View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17234_high_11 (Length: 316)
Name: NF17234_high_11
Description: NF17234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17234_high_11 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 6987964 - 6987671
Alignment:
| Q |
1 |
ggattactttggggactgctgagggtcttcactatctgcatgagggatgtcaaagaaggattattcacaaagatatcaaagcttctaatatacttctctc |
100 |
Q |
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| T |
6987964 |
ggattactttggggactgctgagggtcttcactatctgcatgagggatgtcaaagaaggattattcacaaagatatcaaagcttctaatatacttctctc |
6987865 |
T |
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| Q |
101 |
agaggactttgagcctcaggtccttcttatgactcacaaatctgattatttatgaaacatgcatttttcagcaaatattataattcttatattctaaatc |
200 |
Q |
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| T |
6987864 |
agaggactttgagcctcaggtccttcttatgactcacaaatctgattctttatgaaacatgcatttttcagcaaatattataattcttatattctaaatc |
6987765 |
T |
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| Q |
201 |
aacaacaatttgtgcgtttaccaaaatcacattaacatgattttgttgaagtttcaaaatgtaacttttgccaaaatcacgaaggacacctgat |
294 |
Q |
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| T |
6987764 |
aacaacaatttgtgcgtttaccaaaatcacattaacatgattttgttgaagtttcaaaatgtaactttcgccaaaatcacgaaggacacctgat |
6987671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 43598558 - 43598604
Alignment:
| Q |
235 |
acatgattttgttgaagtttcaaaatgtaacttttgccaaaatcacg |
281 |
Q |
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| T |
43598558 |
acatgattttgttgaagttccaaaatataatttttgtcaaaatcacg |
43598604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 16021 - 16069
Alignment:
| Q |
234 |
aacatgattttgttgaagtttcaaaatgtaacttttgccaaaatcacga |
282 |
Q |
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| T |
16021 |
aacatgattttgttgaagttccaaaatgtagcttttgccaaaatcacga |
16069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 40114226 - 40114138
Alignment:
| Q |
33 |
tatctgcatgagggatgtcaaagaaggattattcacaaagatatcaaagcttctaatatacttctctcagaggactttgagcctcaggt |
121 |
Q |
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| T |
40114226 |
tatcttcatgagggttgtcaaaaaagatttatccacagagatataaaagctgcaaatatcttgctcacagaggactttgagcctcaggt |
40114138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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