View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17233_low_10 (Length: 205)

Name: NF17233_low_10
Description: NF17233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17233_low_10
NF17233_low_10
[»] chr3 (26 HSPs)
chr3 (16-133)||(7334165-7334282)
chr3 (17-129)||(2659079-2659191)
chr3 (17-129)||(7324358-7324470)
chr3 (16-122)||(2476653-2476759)
chr3 (66-129)||(2644338-2644401)
chr3 (16-117)||(9561911-9562012)
chr3 (66-129)||(4142110-4142173)
chr3 (74-130)||(746367-746423)
chr3 (82-129)||(989408-989455)
chr3 (59-129)||(2456261-2456331)
chr3 (79-129)||(3754612-3754662)
chr3 (83-129)||(4157937-4157983)
chr3 (56-129)||(2492094-2492167)
chr3 (17-110)||(2635752-2635845)
chr3 (76-129)||(9565815-9565868)
chr3 (154-195)||(9595167-9595208)
chr3 (81-129)||(44001607-44001655)
chr3 (78-129)||(2502160-2502211)
chr3 (79-129)||(2686301-2686351)
chr3 (59-129)||(7942497-7942567)
chr3 (79-129)||(9587174-9587224)
chr3 (87-129)||(13498236-13498278)
chr3 (85-129)||(2442051-2442095)
chr3 (155-195)||(2659669-2659709)
chr3 (85-129)||(2696727-2696771)
chr3 (89-133)||(7442976-7443020)
[»] scaffold0044 (1 HSPs)
scaffold0044 (59-129)||(89155-89225)
[»] chr5 (3 HSPs)
chr5 (66-129)||(11081825-11081888)
chr5 (82-117)||(23766854-23766889)
chr5 (82-117)||(23816702-23816737)
[»] chr4 (3 HSPs)
chr4 (91-131)||(11032920-11032960)
chr4 (61-133)||(20016156-20016228)
chr4 (66-131)||(20019748-20019813)
[»] chr7 (1 HSPs)
chr7 (91-129)||(1421170-1421208)
[»] chr1 (2 HSPs)
chr1 (59-117)||(51381424-51381482)
chr1 (92-129)||(24629213-24629250)
[»] chr6 (1 HSPs)
chr6 (81-117)||(24417477-24417513)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 7334165 - 7334282
Alignment:
Q  16 cagttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttattt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7334165 cagttggtcatcctctgaaatatataaaagagaatcggcttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttattt 7334264  T
Q  116 ccgtagtccttcatgatc 133  Q
    ||||||||||||||||||    
T  7334265 ccgtagtccttcatgatc 7334282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 2659079 - 2659191
Alignment:
Q  17 agttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttc 116  Q
    |||||||||||||||||||||||||||     ||||| ||||||| |  |||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  2659079 agttggtcatcctctgaaatatataaagctctatcggcttctaaatcctgatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttc 2659178  T
Q  117 cgtagtccttcat 129  Q
    | || ||||||||    
T  2659179 catactccttcat 2659191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 7324358 - 7324470
Alignment:
Q  17 agttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttc 116  Q
    |||||||||||||| ||||| ||||||  |   | || ||||||||| ||||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  7324358 agttggtcatcctcagaaatgtataaagcatcgtaggcttctaaaccgcgatcttgcatgttaggaacactatacaatttagtccaagactctttatttc 7324457  T
Q  117 cgtagtccttcat 129  Q
    |||||||||||||    
T  7324458 cgtagtccttcat 7324470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 2476759 - 2476653
Alignment:
Q  16 cagttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttattt 115  Q
    ||||||||||||||| ||||| ||||||  |   | || ||||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  2476759 cagttggtcatcctcagaaatgtataaagcattgtaggcttctaaaccccgatcttgcatgttaggaacagtgtacaatttagtccaagactctttattt 2476660  T
Q  116 ccgtagt 122  Q
    || ||||    
T  2476659 ccatagt 2476653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 2644338 - 2644401
Alignment:
Q  66 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||    
T  2644338 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcat 2644401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 9561911 - 9562012
Alignment:
Q  16 cagttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttattt 115  Q
    ||||||||||||||| ||| ||||||||| || ||  | |||||||||  |||||| || |||||||| | |||| ||||||||||||||||||| ||||    
T  9561911 cagttggtcatcctcagaactatataaaacagtataagcttctaaaccgtgatcttgcatgttaggaacactgtataatttagtccaagactcttgattt 9562010  T
Q  116 cc 117  Q
    ||    
T  9562011 cc 9562012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 4142110 - 4142173
Alignment:
