacta |
106 |
Q |
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| T |
29079817 |
ttgcccatgactaatttgtgggatcaatattggctcttatgaaataagctgaatgaaaattgccaaggtgtactaaccaaagagaagaataatactacta |
29079916 |
T |
|
| Q |
107 |
atgcactgtgagtttgagggaatatattagataaaatgtaataactaataagccttttgttataatcaggctaagggactaagactagtttaatattttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29079917 |
atgcactgtgagtttgagggaatatattagataaaatctaataactaataagccttttgttataatcaggctaagggactaagactagtttaatattttt |
29080016 |
T |
|
| Q |
207 |
atctttcaccatagaacatttaaagtcgttatagtaactgaaggcggagttggaggatttgagattgttgggaagaaggtttacgtggtatcatctgaat |
306 |
Q |
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| T |
29080017 |
atcttttactatagaacatttaaagtcgttataataactgaaggtggagttggaggatttgagattgttgggaagaaggtttacgtggtatcatctgaat |
29080116 |
T |
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| Q |
307 |
ggagtttcgatgagtaggatcgatagggttttaatttcggaggaa |
351 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29080117 |
ggagtttcgatgagtaggatcaatagggttttaatttcggaggaa |
29080161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 479 - 705
Target Start/End: Original strand, 6406555 - 6406781
Alignment:
| Q |
479 |
cataaagctatctatggtcttcggcaagcacctcgtgcatggcatgatgctctaaaagcctttatcacatctcatggctttactacaagcaaaagtgacc |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6406555 |
cataaagctatctatggtcttcggcaagcacctcgtgcatggcatgatgctctaaaagcctttatcacatctcatggctttactacaagcaaaagtgacc |
6406654 |
T |
|
| Q |
579 |
gctctttgttcatatatgcttctggtgctatcattgcctacttcttggtatatgttgatgatttgctgttaacaggtaatgatgcagaattcctacacaa |
678 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6406655 |
cctctttgttcatatatgcttctggtgctatcattgcctacttcttggtatatgttgatgatttgctgttaacaggtaatgatgcagaattcctacacaa |
6406754 |
T |
|
| Q |
679 |
cttcattcaatctttatctaaaacttt |
705 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
6406755 |
cttcattcaatctttatctaaaacttt |
6406781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 392 - 687
Target Start/End: Complemental strand, 654891 - 654596
Alignment:
| Q |
392 |
cttcaaggattactcaaagaagatgtttacatgagtcaacctccgggactaaaagataaacagtatccgaatcatgtttgcaagcttcataaagctatct |
491 |
Q |
| |
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||||||| || |||||| ||||| |||||||||| ||| ||||| ||||| | ||||||||| ||||| |||||||| ||||| ||||| ||| | || | |
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| T |
654891 |
cttcaagcatcactcaaggaagaagtttacatgactcagcctccaggactcagagataaacaatatccaaatcatgtgtgcaaacttcacaaatcaattt |
654792 |
T |
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| Q |
492 |
atggtcttcggcaagcacctcgtgcatggcatgatgctctaaaagcctttatcacatctcatggctttactacaagcaaaagtgaccgctctttgttcat |
591 |
Q |
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|||||||| | |||||||||||||||||||||||| ||| ||||| || |||||||| | ||| || ||||| ||||| ||||||| ||| |||| || |
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| T |
654791 |
atggtcttagataagcacctcgtgcatggcatgatggtctcaaagctttcatcacatcccctggtttcactaccagcaagagtgacctctccctgtttat |
654692 |
T |
|
| Q |
592 |
atatgcttctggtgctatcattgcctacttcttggtatatgttgatgatttgctgttaacaggtaatgatgcagaattcctacacaacttcattca |
687 |
Q |
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|||| | || ||| | |||||||||||||||||||| |||||||||||| | || |||||||||||||||| ||||| |||||||||| ||||| |
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| T |
654691 |
atatacctcaggtccaatcattgcctacttcttggtctatgttgatgatcttttgctaacaggtaatgatgcccaattcttacacaactttattca |
654596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 465 - 664
Target Start/End: Original strand, 3018952 - 3019151
Alignment:
| Q |
465 |
atgtttgcaagcttcataaagctatctatggtcttcggcaagcacctcgtgcatggcatgatgctctaaaagcctttatcacatctcatggctttactac |
564 |
Q |
| |
|
|||||||||| || || |||||||| ||||| || ||||||||||| | || ||||||||||| || ||| |||| || || ||||||||||| ||||| |
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| T |
3018952 |
atgtttgcaaactacacaaagctatatatggcctaaggcaagcacctagagcttggcatgatgcactcaaaaccttcattacctctcatggcttcactac |
3019051 |
T |
|
| Q |
565 |
aagcaaaagtgaccgctctttgttcatatatgcttctggtgctatcattgcctacttcttggtatatgttgatgatttgctgttaacaggtaatgatgca |
664 |
Q |
| |
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|||| ||||||| | || | ||||||||||| || ||| ||| |||| ||||| ||||| |||||||||||| | || ||||| || ||||||||| |
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| T |
3019052 |
aagccaaagtgatccttcgctcttcatatatgcctcaggtactactcttgcatactttttggtttatgttgatgatcttcttttaacgggaaatgatgca |
3019151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 366 - 431
Target Start/End: Original strand, 45190030 - 45190095
Alignment:
| Q |
366 |
accaacttgatgttaacaatgcgttccttcaaggattactcaaagaagatgtttacatgagtcaac |
431 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |||| |||| | |||||||||||||||| |
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| T |
45190030 |
accaacttgatgttaacaatgctttccttcaaggatctctcacagaacaagtttacatgagtcaac |
45190095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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