View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17234_high_2 (Length: 372)

Name: NF17234_high_2
Description: NF17234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17234_high_2
NF17234_high_2
[»] chr1 (4 HSPs)
chr1 (30-372)||(11780124-11780467)
chr1 (188-360)||(10424593-10424765)
chr1 (190-360)||(1624838-1625008)
chr1 (277-336)||(30731478-30731537)
[»] chr7 (1 HSPs)
chr7 (30-372)||(17158540-17158886)
[»] chr6 (4 HSPs)
chr6 (37-372)||(14977470-14977808)
chr6 (74-245)||(11776308-11776482)
chr6 (189-245)||(9352421-9352477)
chr6 (197-245)||(24353638-24353686)
[»] chr2 (1 HSPs)
chr2 (57-372)||(12101751-12102064)
[»] chr5 (4 HSPs)
chr5 (74-360)||(5781902-5782191)
chr5 (74-360)||(19069420-19069709)
chr5 (251-348)||(17763963-17764060)
chr5 (188-245)||(11724701-11724758)
[»] chr3 (6 HSPs)
chr3 (188-355)||(16311632-16311799)
chr3 (188-355)||(18488416-18488583)
chr3 (188-355)||(18492626-18492793)
chr3 (177-340)||(19829018-19829181)
chr3 (188-326)||(16314023-16314161)
chr3 (188-326)||(18495017-18495155)
[»] chr8 (1 HSPs)
chr8 (188-344)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 30 - 372
Target Start/End: Complemental strand, 11780467 - 11780124
Alignment:
Q  30 cagttgttacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctag 129  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  11780467 cagttgttacttctcatatgacggtccctatgcccaggacatcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctag 11780368  T
Q  130 tgaggagctgctactagctacgccagtgtttgaaattgtttcccgg-ttgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcg 228  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  11780367 tgaggagctgctactagctacgccagtgtttgaaattgtttccccgattgcatgatgaaatgcattctgagagagtgaagcagtcgcatccgacatcgcg 11780268  T
Q  229 ggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccg 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11780267 ggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggagctggtggagagtccg 11780168  T
Q  329 aagggtgcccatgagcatgtaccacattcatcaattgttgagca 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11780167 aagggtgcccatgagcatgtaccacattcatcaattgttgagca 11780124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 188 - 360
Target Start/End: Complemental strand, 10424765 - 10424593
Alignment:
Q  188 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 287  Q
    |||||||||||||||||||| || | ||||| ||||||||||||||  ||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  10424765 gtgcattctgagagagtggaacaattgcatctgacatcgcgggaggtattggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 10424666  T
Q  288 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 360  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||||||||||||||    
T  10424665 aatataatcgttcgcgcccacgggagctggtggagagtcctaagggttcctacgagcgtgtaccacattcatc 10424593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 360
Target Start/End: Complemental strand, 1625008 - 1624838
Alignment:
Q  190 gcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaa 289  Q
    ||||| ||||||||| || |||| ||||| |||||||||||||| ||||| |||||     || || ||||| |||   ||||| |  ||||||||||||    
T  1625008 gcattttgagagagtagaacagttgcatctgacatcgcgggaggtgttggggaaccccacggtggatgatgtcactgttacgctttatgatgatgtggaa 1624909  T
Q  290 cataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 360  Q
    || |||  |||| |||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||||||    
T  1624908 cacaatagttcgagcccgcgggagctggtcgagagtcccaagggttcccacgagcgtgtaccacattcatc 1624838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 30731478 - 30731537
Alignment:
Q  277 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgc 336  Q
    ||||| |||||||||| |||||  | |||||||||| |||||||||||||| ||||||||    
T  30731478 ggatggtgtggaacatgatcatgtgagcccacaggagctggtggagagtcccaagggtgc 30731537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 372
Target Start/End: Complemental strand, 17158886 - 17158540
Alignment:
Q  30 cagttgttacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctag 129  Q
    ||||||||||||||||  |||| ||||||||||| | ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  17158886 cagttgttacttctcagttgacagtccctatgcccaagacgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctag 17158787  T
Q  130 tgaggagctgctactagctacgccagtgtttgaaattgtttcccggtt---gcatgatgaagtgcattctgagagagt-ggagcagtcgcatccgacatc 225  Q
    |||  |||||| ||| |||||||||||||||||||||||||||  |||   ||| ||||||||||||||||||||||| ||| ||||||||||||| |||    
T  17158786 tgaaaagctgccactcgctacgccagtgtttgaaattgtttcctagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatccgatatc 17158687  T
Q  226 gcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagt 325  Q
    |||||||||||||||||||| ||| ||||||||||||||| | || ||||||||||||||||| ||||||||||||| |||  || |  |||||||||||    
T  17158686 gcgggaggagttggagaaccctgtggttgacgatgttactgcgacactctcggatgatgtggagcataatcattcgcacccctagtagttggtggagagt 17158587  T
Q  326 ccgaagggtgcccatgagcatgtaccacattcatcaattgttgagca 372  Q
    || ||||| | |||||||||||||| |||||||||||||||| ||||    
T  17158586 cccaagggggaccatgagcatgtactacattcatcaattgttaagca 17158540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 37 - 372
