View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17231_low_2 (Length: 619)
Name: NF17231_low_2
Description: NF17231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17231_low_2 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0257 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 23519 - 23899
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23519 |
aggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
23618 |
T |
|
| Q |
117 |
aataccaaaattaattaaattcatgggaaaataattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagt |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23619 |
aataccaaaattaattaaattcataggaaaataattaggagtggttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagt |
23718 |
T |
|
| Q |
217 |
gcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaa |
316 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23719 |
gcatgagtaaatctacttaaaattgggtcaatatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaa |
23818 |
T |
|
| Q |
317 |
atagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23819 |
atagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
23899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 19996716 - 19996336
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19996716 |
aggacaagctagtttgacacaaaagttcctattatacctttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
19996617 |
T |
|
| Q |
117 |
aataccaaaattaattaaattcatgggaaaataattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagt |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19996616 |
aataccaaaattaattaaattcataggaaaataattaggagtggttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagt |
19996517 |
T |
|
| Q |
217 |
gcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaa |
316 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19996516 |
gcatgagtaaatctacttaaaattgggtcaatatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaa |
19996417 |
T |
|
| Q |
317 |
atagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19996416 |
atagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
19996336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 15305214 - 15304837
Alignment:
| Q |
19 |
gacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaataccaa |
118 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15305214 |
gacaagcaagtttgacacaaaagttcctattatacccttgtctttgatttcatccattttacatttatttaccccatctcataattactcccaataccaa |
15305115 |
T |
|
| Q |
119 |
taccaaaattaattaaattcatgggaaaataattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15305114 |
taccaaaattaattaaattcatgggaaaataatttggagtagttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagtgc |
15305015 |
T |
|
| Q |
219 |
atgaataaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaat |
318 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
15305014 |
atgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagataagggtaaaat |
15304915 |
T |
|
| Q |
319 |
agacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtatttt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15304914 |
agacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtatttt |
15304837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 31485620 - 31485658
Alignment:
| Q |
97 |
tcataattactcccaataccaataccaaaattaattaaa |
135 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
31485620 |
tcataattacttcgaataccaataccaaaattaattaaa |
31485658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 148 - 397
Target Start/End: Complemental strand, 45278275 - 45278026
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45278275 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa |
45278176 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45278175 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
45278076 |
T |
|
| Q |
348 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45278075 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
45278026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 148 - 397
Target Start/End: Complemental strand, 41306025 - 41305776
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41306025 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttaggagagtgcatgagtaaatctacttaaaattgggtcaa |
41305926 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41305925 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatatatccttaaactatgaaat |
41305826 |
T |
|
| Q |
348 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41305825 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
41305776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 148 - 365
Target Start/End: Original strand, 10647072 - 10647289
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10647072 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttaggagagtgcatgagtaaatctacttaaaattgggtcaa |
10647171 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10647172 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
10647271 |
T |
|
| Q |
348 |
ggacatgtattttgaaac |
365 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10647272 |
ggacatgtattttgaaac |
10647289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 10646644 - 10646764
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10646644 |
aggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
10646743 |
T |
|
| Q |
117 |
aataccaaaattaattaaatt |
137 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10646744 |
aataccaaaattaattaaatt |
10646764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 8697899 - 8697777
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8697899 |
aggacaaactagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
8697800 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8697799 |
aataccaaaattaattaaattca |
8697777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 40486454 - 40486332
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40486454 |
aggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
40486355 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
40486354 |
