View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17231_low_8 (Length: 312)

Name: NF17231_low_8
Description: NF17231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17231_low_8
NF17231_low_8
[»] scaffold0004 (1 HSPs)
scaffold0004 (3-312)||(81573-81882)
[»] chr3 (12 HSPs)
chr3 (1-71)||(37788472-37788542)
chr3 (1-70)||(16354899-16354968)
chr3 (1-70)||(27093368-27093437)
chr3 (1-70)||(5499414-5499483)
chr3 (1-70)||(14186648-14186716)
chr3 (3-70)||(32651447-32651513)
chr3 (36-74)||(203086-203124)
chr3 (1-71)||(27923050-27923120)
chr3 (1-67)||(53412948-53413014)
chr3 (1-58)||(8368806-8368863)
chr3 (1-58)||(11612311-11612368)
chr3 (14-67)||(28928899-28928952)
[»] chr8 (18 HSPs)
chr8 (1-70)||(12988428-12988497)
chr8 (1-70)||(19703494-19703563)
chr8 (1-68)||(8794352-8794419)
chr8 (2-68)||(2203494-2203560)
chr8 (1-70)||(16852340-16852409)
chr8 (1-70)||(33017214-33017283)
chr8 (4-55)||(1157074-1157125)
chr8 (1-68)||(3624582-3624649)
chr8 (3-70)||(5264544-5264611)
chr8 (1-52)||(6536538-6536589)
chr8 (1-72)||(18540296-18540367)
chr8 (15-70)||(20994479-20994534)
chr8 (4-70)||(18897166-18897232)
chr8 (1-70)||(26688865-26688934)
chr8 (1-70)||(44780121-44780190)
chr8 (8-72)||(6569785-6569849)
chr8 (1-69)||(29858056-29858124)
chr8 (14-70)||(31381356-31381412)
[»] chr2 (18 HSPs)
chr2 (1-70)||(40416397-40416466)
chr2 (1-71)||(42327402-42327472)
chr2 (1-70)||(11251087-11251156)
chr2 (1-70)||(34041595-34041664)
chr2 (1-70)||(37480075-37480144)
chr2 (1-71)||(42922413-42922484)
chr2 (4-58)||(12994386-12994440)
chr2 (1-70)||(19244109-19244178)
chr2 (1-70)||(29503271-29503340)
chr2 (1-70)||(29996467-29996536)
chr2 (5-68)||(12086140-12086203)
chr2 (1-58)||(3001391-3001448)
chr2 (1-70)||(4060221-4060290)
chr2 (1-70)||(11062360-11062429)
chr2 (1-70)||(23052530-23052599)
chr2 (1-70)||(28846691-28846760)
chr2 (1-70)||(39714992-39715061)
chr2 (1-70)||(42602554-42602623)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-67)||(94978-95044)
[»] chr7 (22 HSPs)
chr7 (1-70)||(26459417-26459486)
chr7 (1-47)||(21558151-21558197)
chr7 (4-58)||(21877820-21877874)
chr7 (4-70)||(23552118-23552184)
chr7 (1-70)||(7801180-7801249)
chr7 (1-58)||(14058265-14058322)
chr7 (1-58)||(14368293-14368350)
chr7 (1-70)||(22760863-22760932)
chr7 (1-58)||(41519271-41519328)
chr7 (1-70)||(43215184-43215253)
chr7 (4-71)||(39499729-39499796)
chr7 (1-71)||(5273597-5273667)
chr7 (4-70)||(23301612-23301678)
chr7 (4-70)||(25021345-25021411)
chr7 (1-71)||(25132385-25132455)
chr7 (4-70)||(48716280-48716346)
chr7 (1-70)||(15137553-15137622)
chr7 (1-70)||(17041019-17041088)
chr7 (1-70)||(23945861-23945930)
chr7 (1-70)||(39631844-39631913)
chr7 (1-70)||(42836008-42836077)
chr7 (5-69)||(22927477-22927541)
[»] chr5 (13 HSPs)
chr5 (1-70)||(87430-87499)
chr5 (1-70)||(25627057-25627126)
chr5 (4-72)||(16457808-16457876)
chr5 (4-70)||(21549147-21549213)
chr5 (1-70)||(30700625-30700692)
chr5 (1-58)||(892481-892538)
chr5 (1-70)||(14285161-14285230)
chr5 (1-70)||(34984806-34984875)
chr5 (14-74)||(18437081-18437141)
chr5 (16-70)||(26598524-26598578)
chr5 (4-70)||(30883208-30883274)
chr5 (1-70)||(7918476-7918545)
chr5 (14-70)||(30735090-30735146)
[»] chr4 (7 HSPs)
chr4 (1-70)||(37109358-37109427)
chr4 (1-70)||(47044717-47044786)
chr4 (3-70)||(46545711-46545778)
chr4 (1-67)||(7292805-7292871)
chr4 (1-70)||(7949461-7949530)
chr4 (42-70)||(2606436-2606464)
chr4 (4-72)||(8030214-8030282)
[»] chr1 (17 HSPs)
chr1 (1-70)||(36371470-36371539)
chr1 (1-68)||(33700780-33700847)
chr1 (3-58)||(34460918-34460973)
chr1 (4-74)||(37400270-37400340)
chr1 (1-70)||(4566548-4566617)
chr1 (1-70)||(9165202-9165271)
chr1 (1-70)||(19528334-19528403)
chr1 (34-70)||(12993895-12993931)
chr1 (2-58)||(35699964-35700020)
chr1 (11-58)||(35187931-35187978)
chr1 (1-52)||(50919972-50920023)
chr1 (1-71)||(2219971-2220041)
chr1 (6-76)||(31794276-31794346)
chr1 (4-50)||(36124853-36124899)
chr1 (1-70)||(51814494-51814563)
chr1 (1-58)||(52336781-52336838)
chr1 (1-53)||(11063573-11063625)
[»] scaffold0517 (1 HSPs)
scaffold0517 (4-74)||(7736-7806)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-58)||(19969-20026)
[»] chr6 (5 HSPs)
chr6 (1-58)||(34444815-34444872)
chr6 (8-70)||(12188317-12188379)
chr6 (1-50)||(6385882-6385931)
chr6 (1-50)||(10338181-10338230)
chr6 (1-70)||(12234514-12234583)
[»] scaffold0187 (2 HSPs)
scaffold0187 (14-58)||(12442-12486)
scaffold0187 (14-58)||(22770-22814)


Alignment Details
Target: scaffold0004 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 3 - 312
Target Start/End: Original strand, 81573 - 81882
Alignment:
Q  3 ctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttcaaaggtccaagatgctgctcaagtttttctc 102  Q
    |||||||||| |||||||||||||||  || ||||||  ||||| |||||| |||| | ||||| |||||||||||||||||||||||||||||||||||    