Target Start/End: Original strand, 14977470 - 14977808
Alignment:
Q  37 tacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggag 136  Q
    ||||||||| |||| ||||||| |||| ||||| || ||||| ||||||||||| ||||| ||| | || ||| ||||||| |  |||||||||||| ||    
T  14977470 tacttctcagatgatggtccctgtgcccaggacgtctttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaag 14977569  T
Q  137 ctgctactagctacgccagtgtttgaaattgtttcccg-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggagg 233  Q
     ||| |  |||||| |||||| ||||  |||| ||||  |||||  | ||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  14977570 ttgccagaagctacaccagtgattgagtttgtgtccccagttgcgcacgatgacgtgcattccgagagagtggagcagtcgcatccgacatcgcgggagg 14977669  T
Q  234 agttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaaggg 333  Q
    || || ||| ||     ||||||||||||||| | ||||| ||  |||||||||||||||||||||||  ||| | ||| |||||||||||||| |||||    
T  14977670 aggtgcagatcccaacggttgacgatgttactgctacgctatcttatgatgtggaacataatcattcgaccccgcgggagctggtggagagtcccaaggg 14977769  T
Q  334 tgcccatgagcatgtaccacattcatcaattgttgagca 372  Q
    | ||||||||||||| ||||||||||| |||||| ||||    
T  14977770 ttcccatgagcatgttccacattcatccattgtttagca 14977808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 74 - 245
Target Start/End: Complemental strand, 11776482 - 11776308
Alignment:
Q  74 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 173  Q
    ||||||||||  ||||||||||||||| | ||||| | ||||||||| ||||||  ||||||| ||| ||  | ||| |||||||| ||  |||||||||    
T  11776482 ttgtcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgtttccc 11776383  T
Q  174 g-gttg--catgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 245  Q
      ||||  || ||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  11776382 ctgttgtgcacgatgatgtgcattctgagagagtggagcagttgcatcagtcatcgcgggaggagttggagaacc 11776308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 9352477 - 9352421
Alignment:
Q  189 tgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 245  Q
    ||||||||||||||||||| |||| || || ||||||||| |||| |||||||||||    
T  9352477 tgcattctgagagagtggaacagttgcgtctgacatcgcgagaggtgttggagaacc 9352421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 24353686 - 24353638
Alignment:
Q  197 gagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 245  Q
    ||||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  24353686 gagagagcgaagcagttgcatcagacatcgcgggaggagttggagaacc 24353638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 57 - 372
Target Start/End: Original strand, 12101751 - 12102064
Alignment:
Q  57 ctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagt 156  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||| | || ||| || | |||    
T  12101751 ctatgcctatgacgtcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagt 12101850  T
Q  157 gtttgaaattgtttccc---ggttgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtt 253  Q
    |||||||||| ||||||      |||| ||||| |||||| ||||||||| ||||||  | ||| |||||||||||||||||||||||||||   | | |    
T  12101851 gtttgaaattatttccccaattgtgcacgatgacgtgcatcctgagagagcggagcaaacacattcgacatcgcgggaggagttggagaaccccatggct 12101950  T
Q  254 gacgatgttactccaacgctctcggatgatgtggaac----ataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgta 349  Q
    |||||||||||| | |  |         |||||||||    |||||||||||||||| | ||| |||||||||||||| ||||||||| |||||||||||    
T  12101951 gacgatgttactacgatac---------atgtggaacatatataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgta 12102041  T
Q  350 ccacattcatcaattgttgagca 372  Q
    |||||||||||||||||||||||    
T  12102042 ccacattcatcaattgttgagca 12102064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 74 - 360
Target Start/End: Complemental strand, 5782191 - 5781902
Alignment:
Q  74 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 173  Q
    ||||||||||  ||||||||||||||| | || || |||||  | |  ||||||  ||||||||||| |   |||||||||||||| ||  |||||||||    
T  5782191 ttgtcgtcaaactctttcagctttccattacacaatgtgttcaatagaatttctcctgaggagctgccatgtgctacgccagtgttagaggttgtttccc 5782092  T
Q  174 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 270  Q
      |||||  | ||||| |||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||    || || |||||||||   ||    
T  5782091 ttgttgcgcacgatgacgtgcattctgagagagaggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttactgttac 5781992  T
Q  271 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 360  Q
     || || |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| ||||||||| |||| ||| ||||||    
T  5781991 actttctgatgatgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatc 5781902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 74 - 360
Target Start/End: Complemental strand, 19069709 - 19069420
Alignment:
Q  74 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 173  Q
    ||||||||||  ||||||||||||||| | || || | ||||||||| ||||||  | ||||||||| ||  |||||||||||||| ||  || ||||||    
T  19069709 ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc 19069610  T
Q  174 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 270  Q
