View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17231_low_11 (Length: 254)
Name: NF17231_low_11
Description: NF17231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17231_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 75 - 254
Target Start/End: Original strand, 39282790 - 39282969
Alignment:
| Q |
75 |
ctaattacacctaccactcctagtaatacctacctacccctccttgtttgctatatttaacgctttcttgtcttttgtgttcaaatcctttcgtaaaata |
174 |
Q |
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| T |
39282790 |
ctaattacacctaccactcctagtaatacctacctacccctccttgtttgctatatttaacgctttcttgtcttttgtgttcaaatcctttcgtaaaata |
39282889 |
T |
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| Q |
175 |
tagcaatgctctaacttaaaacagagaaccactgcaacgggtctaaaataacatagttttccaaagtgagattttatttt |
254 |
Q |
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| T |
39282890 |
tagcaatgctctaacttaaaacagagaaccactgcaacgggtctaaaataacatagttttccaaagtgagattttatttt |
39282969 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 39281542 - 39281593
Alignment:
| Q |
24 |
ttcgagtgttgtcaatcacaccactccatgtacttctaataaacaatgttgcta |
77 |
Q |
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| T |
39281542 |
ttcgagtgttgtcaatcac--cactccatgcacttataataaacaatgttgcta |
39281593 |
T |
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