T  81573 ctgagaccttgaggaggagcacacttccagattccaaaccaatatcactagaccaaccaaagtgagttcaaaggtccaagatgctgctcaagtttttctc 81672  T
Q  103 aaaaggagagggtcaaggacagtatgaatggaatgcaacagaagaatcaaatatataatgactccgatgaaactagcgactaaagctcctgtcatgtgat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81673 aaaaggagagggtcaaggacagtatgaatggaatgcaacagaagaatcaaatatataatgactccgatgaaactagcgactaaagctcctgtcatgtgat 81772  T
Q  203 tgcaaaatttgggaactgaaccacaaatcggtagccaagcagcataattgtttccattctttgccacttgagctatagccaaagctgcagagatgcttga 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81773 tgcaaaatttgggaactgaaccacaaatcggtagccaagcagcataattgtttccattctttgccacttgagctatagccaaagctgcagagatgcttga 81872  T
Q  303 gataagtaac 312  Q
    ||||||||||    
T  81873 gataagtaac 81882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 37788472 - 37788542
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttc 71  Q
    |||||||||||| ||||||||||||||  |||||||||||||||||||||| |||||| | ||||||||||    
T  37788472 acctgagaccttgaggaggagcacactcctaggttccaagtcaataccactgggccaacccaagtgggttc 37788542  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16354899 - 16354968
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||| | ||||||||||||||   |||||||||| ||||||||||||||||| | |||||||||    
T  16354899 acctgagaccctgaggaggagcacactcacaggttccaagccaataccactaggccaacccaagtgggtt 16354968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27093368 - 27093437
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   | |||||||| ||||||||||||||||| | |||||||||    
T  27093368 acctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 27093437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5499414 - 5499483
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||| |||||||||||||||||||||| | || |  |||||||||||||| ||||||| | |||||||||    
T  5499414 accttagaccttaaggaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgggtt 5499483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14186716 - 14186648
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   |||| ||||| ||||||||||||||||| | |||||||||    
T  14186716 acctgagaccttgaggaggagcacactcc-aggtcccaagacaataccactaggccaacccaagtgggtt 14186648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 32651447 - 32651513
Alignment:
Q  3 ctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||| ||| ||||||||||||||   |||| ||||| ||||||||||||||||| |||||||||||    
T  32651447 ctgagatcttgaggaggagcacactcccaggtcccaagccaataccactaggccaa-ctaagtgggtt 32651513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 203124 - 203086
Alignment:
Q  36 ccaagtcaataccactaggccaatctaagtgggttcaaa 74  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  203124 ccaagtcaataccactaggccaacccaagtgggttcaaa 203086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27923050 - 27923120
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttc 71  Q
    |||||||||  | |||||||||||||||  | || ||||| ||||||||| ||||||| ||||||||||||    
T  27923050 acctgagactatgaggaggagcacacttccatgtcccaagccaataccaccaggccaacctaagtgggttc 27923120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 53413014 - 53412948
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgg 67  Q
    |||||||||||| ||||||||||||||   ||||| |||| |||||||||||| |||| | ||||||    
T  53413014 acctgagaccttgaggaggagcacactcccaggttacaagccaataccactagaccaacccaagtgg 53412948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8368806 - 8368863
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    |||||||||||  |||| |||||||||   ||||| ||||||||||||||||||||||    
T  8368806 acctgagacctcgaggatgagcacactaccaggtttcaagtcaataccactaggccaa 8368863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11612368 - 11612311
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    |||||||||||||||||||||||||||   || | |||||| |||||||| |||||||    
T  11612368 acctgagaccttaaggaggagcacactcccagctcccaagtgaataccaccaggccaa 11612311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 28928899 - 28928952
Alignment:
Q  14 aggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgg 67  Q
    |||||||||||||| | || | ||||| ||||||||||||||||||| ||||||    
T  28928899 aggaggagcacactctcagatcccaagccaataccactaggccaatccaagtgg 28928952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12988497 - 12988428
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||| ||||| |||||||||||||||  |||||||||| ||||||||||||||||||| |||||||||    
T  12988497 acctgaaaccttgaggaggagcacacttccaggttccaagccaataccactaggccaatccaagtgggtt 12988428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19703494 - 19703563
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| |||||||||||||| | |||| ||||| ||||||||||||||||| | |||||||||    
T  19703494 acctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggtt 19703563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 8794352 - 8794419
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtggg 68  Q
