View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17231_low_4 (Length: 394)
Name: NF17231_low_4
Description: NF17231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17231_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 40811237 - 40811602
Alignment:
| Q |
1 |
caatatatatagtacacgtgaatgttacggtttaaggtaccaaacatcaatactaactagtagtaaccagaagcaacaacaacaataattaatagtacta |
100 |
Q |
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| T |
40811237 |
caatatatatagtacacgtgaatgttacggtttaaggtaccaaacatcaatactaactagtagtaaccagaagcaacaacaacaataat----agtacta |
40811332 |
T |
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| Q |
101 |
ctacgtaacttaaaatttataaaaaa-ttaaatcacgcattctattttgctttgtacccagaaagaatccagcaaaaatgtagtaaaatgtttttatgtt |
199 |
Q |
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| T |
40811333 |
ctacgtaacttaaaatttataaaaaaattaaatcacgcattctattttgctttgttctcagaaagaatccagcaaaaatgta---aaatgtttttatgtt |
40811429 |
T |
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| Q |
200 |
gatttataatttagtggagttgtcaaacatgcagatgcaacaatgcatgtgcttgtggtgatggtagtggaaaatagatatatgatatgatatgatatga |
299 |
Q |
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| T |
40811430 |
gatttataatttagtggagttgtcaaacatgcagatgcaacaatgcatgtgcctgtggtgatggtagtggaaaatagatatatgatatgatatgatatga |
40811529 |
T |
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| Q |
300 |
ggtacggtaagcacaaggacccattaccactggtgcagagatctctgcttactcagtgttgtttgttggtact |
372 |
Q |
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| T |
40811530 |
ggtacggtaagcacaaggacccattaccactggtgcagagatctctgcttactcagtgttgtttgttggtact |
40811602 |
T |
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