View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17232_low_10 (Length: 275)
Name: NF17232_low_10
Description: NF17232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17232_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 35410269 - 35410029
Alignment:
| Q |
20 |
tttgacatggaaggtcttcctgccgatcttaaaagaaggtaaagaagatagtttccttcatcaaagttttctgtgcaatgagcttggttttacttgttct |
119 |
Q |
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| T |
35410269 |
tttgacatggaaggtcttcctgccgatcttaaaagaaggtaaagaagatagtttccttcatcaaagttttctgctcaatgagcttggttttacttgttct |
35410170 |
T |
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| Q |
120 |
ttcatttgttctttcactaagtgaagaagataagatctaactatttattctttcnnnnnnnncagaggtttggcggttccagatgccactcagccacatg |
219 |
Q |
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| T |
35410169 |
ttcatttgttctttcactaagtgaagaagataagatctaactatttattctttc-tttttttcagaggtttggcggttccagatgccactcggccacatg |
35410071 |
T |
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| Q |
220 |
gcattagactacttattgaagattatccttatgcggatgatg |
261 |
Q |
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| T |
35410070 |
gcattagactacttattgaagattatccttatgcggctgatg |
35410029 |
T |
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