View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17232_high_8 (Length: 395)
Name: NF17232_high_8
Description: NF17232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17232_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 32164877 - 32164488
Alignment:
| Q |
1 |
tcatcaatacgtttctttatattaagtaaactcttagagtcaagtcttcaagtcgagtatatgtaagctcaatgagttattattgactctcgagctagac |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32164877 |
tcattaatacgtttctttatattaagtaaactcttagagtcaagtcttcaagtcgagtatatgaaagctcaatgagttattattgactctcgagctagac |
32164778 |
T |
|
| Q |
101 |
aatcttgcttctaccacaaggccatttactaactctgctgatcttttggtcactttacctcctcggacccatcagctcctgccaagctcttcgattctta |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
32164777 |
aatcttgcttctactacaaggccatttactaactctgctgatcttttggtcactttacctcctcgaacccatcagcttctgccaagctcttcgaatctta |
32164678 |
T |
|
| Q |
201 |
tgcctgaacggttatctccagctttacaagactcaatttcagaacatgcacatctgcggtagggtgattataaaaccagtccagctgcttgttaagaagg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32164677 |
tgcctgaacggttatctccagctttacaagactcattttcagaacatgcacatctccggtagggtgattataaaaccagtccagctgcttgttaagaagg |
32164578 |
T |
|
| Q |
301 |
taatttttctttatgatcacacacgatcatgaaaaaagtagatatgatcaaactgccacattgacatgtgtagtattgatgatgtccatc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
32164577 |
taatttttctttatgatcacacacgatcatgagcaaagtagatatgatcaaactgccacattgacatgtgtagtattgttgacgtccatc |
32164488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University