View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17232_low_7 (Length: 443)
Name: NF17232_low_7
Description: NF17232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17232_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 6250117 - 6249705
Alignment:
| Q |
19 |
aacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccccatgttgatggaaacaatttgannnnnnnngatagccctgttaaccaaaca |
118 |
Q |
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| T |
6250117 |
aacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccccatgttgatggaaacaatttgatttttt--gatagccctgttaaccaaaca |
6250020 |
T |
|
| Q |
119 |
accaatgaaactgaagttaaaccaatttcctatcataccacatattaatttgagattgtatgtaatannnnnnnnnnncttgtgaacaaaccaaaatata |
218 |
Q |
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| T |
6250019 |
accaatgaaactgaagttaaaccaatttcctatcataccacatattaatttgagattgtatgtaatattattgtttttcttgtgaacaaaccaaaatata |
6249920 |
T |
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| Q |
219 |
taatgatataaataaacgcacaagatgtaacactattattagaatgtgtacttccctaaaaagacctaaacatgtttatgttgttaaaaattacttgtat |
318 |
Q |
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| T |
6249919 |
taatgatataaataaacgcacaagatgtaacactattattagaatgtgtacttccctaaaaagacctaaacatgtttatgttgttaaaaattacttgtat |
6249820 |
T |
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| Q |
319 |
aaagtatnnnnnnnntgtgaaatcacgtcatgctaatagaagccgcaattgtgtatcctatcacaattccaaatagattgaggtactgaaatattccaca |
418 |
Q |
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| T |
6249819 |
aaagtat-aaaaaaatgtgaactcacgtcatgctaatagaagccgcaattgtgtatcctatcacaattccaaatagattgaggtactgaaatattccac- |
6249722 |
T |
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| Q |
419 |
aaaacgtaacctttgct |
435 |
Q |
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| T |
6249721 |
aaaacgtaacctttgct |
6249705 |
T |
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Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 39428103 - 39428173
Alignment:
| Q |
19 |
aacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccccatgttgatggaaacaatttga |
89 |
Q |
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| T |
39428103 |
aacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccccatgttgatggaaacaatttga |
39428173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 39428824 - 39428909
Alignment:
| Q |
336 |
tgaaatcacgtcatgctaatagaagccgcaattgtgtatcctatcacaattccaaatagattgaggtactgaaatattccacaaaa |
421 |
Q |
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| T |
39428824 |
tgaactcacgtcatgctaatagatgccgcaattgtgtatcctataacaattccaaatagatttaggtactggaatatcccacaaaa |
39428909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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