View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17233_low_4 (Length: 269)
Name: NF17233_low_4
Description: NF17233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17233_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 47334697 - 47334953
Alignment:
| Q |
11 |
cacagacaaaattgtatgatttaataaaacaaggattgcatacggtgtaagcaatcataaacccacaacaacaatt---------------accttcttt |
95 |
Q |
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| T |
47334697 |
cacaaacaaaattgtatgatttaatgaaacaaggattgcatacggtgtaagcaatcataaacctacaacaacaattactaactgtaaaattaccttcttt |
47334796 |
T |
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| Q |
96 |
acaccacgaatcttcttagctctattctttctctccttcatttgcttccttgacttctctacttttgtgtcaaggccattctgaaatagatttatatttt |
195 |
Q |
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| T |
47334797 |
acaccacgaatcttcttagctctattctttctctccttcatttgcttccttgacttctctacttttgtgtcaaggccattctgaaatagatttatatttt |
47334896 |
T |
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| Q |
196 |
ggttcagtccacaaaacaatgtaatcacggatattaatacaagcttattgaagggaa |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47334897 |
ggttcagtccacaaaacaatgtaatcacggatattaatacaagcttattgaagggaa |
47334953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 36223574 - 36223474
Alignment:
| Q |
85 |
ttaccttctttacaccacgaatcttcttagctctattctttctctccttcatttgcttccttgacttctctacttttgtgtcaaggccattctgaaatag |
184 |
Q |
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||||||||||||| ||||| |||||||| || | |||||||| ||||||||||||||||||||||| || || || || ||||| |||||||| ||||| |
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| T |
36223574 |
ttaccttctttactccacggatcttctttgcccggttctttctttccttcatttgcttccttgacttttcaaccttagtatcaagtccattctgcaatag |
36223475 |
T |
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| Q |
185 |
a |
185 |
Q |
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| T |
36223474 |
a |
36223474 |
T |
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