aataccaaaattaattaaattca |
40486332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 41307962 - 41307840
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41307962 |
aggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
41307863 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
41307862 |
aatatcaaaattaattaaattca |
41307840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 45278702 - 45278580
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45278702 |
aggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
45278603 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
45278602 |
aataccaaaattaattaaattca |
45278580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 148 - 397
Target Start/End: Complemental strand, 44277038 - 44276789
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44277038 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa |
44276939 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44276938 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
44276839 |
T |
|
| Q |
348 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44276838 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
44276789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 148 - 397
Target Start/End: Original strand, 19911952 - 19912201
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19911952 |
taattaggagtagttaattacgatggattagagtgcagtagtcatgggaaaataatttcttggaagagtgcatgagtaaatctacttaaaattgggtcaa |
19912051 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19912052 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
19912151 |
T |
|
| Q |
348 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19912152 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
19912201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 148 - 397
Target Start/End: Original strand, 12095201 - 12095450
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
12095201 |
taattagaagtagttagttacgatagattagagtggagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcta |
12095300 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
12095301 |
catttattagtggaaaataattattgtgaagaaaatctagaatccaattaattggtagacaagggtaaaatagataaaatgcatccttaaactatgaaat |
12095400 |
T |
|
| Q |
348 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12095401 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatatattttg |
12095450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 207 - 397
Target Start/End: Original strand, 38806178 - 38806368
Alignment:
| Q |
207 |
ttgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtaga |
306 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
38806178 |
ttgggagagtgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattatggagaaaatctagaatccaattaattggtaga |
38806277 |
T |
|
| Q |
307 |
caagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38806278 |
caagggtaaaatagacaaaatgtatccttaaactatgaaatagacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
38806368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 406 - 579
Target Start/End: Complemental strand, 40662017 - 40661843
Alignment:
| Q |
406 |
tatgaattaactcctaactagttggaccaaccttcattggcgagtttgcttcgactttgagaaagaaaggaaaat--atattaaagatttgattcctatg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40662017 |
tatgaattaactcctaactagttggaccaaccttcattggcgaggttgcctcgactttgagaaagaaaggaaaatatatattaaagatttgattcctatg |
40661918 |
T |
|
| Q |
504 |
taannnnnnngtatagcttgtttagttttattttggggaaaatacactaacctcccctaaggtttatctaaatgta |
579 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40661917 |
taa-ctttttgtatagcttgtttagttttattttggggaaaatacactaaactcccctaaggtttatctaaatgta |
40661843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 12094634 - 12094756
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12094634 |
aggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctctattttacatttatttaccccatctcataattactcccaatacc |
12094733 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
12094734 |
aataccaaaattaattaaattca |
12094756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 44277456 - 44277334
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44277456 |
aggacaagctagtttgacacaaaagttcctattatacccttgtctttgattttctccattttacatttatttaccccatctcataattactcccaatacc |
44277357 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44277356 |
aataccaaaattaattaaattca |
44277334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 19911561 - 19911683
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19911561 |
aggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccacctcataattactcccaatacc |
19911660 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
19911661 |
aataccaaaattaattaaattca |
19911683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 38805297 - 38805404
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38805297 |
aggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
38805396 |
T |
|
| Q |
117 |
aataccaa |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
38805397 |
aataccaa |
38805404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 202 - 367
Target Start/End: Original strand, 4227369 - 4227540
Alignment:
| Q |
202 |
atttcttgggagagtgcatgaataaatctacttaaaattgggtcaaca-------tttattagtggaaaataattattgtggagaaaatctagaatccaa |
294 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4227369 |
atttcttgggagactgcatgaataaatccacttaaaattggaccaacacattatatttattagtggaaaataattattgtggagaaaatttagaatccaa |
4227468 |
T |
|
| Q |
295 |
ttaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaa |
367 |
Q |
| |
|
|||||| |||| ||||||||||||| |||||||||||||||||| ||| ||| ||||||||||| |||||| |
|
|
| T |
4227469 |
ttaatt-gtaggcaagggtaaaatatacaaaatgtatccttaaattatcaaaaatacatgtatttttaaacaa |
4227540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 40931677 - 40931792
Alignment:
| Q |
20 |
acaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaataccaat |
119 |
Q |
| |
|
||||||||| || |||||||||||| |||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40931677 |