      |||||  | ||||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||     || || |||||||||   ||    
T  19069609 ctgttgcgcacgatgacgtgcattctgagagagaggagcggttgcatcagacatcgcgagaggagttggagaaccccacggtggaagatgttactgttac 19069510  T
Q  271 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 360  Q
     || ||  ||||||||||||| |||||||||  ||| ||||| |||||||||||||| ||||||  |||||||| | || ||||||||||    
T  19069509 cctttctaatgatgtggaacacaatcattcgatcccgcaggagctggtggagagtcccaagggtttccatgagcgtatatcacattcatc 19069420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 17763963 - 17764060
Alignment:
Q  251 gttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgt 348  Q
    ||||| ||||||||| | ||||| || ||||||||||||||||||||||   ||   | ||| |||||||||||||  |||||| |||||||||||||    
T  17763963 gttgatgatgttactgctacgctttctgatgatgtggaacataatcatttaagctggcgggagctggtggagagtctcaagggttcccatgagcatgt 17764060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 11724701 - 11724758
Alignment:
Q  188 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 245  Q
    ||||||||| ||||||  ||||| | ||||| |||||||||||||| |||||||||||    
T  11724701 gtgcattctaagagagcagagcaattgcatctgacatcgcgggaggtgttggagaacc 11724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 355
Target Start/End: Original strand, 16311632 - 16311799
Alignment:
Q  188 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 287  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16311632 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16311731  T
Q  288 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 355  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  16311732 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 16311799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 355
Target Start/End: Original strand, 18488416 - 18488583
Alignment:
Q  188 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 287  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18488416 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18488515  T
Q  288 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 355  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18488516 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18488583  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 355
Target Start/End: Original strand, 18492626 - 18492793
Alignment:
Q  188 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 287  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18492626 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18492725  T
Q  288 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 355  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18492726 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18492793  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 340
Target Start/End: Complemental strand, 19829181 - 19829018
Alignment:
Q  177 tgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctc 276  Q
    |||| ||||| |||||||||||||||| ||||| || ||| | |||||| | || ||||||||||||||    |||  |||||||||||   || || ||    
T  19829181 tgcacgatgacgtgcattctgagagagaggagcggttgcaccagacatcacagggggagttggagaaccccacagtgaacgatgttactgttacactttc 19829082  T
Q  277 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccat 340  Q
     |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| |||||    
T  19829081 tgatgatgtggaacacaatcattcgaacccgcgggagctggtggagagtcccaagggttcccat 19829018  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 326
Target Start/End: Original strand, 16314023 - 16314161
Alignment:
Q  188 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 287  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16314023 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16314122  T
Q  288 aacataatcattcgcgcccacaggatctggtggagagtc 326  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  16314123 aatataatcgttcgcgcccacgggagctggtggagagtc 16314161  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 326
Target Start/End: Original strand, 18495017 - 18495155
Alignment:
Q  188 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 287  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18495017 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18495116  T
Q  288 aacataatcattcgcgcccacaggatctggtggagagtc 326  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  18495117 aatataatcgttcgcgcccacgggagctggtggagagtc 18495155  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 344
Target Start/End: Original strand, 17459431 - 17459587
Alignment:
Q  188 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 287  Q
    |||||||| |||||||  ||||| | ||||||||||||||||||  ||||||||||||   |||| |||||||| |||   ||||| ||  |||||||||    
T  17459431 gtgcattccgagagagcagagcaattgcatccgacatcgcgggaaaagttggagaaccccatagtggacgatgtcactgttacgctttctaatgatgtgg 17459530  T
Q  288 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagc 344  Q
    |||| ||||||||| |||| | |||  ||||||||||||  || ||| |||||||||    
T  17459531 aacacaatcattcgagcccgcgggagatggtggagagtctcaacggtccccatgagc 17459587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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