Q  66 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    ||||| ||| || |||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  4142110 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcat 4142173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 746367 - 746423
Alignment:
Q  74 aggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatg 130  Q
    |||||||||| | |||||||||||||||||||||||| |||||| || |||||||||    
T  746367 aggttaggaacaatgtacaatttagtccaagactcttgatttccatactccttcatg 746423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 989455 - 989408
Alignment:
Q  82 aatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    ||||||| ||||||||||||||||||||||||||||||| || |||||    
T  989455 aatagtgaacaatttagtccaagactctttatttccgtactctttcat 989408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 2456331 - 2456261
Alignment:
Q  59 aaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||||||||| | ||| || |||||||  |||||||||||||||||| ||||||||||| || ||||||||    
T  2456331 aaaccacgatatctcatgtaaggaatatggtacaatttagtccaagagtctttatttccatattccttcat 2456261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 3754662 - 3754612
Alignment:
Q  79 aggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||||||||  |||||||||||||||||||||||||||| || ||||||||    
T  3754662 aggaatagtaaacaatttagtccaagactctttatttccatattccttcat 3754612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 4157937 - 4157983
Alignment:
Q  83 atagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||    
T  4157937 atagtgaacaatttagtccaagactctttatttccatattccttcat 4157983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 2492167 - 2492094
Alignment:
Q  56 tctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||||||| ||||||| || |||||||| | | |||||||||||||||||||||  |||||| || ||||||||    
T  2492167 tctaaaccccgatcttgcatgttaggaacactatacaatttagtccaagactctcgatttccatactccttcat 2492094  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 2635845 - 2635752
Alignment:
Q  17 agttggtcatcctctgaaatatataaaagagaatcgggttctaaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctt 110  Q
    |||||||||||||| ||||||||||||     || |  ||||||||| |||| || || |||||||| | ||||||||||||||||||||||||    
T  2635845 agttggtcatcctcagaaatatataaagctttatagacttctaaaccccgatgttgcatgttaggaacactgtacaatttagtccaagactctt 2635752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 9565815 - 9565868
Alignment:
Q  76 gttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||||||| | |||||||||||||||||||||||| || |||||| ||||||||    
T  9565815 gttaggaacaatgtacaatttagtccaagactcttgatctccgtactccttcat 9565868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 9595167 - 9595208
Alignment:
Q  154 atccatttgtgagagtaataggagtgtaaagttgtgtctgtg 195  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  9595167 atccatttgtgagagtattaggagggtaaagttgtgtctgtg 9595208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 44001655 - 44001607
Alignment:
Q  81 gaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||||||||||| ||||||||||||||||||| |||| || ||||||||    
T  44001655 gaatagtgtacagtttagtccaagactctttaattccatattccttcat 44001607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 2502211 - 2502160
Alignment:
Q  78 taggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    ||||||||||||||| |||||||||| |||| |||||||| || ||||||||    
T  2502211 taggaatagtgtacagtttagtccaaaactccttatttccatactccttcat 2502160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 2686301 - 2686351
Alignment:
Q  79 aggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||||||||| |||||||| ||||||||||||| ||||| || ||||||||    
T  2686301 aggaatagtgaacaatttattccaagactctttttttccatattccttcat 2686351  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 7942567 - 7942497
Alignment:
Q  59 aaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    ||||| ||||||| || || ||||| | ||||||||||| |||||||||||||||| || || ||||||||    
T  7942567 aaacctcgatcttccatgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcat 7942497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 9587174 - 9587224
Alignment:
Q  79 aggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    ||||||| |||||||||| ||||||| |||||||||||| || ||||||||    
T  9587174 aggaatattgtacaattttgtccaaggctctttatttccatattccttcat 9587224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 13498278 - 13498236
