View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17232_low_3 (Length: 510)

Name: NF17232_low_3
Description: NF17232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17232_low_3
NF17232_low_3
[»] chr7 (3 HSPs)
chr7 (13-57)||(31209946-31209990)
chr7 (16-56)||(2609517-2609557)
chr7 (120-149)||(31206448-31206477)
[»] chr4 (2 HSPs)
chr4 (13-57)||(6671262-6671306)
chr4 (13-57)||(6667590-6667634)
[»] scaffold0933 (1 HSPs)
scaffold0933 (16-57)||(965-1006)
[»] chr1 (1 HSPs)
chr1 (253-294)||(17884634-17884675)
[»] chr8 (1 HSPs)
chr8 (13-57)||(1788770-1788814)
[»] chr2 (1 HSPs)
chr2 (13-57)||(1043561-1043605)


Alignment Details
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 31209990 - 31209946
Alignment:
Q  13 cacagataagtttactgttctctcttttaactatattttattgat 57  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  31209990 cacagataagtttattgttctctcttttatctatattttattgat 31209946  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 2609557 - 2609517
Alignment:
Q  16 agataagtttactgttctctcttttaactatattttattga 56  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  2609557 agataagtttattgttctctcttttacctatattttattga 2609517  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 31206477 - 31206448
Alignment:
Q  120 gtagataattcttatgactaattctacaac 149  Q
    ||||||||||||||||||||||||||||||    
T  31206477 gtagataattcttatgactaattctacaac 31206448  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 6671306 - 6671262
Alignment:
Q  13 cacagataagtttactgttctctcttttaactatattttattgat 57  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  6671306 cacagataagtttattgttctctcttttagctatattttattgat 6671262  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 6667634 - 6667590
Alignment:
Q  13 cacagataagtttactgttctctcttttaactatattttattgat 57  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||    
T  6667634 cacatataagtttattgttctctcttttagctatattttattgat 6667590  T

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Target: scaffold0933 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 965 - 1006
Alignment:
Q  16 agataagtttactgttctctcttttaactatattttattgat 57  Q
    ||||||||||| |||||||||||||| |||||||||||||||    
T  965 agataagtttattgttctctcttttacctatattttattgat 1006  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 17884634 - 17884675
Alignment:
Q  253 atccaagagttggaatgcttaccaaaatcagaagtagaattg 294  Q
    |||||| |||||||||||||||||||||||||| | ||||||    
T  17884634 atccaaaagttggaatgcttaccaaaatcagaattggaattg 17884675  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 1788814 - 1788770
Alignment:
Q  13 cacagataagtttactgttctctcttttaactatattttattgat 57  Q
    |||||||||||||| ||||||| ||||||  ||||||||||||||    
T  1788814 cacagataagtttattgttctcccttttagatatattttattgat 1788770  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 1043561 - 1043605
Alignment:
Q  13 cacagataagtttactgttctctcttttaactatattttattgat 57  Q
    |||||||||||||| |||| |||||| || |||||||||||||||    
T  1043561 cacagataagtttattgttttctcttatagctatattttattgat 1043605  T

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