View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17231_low_6 (Length: 352)
Name: NF17231_low_6
Description: NF17231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17231_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 34910066 - 34910384
Alignment:
| Q |
19 |
caaaaggacttatttgagtaggtgtatagccaaaacctccaaaagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctcaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34910066 |
caaaaggacttatttgagtaggtgtatagccaaaacctccaaaagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctcaga |
34910165 |
T |
|
| Q |
119 |
tagaattagaaaactgcaaaatataataacaataaaaaaggcagaaaagtaagccaaaagatgctaatgaataccattattagatattaataaaagaaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34910166 |
tagaattagaaaactgcaaaatataataacaataaaaaaggcagaaaagtaagccaaaagatgctaatgaataccattattagatattaataaaagaaag |
34910265 |
T |
|
| Q |
219 |
atggcataaactagctaatacaaatcttagtcgttatgtaatctttaggtctttaaaaagaaccgtaaattagcatcgactagagaacacatataactga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34910266 |
atggcataaactagctaatacaaatcttagtcgttatgtaatctttaggtctttacaaagaaccgtaaattagcatcgactagagaacacatataactga |
34910365 |
T |
|
| Q |
319 |
aagaaatcacattccttca |
337 |
Q |
| |
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||||||||||||||||||| |
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| T |
34910366 |
aagaaatcacattccttca |
34910384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 28543502 - 28543241
Alignment:
| Q |
19 |
caaaaggacttatttgagtaggtgtatagccaaaacctccaaaagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctcaga |
118 |
Q |
| |
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||||||||||||| |||||||| | |||||||||||||||||| |||| |||| | |||| |||| ||||||||||||||||||||| |||| ||| | |
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| T |
28543502 |
caaaaggacttatctgagtaggcatcgagccaaaacctccaaaagaaggctcctggcaaaaggatgatgatcctgggaaggaagagagtcggttttcaaa |
28543403 |
T |
|
| Q |
119 |
tagaattagaaaactgcaaaatataataa---caataaaaaaggcagaaaagtaagccaaaagatgctaatgaataccattattagatattaataaaaga |
215 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
28543402 |
tagaattagaaaac-gcaaaatataataataacaataaaaaagggagaaaactaagccaaaagatgctaatgattaccattattagatattaacaaaaga |
28543304 |
T |
|
| Q |
216 |
aagatggcataaactagctaatacaaatcttagtcgttatgtaatctttaggtctttaaaaag |
278 |
Q |
| |
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|||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28543303 |
aagatgacataaactagctaacacatatcttagtcgttatgtaatctttaggtctttaaaaag |
28543241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 24 - 256
Target Start/End: Complemental strand, 28545732 - 28545497
Alignment:
| Q |
24 |
ggacttatttgagtaggtgtatagccaaaacctccaaaagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctcagatagaa |
123 |
Q |
| |
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|||||| |||||||||| ||| ||||||||||| ||||||||||| |||||||||||| ||| |||||||||| |||| | | |||||| | |||||||| |
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| T |
28545732 |
ggacttgtttgagtaggagtagagccaaaacctacaaaagcaggctcctgaccaaagagtgatgatcctgggagggaacaaacttggtt-taagatagaa |
28545634 |
T |
|
| Q |
124 |
ttagaaaactgcaaaatataataa--caataaaaaa--ggcagaaaagtaagccaaaagatgctaatgaataccattattagatattaataaaagaaaga |
219 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
28545633 |
ttagaaaactacaaaatataataatacaataaaaaaaaggcagaaacgtaagccaaaagatgctaatatttaccattattagctattaataaaagaaaga |
28545534 |
T |
|
| Q |
220 |
tggcataaactagctaatacaaatcttagtcgttatg |
256 |
Q |
| |
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|| ||||||||||||||||| |||||||||| ||||| |
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| T |
28545533 |
tgacataaactagctaatacgaatcttagtctttatg |
28545497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 34896267 - 34896584
Alignment:
| Q |
19 |
caaaaggacttatttgagtaggtgtatagccaaaacctccaaaagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctcaga |
118 |
Q |
| |
|
|||| |||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||| | ||| |||||| ||||| | |||||| |||||| |
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| T |
34896267 |
caaatggacttgtttgagtaggagtagagccaaaacctccaaaagcaggcttctgaccaaacactgatgatcctataaaggagaaaagttggatctcagt |
34896366 |
T |
|
| Q |
119 |
tagaattagaaaactgcaaaatataataa--------caataaaaaaggcagaaaagtaagccaaaagatgctaatgaataccattattagatattaata |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
34896367 |
tagaattagaaaactgcaaaatctaataatataaaaacaataaaaa-ggcagaaaagtaagccaaaagatgctaatgattaccattattagata---atg |
34896462 |
T |
|
| Q |
211 |
aaagaaagatggcataaactagctaatacaaatcttagtcgttatgtaatctttaggtctttaaaaagaaccgtaaattagcatcgactagagaacacat |
310 |
Q |
| |
|
|||||| || | ||||||||||||||||||||||| ||| |||| |||||||||||||||| |||||||| ||||| || || || ||||||| ||| |
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| T |
34896463 |
aaagaaggacgacataaactagctaatacaaatctcagttgttacgtaatctttaggtcttcaaaaagaaatgtaaactaaaattgaatagagaatgcat |
34896562 |
T |
|
| Q |
311 |
ataactgaaagaaatcacattc |
332 |
Q |
| |
|
||| |||||||||||||||||| |
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|
| T |
34896563 |
atagctgaaagaaatcacattc |
34896584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 34904991 - 34905184
Alignment:
| Q |
19 |
caaaaggacttatttgagtaggtgtatagccaaaacctccaaaagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctcaga |
118 |
Q |
| |
|
|||| |||||| |||||||||| || ||||||||||||||||||||||| ||||||||| ||| |||||| ||| | | ||||||||||||| |
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| T |
34904991 |
caaatggacttgtttgagtaggattagagccaaaacctccaaaagcaggcttctgaccaaacgctgatgatcctataaagtagaaaagttggttctcagt |
34905090 |
T |
|
| Q |
119 |
tagaattagaaaactgcaaaatataataa--------caataaaaaaggcagaaaagtaagccaaaagatgctaatgaataccattattagatat |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||||||| |
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| T |
34905091 |
tagaattagaaaactgcaaaatctaataatataaaaacaataaaa-aggcagataagtaagccaaaagatgccaatgattaccattattagatat |
34905184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 236 - 337
Target Start/End: Original strand, 34905183 - 34905284
Alignment:
| Q |
236 |
atacaaatcttagtcgttatgtaatctttaggtctttaaaaagaaccgtaaattagcatcgactagagaacacatataactgaaagaaatcacattcctt |
335 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||||| |||||||| |||||||| || || ||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
34905183 |
atacaaatctcagttgtcatgtaatctttaggtcttcaaaaagaaatgtaaattaaaattgaatagagaatacatatagctgaaagaaatcacattcctt |
34905282 |
T |
|
| Q |
336 |
ca |
337 |
Q |
| |
|
|| |
|
|
| T |
34905283 |
ca |
34905284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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