    |||||||||| | |||||||||||||||  |||||||||| ||||||||||| ||||||| |||||||    
T  8794352 acctgagaccctgaggaggagcacacttccaggttccaagccaataccactatgccaatccaagtggg 8794419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 2203560 - 2203494
Alignment:
Q  2 cctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtggg 68  Q
    ||||||||||| ||||||||||||||   |||| ||||| ||||||||||||||||| | |||||||    
T  2203560 cctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 2203494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 16852409 - 16852340
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||  ||||||||||||||   |||| ||||| ||||||||||||||||| | |||||||||    
T  16852409 acctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 16852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 33017283 - 33017214
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| |||||||||||||||  |||||||||| |||||  || ||||||| | |||||||||    
T  33017283 acctgagaccttgaggaggagcacacttccaggttccaagccaatatgacaaggccaacccaagtgggtt 33017214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 1157125 - 1157074
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggc 55  Q
    |||||| | ||| ||||||||||||| |||||||||||||||||||| ||||    
T  1157125 tgagacatcaagaaggagcacactttcaggttccaagtcaataccacgaggc 1157074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3624649 - 3624582
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtggg 68  Q
    |||||||||||| | ||||||||||||   |||| ||||| ||||||||||||||||| | |||||||    
T  3624649 acctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 3624582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 5264611 - 5264544
Alignment:
Q  3 ctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||  |||||||||||| |   |||||||||| ||||||||||||||||| | |||||||||    
T  5264611 ctgagacctcgaggaggagcacattcccaggttccaagccaataccactaggccaacccaagtgggtt 5264544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6536589 - 6536538
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccacta 52  Q
    |||||||||||| ||||||||||||||  ||||| ||||| |||||||||||    
T  6536589 acctgagaccttgaggaggagcacactcctaggtcccaagccaataccacta 6536538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 18540367 - 18540296
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttca 72  Q
    |||||||||||| ||||| || |||||   |||| ||||| ||||||||||||||||| | |||||||||||    
T  18540367 acctgagaccttgaggagaagtacactcccaggtcccaagccaataccactaggccaacccaagtgggttca 18540296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 20994479 - 20994534
Alignment:
Q  15 ggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||||   |||| ||||||||||||||||||||||| | |||||||||    
T  20994479 ggaggagcacactcccaggtcccaagtcaataccactaggccaacccaagtgggtt 20994534  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 18897232 - 18897166
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||||| |||||||||||||| | |||| ||||  ||| ||||||||||||| | |||||||||    
T  18897232 tgagaccttgaggaggagcacactctaaggtcccaaaccaacaccactaggccaacccaagtgggtt 18897166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26688934 - 26688865
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   |||| ||||| ||| ||||| ||||||| | |||||||||    
T  26688934 acctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 26688865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 44780121 - 44780190
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   | || ||||| |||| |||||||||||| | |||||||||    
T  44780121 acctgagaccttgaggaggagcacactcccaagtcccaagccaatgccactaggccaacccaagtgggtt 44780190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 6569785 - 6569849
Alignment:
Q  8 accttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttca 72  Q
    |||| |||||||||||||||   || | ||||| ||||| ||||||||||| |||||||||||||    
T  6569785 acctaaaggaggagcacactcccagatcccaagccaatatcactaggccaacctaagtgggttca 6569849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29858056 - 29858124
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggt 69  Q
    |||||||||||  ||||||||||||||    ||| ||||| ||||||||| ||||||||| ||||||||    
T  29858056 acctgagacctcgaggaggagcacactccctggtcccaagccaataccaccaggccaatccaagtgggt 29858124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 31381412 - 31381356
Alignment:
Q  14 aggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||||||  || ||||||||||||||||||| | ||||| | |||||||    
T  31381412 aggaggagcacacttccagattccaagtcaataccactatgtcaatccaggtgggtt 31381356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 40416397 - 40416466
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||||||||||||||||||| |||   |||||||||||||||||||||||||||| | |||||||||    
T  40416397 acctgagaccttaaggaggagcatactcccaggttccaagtcaataccactaggccaacccaagtgggtt 40416466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 42327402 - 42327472