acaagctagattaacacaaaagttcctattatactcttgtctttgatttcctccattttatgtttatttaccccatctcatagttactcccaataccaat |
40931776 |
T |
|
| Q |
120 |
accaaaattaattaaa |
135 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40931777 |
accaaaattaattaaa |
40931792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 202 - 342
Target Start/End: Original strand, 4236415 - 4236562
Alignment:
| Q |
202 |
atttcttgggagagtgcatgaataaatctacttaaaattgggtcaaca-------tttattagtggaaaataattattgtggagaaaatctagaatccaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4236415 |
atttcttgggagagtgcatgaataaatccacttaaaattggaccaacacattatatttattagtggaaaataattattgtggagaaaatttagaatccaa |
4236514 |
T |
|
| Q |
295 |
ttaattagtagacaagggtaaaatagacaaaatgtatccttaaactat |
342 |
Q |
| |
|
|||||| || ||||||||||||| | |||||||||||||||||||| |
|
|
| T |
4236515 |
ttaattgcaaggcaagggtaaaatatataaaatgtatccttaaactat |
4236562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 4226758 - 4226856
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4226758 |
aggacaaactagtttgacacaaa-gttcctattatacccttgtgtttgatttcctccatttta--tttatttaccccatctcataattactctcaatacc |
4226854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 4235802 - 4235900
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
4235802 |
aggacaagctagtttgatacaaa-gttcctattatacccttgtgtttgatttcctccatttt--atttatttacccaatctcataattactctcaatacc |
4235898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 38805395 - 38805425
Alignment:
| Q |
109 |
ccaataccaataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38805395 |
ccaataccaataccaaaattaattaaattca |
38805425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 19911693 - 19911722
Alignment:
| Q |
110 |
caataccaataccaaaattaattaaattca |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19911693 |
caataccaataccaaaattaattaaattca |
19911722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 148 - 397
Target Start/End: Original strand, 3943541 - 3943790
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3943541 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa |
3943640 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3943641 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
3943740 |
T |
|
| Q |
348 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3943741 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
3943790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 148 - 397
Target Start/End: Original strand, 41959587 - 41959836
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
41959587 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttggaagagtgtatgagtaaatctacttaaaattgagtcaa |
41959686 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41959687 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
41959786 |
T |
|
| Q |
348 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41959787 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
41959836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 148 - 397
Target Start/End: Original strand, 9589409 - 9589658
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
9589409 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcaggagtaaatctacttaaaattaggtcaa |
9589508 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
9589509 |
catttattagtggaaaataattattgtggagaaaatctagaattcaattaattggtagacaagggtaaaatagacaaaatgcatacttaaactatgaaat |
9589608 |
T |
|
| Q |
348 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9589609 |
ggatatgtattttgaaacaaaaaatttctctaaaatagacatgtattttg |
9589658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 148 - 365
Target Start/End: Complemental strand, 13984664 - 13984447
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
13984664 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattggatcaa |
13984565 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13984564 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaacatgtatccttaaactatgaaat |
13984465 |
T |
|
| Q |
348 |
ggacatgtattttgaaac |
365 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
13984464 |
ggatatgtattttgaaac |
13984447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 41959130 - 41959252
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41959130 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
41959229 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41959230 |
aataccaaaattaattaaattca |
41959252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 13984992 - 13984870
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13984992 |
aggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
13984893 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13984892 |
aataccaaaattaattaaattca |
13984870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 3943112 - 3943234
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3943112 |
aggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
3943211 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3943212 |
aataccaaaattaattaaattca |
3943234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 9588722 - 9588844
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
||||||| ||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9588722 |
aggacaatctattttgacacaaaagttcctattatacccttgtctttgattttctccattttacatttatttaccccatctcataattactcccaatacc |
9588821 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9588822 |
aataccaaaattaattaaattca |
9588844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 283 - 397
Target Start/End: Complemental strand, 44227976 - 44227862
Alignment:
| Q |
283 |
tctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaa |
382 |
Q |
| |
|
||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||| |
|
|
| T |
44227976 |
tctagaatccaattagttggtatacaagggtaaaatagacaaaatgtatccttaaactatcaaaatgacatgcattttgaaacaaaaaatttctccaaaa |
44227877 |
T |
|
| Q |
383 |
tggacatgtattttg |
397 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44227876 |
tggacatgtattttg |
44227862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 44228229 - 44228112
