View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17232_low_5 (Length: 465)
Name: NF17232_low_5
Description: NF17232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17232_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 102 - 303
Target Start/End: Complemental strand, 1917793 - 1917592
Alignment:
| Q |
102 |
ggctctacccaagagatatctaaaataaaccaccaccactgatatgacagagaaacaaaagtatatcacagcagcttcataagcgatgctccaacctgtc |
201 |
Q |
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| T |
1917793 |
ggctctacccaagagatatctaaaataaaccaccaccactgatatgacagagaaacaaaagtatatcacagcagcttcataagcgatgctccaacctgtc |
1917694 |
T |
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| Q |
202 |
ttcttcgataaaacgcaccgaaagctactcaaacccaatctgtctaaataacgatcaactgaactgccaaaaaatctcaggaaccacagtttagatcacg |
301 |
Q |
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| T |
1917693 |
ttcttcgataaaacgcaccgaaagctactcaaacccaatctgtctaaataacgatcagctgaactgccaaaaaatctcaggaaccacagtttagatcacg |
1917594 |
T |
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| Q |
302 |
ac |
303 |
Q |
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| T |
1917593 |
ac |
1917592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 369 - 449
Target Start/End: Complemental strand, 1917526 - 1917446
Alignment:
| Q |
369 |
gagacggacacctatacttctactcatgcagacaaggatcagaaacaccaaaacaacaatgctgaaagttcaagtcttcat |
449 |
Q |
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| T |
1917526 |
gagacggacacctgtacttctactcatacagacaaggatcagaaacaccaagacaacaatgctgaaagttcaagtcttcat |
1917446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 144 - 300
Target Start/End: Original strand, 29120805 - 29120963
Alignment:
| Q |
144 |
tatgacagagaaacaaaag-tatatcacagcagcttcataagcgatgctccaacctgtcttcttcgataaaacgcaccgaaagctactcaaacccaatct |
242 |
Q |
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| T |
29120805 |
tatgacagagaaacaaaaaatatatcacaacagctccataagcgatgctctgacctgtcttcttcgataaaacacaccaaaagctactcaaacccaatct |
29120904 |
T |
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| Q |
243 |
gtctaaataacgatcaactgaactgccaa-aaaatctcaggaaccacagtttagatcac |
300 |
Q |
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| T |
29120905 |
gactaaaaaacgaacagctgaactgcaaataaaatctcaaaaaccacagtttaaatcac |
29120963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 449
Target Start/End: Original strand, 29121038 - 29121113
Alignment:
| Q |
374 |
ggacacctatacttctactcatgcagacaaggatcagaaacaccaaaacaacaatgctgaaagttcaagtcttcat |
449 |
Q |
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| T |
29121038 |
ggacacctgtacttctgctcaaacagacaaggatcagaaacaccaagacaacaatgctgaaaattcaagtcttcat |
29121113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 44516069 - 44515990
Alignment:
| Q |
123 |
aaaataaaccaccaccactgatatgacagagaaac--aaaagtatatcacagcagcttcataagcgatgctccaacctgt |
200 |
Q |
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| T |
44516069 |
aaaataaaccaccaccacaaatatgacagacaaacaaaaaaatatatcacaatggctccataagcgatgctccgacctgt |
44515990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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