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttc 71  Q
    |||||||||||| ||||||||||||||   |||| ||||| ||||||||||||||||| | ||||||||||    
T  42327402 acctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttc 42327472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11251156 - 11251087
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| |||||||||||||||  | || ||||| ||||||||||| ||||| |||||||||||    
T  11251156 acctgagaccttgaggaggagcacacttccaagtcccaagccaataccactaagccaacctaagtgggtt 11251087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34041595 - 34041664
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| |||||||||||||| | || | | ||||||||||||||||||||| | |||||||||    
T  34041595 acctgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggtt 34041664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 37480144 - 37480075
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| |||||||||||||| | |||| ||||| ||||||||| ||||||| | |||||||||    
T  37480144 acctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 42922484 - 42922413
Alignment:
Q  1 acctgagacctta-aggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttc 71  Q
    ||||||||||||  ||||||||||||||   |||||||||| ||||||||||||||||| | ||||||||||    
T  42922484 acctgagacctttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggttc 42922413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 12994386 - 12994440
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||| ||||    
T  12994386 tgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaa 12994440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19244178 - 19244109
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||||||||  ||||||||||||| | |||| |||||||||||||| ||| |||| | |||||||||    
T  19244178 acctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaacccaagtgggtt 19244109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29503340 - 29503271
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   |||| ||||  ||||||||||||||||| | |||||||||    
T  29503340 acctgagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggtt 29503271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29996467 - 29996536
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||||||| |||| ||| |   | ||||||||  ||||||||||||||||||||||||||||    
T  29996467 acctgagaccttaaggcggagtacattcacatgttccaagctaataccactaggccaatctaagtgggtt 29996536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 12086140 - 12086203
Alignment:
Q  5 gagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtggg 68  Q
    |||||||| |||||||||||||||  |||| ||||| ||||||||| |||||||  ||||||||    
T  12086140 gagaccttgaggaggagcacacttccaggtcccaagccaataccaccaggccaacttaagtggg 12086203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3001448 - 3001391
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    |||||||| || |||||||||||||||  ||| |  ||||||||||||||||||||||    
T  3001448 acctgagatctcaaggaggagcacactcctagatctcaagtcaataccactaggccaa 3001391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4060221 - 4060290
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||| ||| ||||| |||||||| | ||||| |||  ||||||||||||||||| | |||||||||    
T  4060221 acctgagatcttgaggagaagcacactctcaggtttcaaaccaataccactaggccaacccaagtgggtt 4060290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11062429 - 11062360
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||| ||||||||   | |||||||| ||||| ||||||||||| | |||||||||    
T  11062429 acctgagaccttgaggagaagcacactcccaagttccaagccaatatcactaggccaacccaagtgggtt 11062360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 23052530 - 23052599
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||| ||||||||   | || ||||| ||||||||| ||||||| |||||||||||    
T  23052530 acctgagaccttgaggagaagcacactcccaagtcccaagccaataccaccaggccaacctaagtgggtt 23052599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 28846760 - 28846691
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||||| |  ||||||||||||||   |||| ||||||||||||||||||  ||| |||||||||||    
T  28846760 acctgagacatcgaggaggagcacactcccaggtcccaagtcaataccactagatcaacctaagtgggtt 28846691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39715061 - 39714992
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||  ||||||||||||||   |||| ||||||||||||||| | ||||| | |||||||||    
T  39715061 acctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggtt 39714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42602623 - 42602554
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||| ||||||| || |||||||||||   |||| ||||| ||||||||||||||||| | |||||||||    
T  42602623 acctaagaccttgagaaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42602554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 94978 - 95044