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||| | |||| |||||||| |||||||||||||| ||| | ||||| ||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
44228229 |
aggacaagctagct-gacataaaagttcctattatacccttgttttttatttccttcattttacatttatttaccccatctaataatcacttccaatacc |
44228131 |
T |
|
| Q |
117 |
aataccaaaattaattaaa |
135 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
44228130 |
aataccaaatttaattaaa |
44228112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 1168413 - 1168499
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataatta |
105 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
1168413 |
aggacaagctattttgacacaaaagttcatagtttacccttgtctttgatttcctccatttt--atttatttaccccgtctcataatta |
1168499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 148 - 397
Target Start/End: Complemental strand, 25059713 - 25059464
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
25059713 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctgcttaaaattgggtcaa |
25059614 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25059613 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
25059514 |
T |
|
| Q |
348 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25059513 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
25059464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 148 - 397
Target Start/End: Complemental strand, 2911122 - 2910873
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2911122 |
taattaggagtagttagttacgatgaattaaagtgcagtagtcattggaaaataattttttggaagagtgcatgagtaaatctacttaaaattgggtcaa |
2911023 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2911022 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
2910923 |
T |
|
| Q |
348 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
2910922 |
ggacatgtattttgaaacaaaaaatttctttaaaatagacatgtattttg |
2910873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 2911549 - 2911427
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2911549 |
aggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
2911450 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2911449 |
aataccaaaattaattaaattca |
2911427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 25060134 - 25060012
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25060134 |
aggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactctcaatacc |
25060035 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25060034 |
aataccaaaattaattaaattca |
25060012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 148 - 396
Target Start/End: Complemental strand, 34222321 - 34222073
Alignment:
| Q |
148 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34222321 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa |
34222222 |
T |
|
| Q |
248 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34222221 |
catttattagtggaaaataattattgtggagaaaatctaaaattcaattaattgatagacaagggtaaaatagacaaaatgtatccttaaattatgaaat |
34222122 |
T |
|
| Q |
348 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtatttt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34222121 |
ggacatgtattttgaaacaaaaaatttctataaaatggacatgtatttt |
34222073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 34224379 - 34224257
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34224379 |
aggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatacc |
34224280 |
T |
|
| Q |
117 |
aataccaaaattaattaaattca |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34224279 |
aataccaaaattaattaaattca |
34224257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 8e-72; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 200 - 397
Target Start/End: Original strand, 19362019 - 19362216
Alignment:
| Q |
200 |
taatttcttgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaat |
299 |
Q |
| |
|
|||||||| |||||||||||||| |||||| ||||||||||||||||||||||| | ||| ||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
19362019 |
taatttctagggagagtgcatgagtaaatccacttaaaattgggtcaacatttactggtgtaaaataattattgaggagaacatctagaatccaattaat |
19362118 |
T |
|
| Q |
300 |
tagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg |
397 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19362119 |
tggtagacaatggtaaaatagacaaaatgtatccttaaactatcaaaatgacatgtattttacaacaaaaaatttctctaaaatggacatgtattttg |
19362216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 208 - 376
Target Start/End: Original strand, 20543325 - 20543493
Alignment:
| Q |
208 |
tgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagac |
307 |
Q |
| |
|
||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| | |
|
|
| T |
20543325 |
tgggaaagtgcatgagtaaatccacttaaaattgggtcaacatttattaatggaaaataattattatggagaaaatctagaatccaattaattggtaggc |
20543424 |
T |
|
| Q |
308 |
aagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttct |
376 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
20543425 |
aagggtagaatagacaaaatgtatccttaaactatcaaaatgacatgtattttgaaacaaaaactttct |
20543493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 19361699 - 19361817
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19361699 |
aggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttatatttatttaccccatctaataattactcccaatacc |
19361798 |
T |
|
| Q |
117 |
aataccaaaattaattaaa |
135 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
19361799 |
aataccaaaattaattaaa |
19361817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 20541513 - 20541635
Alignment:
| Q |
17 |
aggacaagctagtttgacacaaaagttcatattataccctt----gtctttgacttcctccattttacatttatttaccccatctcataattactcccaa |
112 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
20541513 |
aggacaaactagttcgacacaaaagttcctattatacccttacttgtctttgatttcctctgttttacatttatttacctcatctcataattactcctga |
20541612 |
T |
|
| Q |
113 |
taccaataccaaaattaattaaa |
135 |
Q |
| |
|
|||||||| ||||| |||||||| |
|
|
| T |
20541613 |
taccaatatcaaaactaattaaa |
20541635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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