View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17233_low_6 (Length: 239)
Name: NF17233_low_6
Description: NF17233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17233_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 30749076 - 30748841
Alignment:
| Q |
4 |
accaccaccaccaaaagccatatcataagaatgcatagcatcttgttccacactctcagaattcccacctatataatacaattgattgtgatcatatttt |
103 |
Q |
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| T |
30749076 |
accaccgccaccaaaagccatatcataagaatgcataacatcttgttccacactctcagaattcccaccaatataatacaattgattgtgatcatatttt |
30748977 |
T |
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| Q |
104 |
cccaacacagtaactaaattctcggggaaaaacaccgtatcatcatctcccattacaaaccacctaacatttggcaaaccaagtctaaagctttcgtaaa |
203 |
Q |
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| T |
30748976 |
cccaacacagtaactaaattctcggggaaaaacaccgtatcatcatctcccattacaaaccacctaacatttggcaaaccaagtctaaagctttcgtaaa |
30748877 |
T |
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| Q |
204 |
ctatccgcgatatccgaactgcggacgcagagtgca |
239 |
Q |
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| T |
30748876 |
ctatccgcgatatccgaactgcggacgcagagtgca |
30748841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 22960043 - 22960175
Alignment:
| Q |
42 |
catcttgttccacactctcagaattcccacctatataatacaattgattgtgatcatattttcccaacacagtaactaaattctcggggaaaaacaccgt |
141 |
Q |
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| T |
22960043 |
catcttgttcaacactctctgaatttccaccaatatagtacatttgattatgatcatatttcgacaacaccgtaacaaggttgtcggggaagaagacggt |
22960142 |
T |
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| Q |
142 |
atcatcatctcccattacaaaccacctaacatt |
174 |
Q |
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| T |
22960143 |
atcatcatcacccattacaaaccacctcacatt |
22960175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 175
Target Start/End: Complemental strand, 11092047 - 11091927
Alignment:
| Q |
55 |
actctcagaattcccacctatataatacaattgattgtgatcatattttcccaacacagtaactaaattctcggggaaaaacaccgtatcatcatctccc |
154 |
Q |
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| T |
11092047 |
actctctgaattactaccaatgtaataaaattgattatgatcatatttcttcaaaacattaaccaaattctcagcaacaaaaaatgtatcatcatcaccc |
11091948 |
T |
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| Q |
155 |
attacaaaccacctaacattt |
175 |
Q |
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| T |
11091947 |
atcacaaaccacctcacattt |
11091927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 2619256 - 2619216
Alignment:
| Q |
133 |
aaacaccgtatcatcatctcccattacaaaccacctaacat |
173 |
Q |
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| T |
2619256 |
aaacaccgtgtcgtcatctcccattacaaaccacctcacat |
2619216 |
T |
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