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgg 67  Q
    |||||||||||| ||||||||||||||   |||||||||| ||||||||||||||||| | ||||||    
T  94978 acctgagaccttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgg 95044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26459417 - 26459486
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   |||| ||||| ||||||||||||||||| | |||||||||    
T  26459417 acctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21558197 - 21558151
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaatac 47  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||    
T  21558197 acctgagaccttgaggaggagcacattcttaggttccaagtcaatac 21558151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 21877874 - 21877820
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    ||||||||||||||||||||| ||   |||| |||||||||||||||||||||||    
T  21877874 tgagaccttaaggaggagcaccctcccaggtcccaagtcaataccactaggccaa 21877820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 23552184 - 23552118
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||||| ||||||||||||||   |||| ||||||||||| ||||||||||| | |||||||||    
T  23552184 tgagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggtt 23552118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 7801249 - 7801180
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| | ||||||||||||   |||| ||||||||||||||| ||||||| | |||||||||    
T  7801249 acctgagaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14058322 - 14058265
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    |||||||||||| |||| ||||||||| | |||||||||| ||||||||| |||||||    
T  14058322 acctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggccaa 14058265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14368350 - 14368293
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    |||||||||||| |||| ||||||||| | |||||||||| ||||||||| |||||||    
T  14368350 acctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggccaa 14368293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22760932 - 22760863
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   |||| ||||||||||||||| || |||| | |||||||||    
T  22760932 acctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41519271 - 41519328
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    |||||||||||| ||||||||||||||  ||  | |||||||||||||||||||||||    
T  41519271 acctgagaccttgaggaggagcacactcctaaatcccaagtcaataccactaggccaa 41519328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43215253 - 43215184
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   |||| ||||| |||||||||||| |||| | |||||||||    
T  43215253 acctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggtt 43215184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 39499729 - 39499796
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttc 71  Q
    ||||||||||| ||||| ||||||   |||| ||||| ||||||||||||||||| | ||||||||||    
T  39499729 tgagaccttaaagaggaacacactcacaggtcccaagccaataccactaggccaacccaagtgggttc 39499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 5273597 - 5273667
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttc 71  Q
    |||| ||||||| |||||||||||||| | |||| ||||| ||| ||||| ||||||| | ||||||||||    
T  5273597 acctaagaccttgaggaggagcacactctaaggtcccaagccaacaccaccaggccaacccaagtgggttc 5273667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 23301612 - 23301678
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||| |||||||||||||||   | || ||||||||||||||| ||||||| | |||||||||    
T  23301612 tgagacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggtt 23301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 25021345 - 25021411
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||| || ||||||||||||||   |||| ||||| ||||||||||||||||| | |||||||||    
T  25021345 tgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 25021411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 25132385 - 25132455
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttc 71  Q
    ||||||||||||||| |||||||||||  ||||| | |||||||||||||  ||| ||  |||||||||||    
T  25132385 acctgagaccttaagaaggagcacactcctaggtcctaagtcaataccaccgggctaacttaagtgggttc 25132455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 48716346 - 48716280
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||||||||||||| ||||||   || |||||||||||||| |||| |||||  ||||||||||    
T  48716346 tgagaccttaaggaggaacacactcccagattccaagtcaatactactaagccaacttaagtgggtt 48716280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15137622 - 15137553
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||  ||  | |||||||| |||||| ||||||| | |||||||||    
T  15137622 acctgagaccttgaggaggagcacactcctaaatcccaagtcagtaccaccaggccaacccaagtgggtt 15137553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 17041019 - 17041088
