View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17232_low_2 (Length: 752)
Name: NF17232_low_2
Description: NF17232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17232_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 70 - 393
Target Start/End: Original strand, 40707759 - 40708088
Alignment:
| Q |
70 |
aatatcatgaatagctgcttctttgtgacggaaagctaaaacagttgccaaccaaatcatcttgaaagctaaaacagtaaatt------cacccccaagc |
163 |
Q |
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| T |
40707759 |
aatatcatgaatagctgcttctttgttacggaaagctaaaacagttgccaaccaaatcattttgaaagctaaaacagtaaattttgatccacccccaagc |
40707858 |
T |
|
| Q |
164 |
cgcagaaatgacgtagatgcgacaagaggttcaatgaagaggcagcaggattaccaagccagccactaattaggacccaaatgttaccataaaaatcaca |
263 |
Q |
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| T |
40707859 |
cgcagaaatgacgcagatacgacaagaggatcggtgaagaggcggcaggaataccaagccagccactaattaggacccaaatgttaccataaaaatcaca |
40707958 |
T |
|
| Q |
264 |
cgcgacaaacagatcctctatatcttcagtgctcccataccttcttgtacacggttggtcattaacataaatcacttgacgtcgaactaagttatcttta |
363 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40707959 |
cgcgacaaacagatggtctatatcttcggtgctcccataccttcctgtacacggttggtcattaacataaatcacttgatgtcgaactaagttatcttta |
40708058 |
T |
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| Q |
364 |
gtaggaattcgattatgaagcaaccgtcac |
393 |
Q |
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| T |
40708059 |
gtaggaatccgattttgaagcaaccgtcac |
40708088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 433 - 735
Target Start/End: Original strand, 40708091 - 40708419
Alignment:
| Q |
433 |
agaataaagtgaagaacattattattactattattaaccaccactccattatca-------------acaactgataagcactactaactatgtaacggt |
519 |
Q |
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| T |
40708091 |
agaataaagtgaaggacattattattattattattaaccaccactccattatcaacaacctcgatcaacaactgataagcagtactaactatgtaacggt |
40708190 |
T |
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| Q |
520 |
tagatgaatgaggtcgccatatccacctatccgatcttggagatgatttttgaccaagacaaacaaaggtcattgtcttttctatgaatgatgtttgacc |
619 |
Q |
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| T |
40708191 |
tagatgaatgaggtcgccatatccacctatccggtcttggaaatgatttttgaccaagacaaacaaaggtcattgtcttttctatgaatgatgtttgacc |
40708290 |
T |
|
| Q |
620 |
caataaattttcactttaggttgtagtttaatttcaattatttggaaggta-------------ttttatggatcgtgtacctcttatacactctaattt |
706 |
Q |
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| T |
40708291 |
caataaattttcactttaggttgtagtttaatttcaattagttggaaggtatattatgtacttgttatatggatcgtgtacctcttatacactctaattt |
40708390 |
T |
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| Q |
707 |
actagtgaatgaaatttttataaccaatt |
735 |
Q |
| |
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| T |
40708391 |
actagtgaatgaaatttttataaccaatt |
40708419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 47164016 - 47164086
Alignment:
| Q |
12 |
caaaggaaacaaacttcgccttgaaccaccaaaaaactgtaagcttaacttgttcacaaatatcatgaata |
82 |
Q |
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| T |
47164016 |
caaaggaaacaaacttcgctttgaaccaccaaaaaactgtaagcttaatctgttcacaaatgtcatgaata |
47164086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 108 - 314
Target Start/End: Complemental strand, 24316768 - 24316556
Alignment:
| Q |
108 |
aaacagttgccaaccaaatcatcttgaaagctaaaacagtaaatt------cacccccaagccgcagaaatgacgtagatgcgacaagaggttcaatgaa |
201 |
Q |
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|||||| |||||| |||||||||||| ||||||||||||||||| ||||||||| | |||||||||||| | |||||||||||||||| |||| |
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| T |
24316768 |
aaacagctgccaattaaatcatcttgagagctaaaacagtaaatttcaatccacccccaaactgcagaaatgacgcatatgcgacaagaggttcggtgaa |
24316669 |
T |
|
| Q |
202 |
gaggcagcaggattaccaagccagccactaattaggacccaaatgttaccataaaaatcacacgcgacaaacagatcctctatatcttcagtgctcccat |
301 |
Q |
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| T |
24316668 |
gaggccgtagaaaaaccaagccagacacaaattagaacccaaatattaccataaaatgcacacaagacaaacagatgatctctatcttcagtgctcccac |
24316569 |
T |
|
| Q |
302 |
accttcttgtaca |
314 |
Q |
| |
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||| |||| |||| |
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| T |
24316568 |
accctcttataca |
24316556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 24316891 - 24316800
Alignment:
| Q |
12 |
caaaggaaacaaacttcgccttgaaccaccaaaaaactgtaagcttaacttgttcacaaatatcatgaatagctgcttctttgtgacggaaa |
103 |
Q |
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||||||||||||||||||| ||||||||||||||| ||| ||||||| |||||||| ||||||||||||| |||||| |||| ||||||| |
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| T |
24316891 |
caaaggaaacaaacttcgctttgaaccaccaaaaagttgtgagcttaatatgttcacagatatcatgaatagatgcttccttgttacggaaa |
24316800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 15134688 - 15134646
Alignment:
| Q |
12 |
caaaggaaacaaacttcgccttgaaccaccaaaaaactgtaag |
54 |
Q |
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| T |
15134688 |
caaaggaaacaaacttcaccttgaaccaccaaaaaagtgtaag |
15134646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 2591104 - 2591153
Alignment:
| Q |
20 |
acaaacttcgccttgaaccaccaaaaaactgtaagcttaacttgttcaca |
69 |
Q |
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|||||||||| |||||||||||||||| | |||||||||| |||||||| |
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| T |
2591104 |
acaaacttcgatttgaaccaccaaaaaattataagcttaacatgttcaca |
2591153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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