View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17233_high_1 (Length: 643)
Name: NF17233_high_1
Description: NF17233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17233_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 3e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 421 - 637
Target Start/End: Original strand, 36958466 - 36958679
Alignment:
| Q |
421 |
agctttagctgattagcatagtcttcaactcgtcatcattaattcaacatcttaattgcagatatatttcccaacttttggggtaatacaatataaaatt |
520 |
Q |
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| T |
36958466 |
agctttagctgattagcatagtcttcaactcgtcatcatcaattcaacatcttaatttcagatatatttcccaactttgggggtaatacaatataaaatt |
36958565 |
T |
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| Q |
521 |
ttagagaataaaaatagaaaaagggagtgcataaattgcctgtttgttcccatcattgcacatttccactgtgcttaaattttagaggatgaaatgttgt |
620 |
Q |
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| T |
36958566 |
ttagagaataaaaatagaaaaagggagtgcataaattgcctgtttgttcccatcattgcatatttccactgggctcaaattttagaggatgaaa---tgt |
36958662 |
T |
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| Q |
621 |
tattcatcttcatctca |
637 |
Q |
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| T |
36958663 |
tattcatcttcatctca |
36958679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 36957604 - 36957788
Alignment:
| Q |
17 |
ctacctatctttttcctttgtatttgggatctaacttgcttgaggattgtacaccatttacaattatgattggagttagatttcctatgccctgtctact |
116 |
Q |
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| T |
36957604 |
ctacctatctttttcctttgtatttgggacctaacttgcttgaggattgtacaccatttacaattataattggagttagatttcctatgccctgtctact |
36957703 |
T |
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| Q |
117 |
aattgaggagttttcttttacattgaaagaatatcaacactagttgacatgcatggtgctaagattctaaaattctatgctctcataatt |
206 |
Q |
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| T |
36957704 |
agttgaggagtttt-ttttacattgaaagaatatcaacactggttga----catggtgctaagattctaaaattctatgctctcataatt |
36957788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 238 - 423
Target Start/End: Original strand, 36957783 - 36957985
Alignment:
| Q |
238 |
ataattacaacagtaggtagcttatgcagctcttacaatgtagaggctactgtaactgaattgcgatgtccaaaaaact----------------aacag |
321 |
Q |
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| T |
36957783 |
ataattacaacagtagctagcatatgcagctcttacaatgtagaggctactgtaactgaattgcgatgtccaaaatactgactttaacataatctaacag |
36957882 |
T |
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| Q |
322 |
cttattgcctagttagcactagattaactagcttggaatgatctgg-aatattctagaatgatctagattctgcatatacattgacacatggacatatga |
420 |
Q |
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| T |
36957883 |
cttattgcctagttagcactagattaactagcttggaatgatctgggaatattctagaatgatctagattctgcatatacattgacacatgaacatatga |
36957982 |
T |
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| Q |
421 |
agc |
423 |
Q |
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||| |
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| T |
36957983 |
agc |
36957985 |
T |
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