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| |||||||||||||||  || | ||||| |||| ||||||| |||| | |||||||||    
T  17041019 acctgagaccttgaggaggagcacacttccagatcccaagccaatgccactagaccaacccaagtgggtt 17041088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23945930 - 23945861
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||||||| || |||||||||| | | |||||| |||||||||||| |||| ||| | |||||||||    
T  23945930 acctgagacctcaatgaggagcacattctcaggttctaagtcaataccattaggtcaacccaagtgggtt 23945861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39631913 - 39631844
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| |||||||||  |||   |||| ||||| ||||||||||||||||| | |||||||||    
T  39631913 acctgagaccttgaggaggagcttactcccaggtcccaagccaataccactaggccaacccaagtgggtt 39631844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 42836008 - 42836077
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||| |||| |||| |||||||||   |||| ||||| ||||||||||||||||| | |||||||||    
T  42836008 acctgaggccttgaggaagagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42836077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 22927541 - 22927477
Alignment:
Q  5 gagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggt 69  Q
    |||||||| ||||| ||||||||  ||| | |||||| |||||||||||||||| | ||||||||    
T  22927541 gagacctttaggagaagcacactcctagatcccaagttaataccactaggccaacccaagtgggt 22927477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 87430 - 87499
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   || ||||||| ||||||||||||||||| | |||||||||    
T  87430 acctgagaccttgaggaggagcacactcccagattccaaggcaataccactaggccaaccgaagtgggtt 87499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 25627126 - 25627057
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   | |||||||| ||||||||||||||||| | |||||||||    
T  25627126 acctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 16457876 - 16457808
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttca 72  Q
    ||||||||| ||||||||||||||   |||| ||||| ||||||||| ||||||| |||||||||||||    
T  16457876 tgagaccttgaggaggagcacactccaaggtcccaagccaataccaccaggccaacctaagtgggttca 16457808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 21549147 - 21549213
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||| |||||||||||||||||   |||| ||||| ||||||||||||||||| | |||||||||    
T  21549147 tgagactttaaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30700625 - 30700692
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||||||||||| |||||||| ||   ||||| ||||||||||| |||||||||| |||||||||||    
T  30700625 acctgagaccttaagaaggagcactctc--aggttacaagtcaatacgactaggccaacctaagtgggtt 30700692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 892481 - 892538
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    |||||||||||| |||||||| ||||| | |||| ||||| |||||||||||||||||    
T  892481 acctgagaccttgaggaggagtacactctgaggtcccaagccaataccactaggccaa 892538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14285230 - 14285161
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   |||||||||| |||| ||||| |||||| | |||||||||    
T  14285230 acctgagaccttgaggaggagcacactcccaggttccaagccaattccactcggccaacccaagtgggtt 14285161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34984875 - 34984806
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||| ||||||| ||||||||||||||   |||||||||| |||||||||||| |||| | |||||||||    
T  34984875 acctaagaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgggtt 34984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 18437141 - 18437081
Alignment:
Q  14 aggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttcaaa 74  Q
    |||||||||||||| | | || |||||| |||||||||||||||| |||||||| ||||||    
T  18437141 aggaggagcacactctcaagtcccaagttaataccactaggccaacctaagtggattcaaa 18437081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 26598578 - 26598524
Alignment:
Q  16 gaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| | || | ||||| ||||||||||||||||||| |||||||||    
T  26598578 gaggagcacactctcagatcccaagccaataccactaggccaatccaagtgggtt 26598524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 30883208 - 30883274
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||||| ||||||||||||||   |||| ||||| |||||||||||| |||| | |||||||||    
T  30883208 tgagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggtt 30883274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7918476 - 7918545
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||| ||||||| ||||||||  ||||   |||||||||| ||||||||||||||||| | |||||||||    
T  7918476 acctaagaccttgaggaggagtgcactcccaggttccaagccaataccactaggccaacccaagtgggtt 7918545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 30735090 - 30735146
Alignment:
Q  14 aggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||||| | ||||| ||||||||||| |||||| ||| | |||||||||    
