View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17231_low_13 (Length: 228)
Name: NF17231_low_13
Description: NF17231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17231_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 42352797 - 42352900
Alignment:
| Q |
17 |
cctgtgaaggaattaagaggtggtgtcaaatttgctcctattggtttgataaatttgggagggggtgtcaatatcaaagagttcgattgctcgcttctga |
116 |
Q |
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| T |
42352797 |
cctgtgaaggaattaagaggtggagtcaaatttgctcctattggtttgataaattcgagagggggtgtcaatatcaaagagttcggttgctcgcttctga |
42352896 |
T |
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| Q |
117 |
aacc |
120 |
Q |
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|||| |
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| T |
42352897 |
aacc |
42352900 |
T |
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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 42353719 - 42353767
Alignment:
| Q |
114 |
tgaaaccctaaccttgctcattctgaaatcaactttcaaatgtaagtat |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42353719 |
tgaaaccctaaccttgctcattctgaaatcaactttcaaatgtaagtat |
42353767 |
T |
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