Alignment:
Q  87 tgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||| |||||||||||||||||||||||||| || ||||||||    
T  13498278 tgtataatttagtccaagactctttatttccatattccttcat 13498236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 2442095 - 2442051
Alignment:
Q  85 agtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||| |||||||||||||||| ||||||||||| || ||||||||    
T  2442095 agtgaacaatttagtccaagaatctttatttccatactccttcat 2442051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 2659669 - 2659709
Alignment:
Q  155 tccatttgtgagagtaataggagtgtaaagttgtgtctgtg 195  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  2659669 tccatttgtgagagtattaggaatgtaaagttgtgtttgtg 2659709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 2696727 - 2696771
Alignment:
Q  85 agtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||| |||||||| ||||||||||||||||||| || ||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcat 2696771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 7442976 - 7443020
Alignment:
Q  89 tacaatttagtccaagactctttatttccgtagtccttcatgatc 133  Q
    ||||| |||||||||||||||| |||||| || ||||||||||||    
T  7442976 tacaacttagtccaagactcttgatttccatactccttcatgatc 7443020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 89225 - 89155
Alignment:
Q  59 aaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    ||||||||||||| || || ||||| | ||||||||||||||||||||||||||||||| || ||||||||    
T  89225 aaaccacgatcttccatgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcat 89155  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 11081888 - 11081825
Alignment:
Q  66 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcat 129  Q
    ||||| ||| || |||||||||  |||||||||||||||||||||||||||| || ||||||||    
T  11081888 gatctctcatgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcat 11081825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 23766854 - 23766889
Alignment:
Q  82 aatagtgtacaatttagtccaagactctttatttcc 117  Q
    ||||||| ||||||||||||||||||||||||||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttcc 23766889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 23816702 - 23816737
Alignment:
Q  82 aatagtgtacaatttagtccaagactctttatttcc 117  Q
    ||||||| ||||||||||||||||||||||||||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttcc 23816737  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 11032960 - 11032920
Alignment:
Q  91 caatttagtccaagactctttatttccgtagtccttcatga 131  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  11032960 caatttaatccaagactctttatttccgtattccttcatga 11032920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 20016156 - 20016228
Alignment:
Q  61 accacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatc 133  Q
    |||| |||||| || ||||| || |||| ||||||||||||||||||||| | |||| || ||||||||||||    
T  20016156 accatgatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgatc 20016228  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 20019748 - 20019813
Alignment:
Q  66 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatga 131  Q
    |||||| || ||||| || |||| ||||||||||||||||||||| | |||| || ||||||||||    
T  20019748 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatga 20019813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 1421170 - 1421208
Alignment:
Q  91 caatttagtccaagactctttatttccgtagtccttcat 129  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcat 1421208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 51381424 - 51381482
Alignment:
Q  59 aaaccacgatctttcaggttaggaatagtgtacaatttagtccaagactctttatttcc 117  Q
    ||||||||| ||| || || ||||||| || ||||||||||||||||||||| ||||||    
T  51381424 aaaccacgaccttccatgtaaggaatactgaacaatttagtccaagactcttcatttcc 51381482  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 24629213 - 24629250
Alignment:
Q  92 aatttagtccaagactctttatttccgtagtccttcat 129  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcat 24629250  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 24417477 - 24417513
Alignment:
Q  81 gaatagtgtacaatttagtccaagactctttatttcc 117  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  24417477 gaatactgtacaatttagtccaagattctttatttcc 24417513  T

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