T  30735090 aggaggagcacactctcaggttacaagtcaatacgactaggtcaacccaagtgggtt 30735146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 37109358 - 37109427
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   |||| ||||| ||||||||||||||||| | |||||||||    
T  37109358 acctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47044786 - 47044717
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||  |||||||||| ||| | || | ||||||||||||||| ||||||||| |||||||||    
T  47044786 acctgagacctcgaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtt 47044717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 46545778 - 46545711
Alignment:
Q  3 ctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||| ||| |||||||||||||| | ||||  |||| ||||||||||||||||| | |||||||||    
T  46545778 ctgagatcttgaggaggagcacactctcaggtctcaagccaataccactaggccaacccaagtgggtt 46545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7292805 - 7292871
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgg 67  Q
    ||||||||| || ||||||||||||||   |||||||||| |||||||||||| |||| | ||||||    
T  7292805 acctgagactttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgg 7292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7949461 - 7949530
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||   |||| ||||| ||||||| ||||||||  | |||||||||    
T  7949461 acctgagaccttgaggaggagcacactccgaggtcccaagccaataccgctaggccagcccaagtgggtt 7949530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 2606464 - 2606436
Alignment:
Q  42 caataccactaggccaatctaagtgggtt 70  Q
    |||||||||||||||||||||||||||||    
T  2606464 caataccactaggccaatctaagtgggtt 2606436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 8030214 - 8030282
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttca 72  Q
    ||||||||| ||||||||||||||   | || ||||| | ||||||||||| ||||| |||||||||||    
T  8030214 tgagaccttgaggaggagcacactcccaagtcccaagcctataccactagggcaatccaagtgggttca 8030282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36371539 - 36371470
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||| ||||||| ||||||||||||||   |||||||||| ||||||||||||||||| | |||||||||    
T  36371539 acctcagaccttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggtt 36371470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 33700780 - 33700847
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtggg 68  Q
    |||||||||||| ||||||||||||||   || ||||||| ||||||||||||||||| | |||||||    
T  33700780 acctgagaccttgaggaggagcacactcccagattccaagccaataccactaggccaacccaagtggg 33700847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 34460918 - 34460973
Alignment:
Q  3 ctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    |||||||||| ||||||| |||||||||||||  |||||||||||||||| |||||    
T  34460918 ctgagaccttcaggaggaacacacttttaggtctcaagtcaataccactaagccaa 34460973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 37400340 - 37400270
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttcaaa 74  Q
    |||||||||||||||||||||||||| ||||  |||| ||||||||| || |||| | |||| ||||||||    
T  37400340 tgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaacccaagttggttcaaa 37400270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4566617 - 4566548
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||| | ||||||||||||||   |||||||||| ||||| ||||||||||| | |||||||||    
T  4566617 acctgagaccctgaggaggagcacactcccaggttccaagccaatatcactaggccaacccaagtgggtt 4566548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9165202 - 9165271
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||||| || ||||||||||||||   |||| ||||| ||||||||||||||||| | |||||||||    
T  9165202 acctgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19528334 - 19528403
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| ||||||||||||||  ||| | ||||| ||||||||| ||||||| | |||||||||    
T  19528334 acctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 12993931 - 12993895
Alignment:
Q  34 ttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12993931 ttccaagtcaataccactaagccaatctaagtgggtt 12993895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 35700020 - 35699964
Alignment:
Q  2 cctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    ||||||||||| || || |||||||||  || |||||||||||||||||||||||||    
T  35700020 cctgagaccttgagcagaagcacacttccagtttccaagtcaataccactaggccaa 35699964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 35187978 - 35187931
Alignment:
Q  11 ttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    ||||||| ||||||||| | | ||||||||||||||||||||||||||    
T  35187978 ttaaggaagagcacactctcaagttccaagtcaataccactaggccaa 35187931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50920023 - 50919972
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccacta 52  Q
    |||||| |||||||||| ||||||||| | ||||| ||||||||||||||||    
