View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17233_low_2 (Length: 603)
Name: NF17233_low_2
Description: NF17233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17233_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 11 - 587
Target Start/End: Complemental strand, 36511840 - 36511263
Alignment:
| Q |
11 |
cagagagtgtgccattaaaatctaatacactccaccatggtaataattttcattccctatatgtttaannnnnnnnn-cttcttcagatttataaattgt |
109 |
Q |
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| T |
36511840 |
cagagagtgtgccattaaaatctaatacactccaccatggtaataattttcattctctatatgtttaattttttttttcttcttcagatttataaattgt |
36511741 |
T |
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| Q |
110 |
catgaattttctcttgttgctacactactcatattccatttccgtatcctttgcaggattctacctgctatgaatatggctgtgttggaaataaacatgt |
209 |
Q |
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| T |
36511740 |
catgaattttctcttgttgctacactactcatattccatttccgtatcctttgcaggattctacctgctatgaatatggttgtgttggaaataaacatgt |
36511641 |
T |
|
| Q |
210 |
gacagacttataggtttattaattaaatatgacttcatgtagctggtatttatgtcattggatatcccacccttttatatgaacttatctatctatgtct |
309 |
Q |
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| T |
36511640 |
gacagacttataggtttattaattaaatatgacttcatgtagctggtatttatgtcattggatatcccacccttttatatgaacttatctatctatgtct |
36511541 |
T |
|
| Q |
310 |
ttaataatttctctcttaatttagatatagtccaatttttatcttatcctggtttatactttaactgctagagtgaataannnnnnngtccattacatgg |
409 |
Q |
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| T |
36511540 |
ttaataatttctctcttaatttagatatagtccaatttttatcttatcctggtttatactttaactgctagagtgaataatttttttgtccattacatgg |
36511441 |
T |
|
| Q |
410 |
tatttatattttgaaatcacatgttgacatgcacaagttttggtgatttgagaaattttatttaaatagtaagtataaagagatactccaaattctaacc |
509 |
Q |
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| T |
36511440 |
tatttatattttgaaatcacatgttgacatgcacaagttttggtgatttgagaaattttatttaaatagtaagtataaagagatactccaaattctaacc |
36511341 |
T |
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| Q |
510 |
tttgattttgatattaattaatgggtgtgatcaattgctattagtccttgttgttaggttattgtactccttcttaag |
587 |
Q |
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| T |
36511340 |
tttgattttgatattaattaatgggtgtgatcaattgctattagtccttgttgttaggttattgtactccttcttaag |
36511263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 397 - 473
Target Start/End: Original strand, 36808602 - 36808678
Alignment:
| Q |
397 |
gtccattacatggtatttatattttgaaatcacatgttgacatgcacaagttttggtgatttgagaaattttattta |
473 |
Q |
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| T |
36808602 |
gtccattacatggtatttatattttgaaatcatatactggcttgcacaagttttggtgatttgagaaattttattta |
36808678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 38212373 - 38212413
Alignment:
| Q |
17 |
gtgtgccattaaaatctaatacactccaccatggtaataat |
57 |
Q |
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| T |
38212373 |
gtgtgccattaaaatctagtacactccaccattgtaataat |
38212413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 528
Target Start/End: Complemental strand, 55203734 - 55203685
Alignment:
| Q |
479 |
taagtataaagagatactccaaattctaacctttgattttgatattaatt |
528 |
Q |
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| T |
55203734 |
taagtataaagagttactccaaattttaaccattaattgtgatattaatt |
55203685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 474 - 557
Target Start/End: Complemental strand, 39297472 - 39297389
Alignment:
| Q |
474 |
aatagtaagtataaagagatactccaaattctaacctttgattttgatattaattaatgggtgtgatcaattgctattagtcct |
557 |
Q |
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| T |
39297472 |
aatagtaagtataaagaattattccaaatcctaaccattgattttaatattaattaatgggtgtgatgaattgctattaatcct |
39297389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 540
Target Start/End: Complemental strand, 5390196 - 5390133
Alignment:
| Q |
477 |
agtaagtataaagagatactccaaattctaacctttgattttgatattaattaatgggtgtgat |
540 |
Q |
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| T |
5390196 |
agtaagtctaaagacttactccaaatcataaccattgattttgatattaattaatggttgtgat |
5390133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 532
Target Start/End: Original strand, 39296767 - 39296822
Alignment:
| Q |
477 |
agtaagtataaagagatactccaaattctaacctttgattttgatattaattaatg |
532 |
Q |
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| T |
39296767 |
agtaagtataaagagttactccaaatcctaacgattgatttaaatattaattaatg |
39296822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 535
Target Start/End: Original strand, 3077278 - 3077333
Alignment:
| Q |
480 |
aagtataaagagatactccaaattctaacctttgattttgatattaattaatgggt |
535 |
Q |
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| T |
3077278 |
aagtataaagagttactccaaatcataaccattgattttaatattaattaatgggt |
3077333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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