View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17233_low_7 (Length: 236)
Name: NF17233_low_7
Description: NF17233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17233_low_7 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 36134622 - 36134848
Alignment:
| Q |
10 |
attatactgtcataacaacacattatgccacctgatgtaaatatctctaatttacttgtttatatataagaaaaagactcgatgaaaatcatgacattcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36134622 |
attatactgtcataacaacacattatgccacctgatgtacatatctttaatttacttgtttatatataagaaaaagactcgatgaaaatcatgacattcc |
36134721 |
T |
|
| Q |
110 |
atcacaaatcaatatttgttacaatgcacgttcatatatagtttgcaatgttttgttttatacatgcatgatttcagtttaatatattgatggtttgagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||| |||||||| |
|
|
| T |
36134722 |
atcacaaatcaatatttgttacaatgcatgttcatatatagtttgcaatgttttgtgttatacatgcatgattccagttaaatatatcgatcgtttgagt |
36134821 |
T |
|
| Q |
210 |
gatctgaatattgttagcgatttctaa |
236 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
36134822 |
gatctgaatattgttagcgatttctaa |
36134848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University