T  50920023 acctgaaaccttaaggatgagcacactctcaggtttcaagtcaataccacta 50919972  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2220041 - 2219971
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttc 71  Q
    |||||||||||  ||||| |||||||||| |||||||||| ||||||||| ||  ||| | ||||||||||    
T  2220041 acctgagacctcgaggagaagcacactttcaggttccaagccaataccaccagaacaacccaagtgggttc 2219971  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 31794276 - 31794346
Alignment:
Q  6 agaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttcaaagg 76  Q
    ||||||| ||||||||||||||   | || ||||| ||||||||||||||||| | |||||||||| ||||    
T  31794276 agaccttgaggaggagcacactcccaagtcccaagccaataccactaggccaacccaagtgggttccaagg 31794346  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 36124899 - 36124853
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccac 50  Q
    |||||||| ||||||||||||||| | |||| |||||||||||||||    
T  36124899 tgagacctcaaggaggagcacactctcaggtcccaagtcaataccac 36124853  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 51814563 - 51814494
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||| |||||||||||||| | || |  |||||||||||||  ||||||| | |||||||||    
T  51814563 acctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggtt 51814494  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 52336781 - 52336838
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    |||||||| ||||||||||||||||||   || | ||||| |||||||||||||||||    
T  52336781 acctgagatcttaaggaggagcacactcccagatcccaagccaataccactaggccaa 52336838  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11063625 - 11063573
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactag 53  Q
    |||| ||||||| ||||||| |||||||| |||| ||||| ||||||||||||    
T  11063625 acctaagaccttgaggaggaacacactttcaggtcccaagccaataccactag 11063573  T

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Target: scaffold0517 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 7736 - 7806
Alignment:
Q  4 tgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggttcaaa 74  Q
    |||||||||||||||||||||||||| ||||  |||| ||||||||| || |||| | |||| ||||||||    
T  7736 tgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaacccaagttggttcaaa 7806  T

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Target: scaffold0180 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19969 - 20026
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    |||||||||||| |||||||||| |||   |||||||||| |||||||||||||||||    
T  19969 acctgagaccttgaggaggagcatactcccaggttccaagccaataccactaggccaa 20026  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34444872 - 34444815
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    ||||||||||||  ||||||||||||| | |||| ||||||||||||||| |||||||    
T  34444872 acctgagaccttggggaggagcacactctaaggtcccaagtcaataccaccaggccaa 34444815  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 12188317 - 12188379
Alignment:
Q  8 accttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    ||||| ||||||||||||||   |||| ||||| ||||||||||||||||| | |||||||||    
T  12188317 accttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 12188379  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6385931 - 6385882
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccac 50  Q
    ||||||||||||||||||||||||| |   |||| |||||||||||||||    
T  6385931 acctgagaccttaaggaggagcacagtcccaggtcccaagtcaataccac 6385882  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10338181 - 10338230
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccac 50  Q
    |||||||||||| ||||||||||||||  ||||| ||||| |||||||||    
T  10338181 acctgagaccttgaggaggagcacactcctaggtcccaagccaataccac 10338230  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 12234514 - 12234583
Alignment:
Q  1 acctgagaccttaaggaggagcacacttttaggttccaagtcaataccactaggccaatctaagtgggtt 70  Q
    |||||||||||  ||  ||||||||||   |||| ||||||||||||||| ||||||| |||||||||||    
T  12234514 acctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggccaacctaagtgggtt 12234583  T

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Target: scaffold0187 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 12442 - 12486
Alignment:
Q  14 aggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    ||||||| |||||||| ||||| |||||||||||||| |||||||    
T  12442 aggaggatcacactttcaggtttcaagtcaataccaccaggccaa 12486  T

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Target: scaffold0187; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 22770 - 22814
Alignment:
Q  14 aggaggagcacacttttaggttccaagtcaataccactaggccaa 58  Q
    ||||||| |||||||| ||||| |||||||||||||| |||||||    
T  22770 aggaggatcacactttcaggtttcaagtcaataccaccaggccaa 22814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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