View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17235_high_1 (Length: 876)
Name: NF17235_high_1
Description: NF17235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17235_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 799; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 799; E-Value: 0
Query Start/End: Original strand, 38 - 861
Target Start/End: Complemental strand, 41078046 - 41077215
Alignment:
| Q |
38 |
tagaagacatgcataaaaggggtcagtatacatccatgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatgattctgc |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41078046 |
tagaagacatgcataaaaggggtcagtatacatccatgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatgattctgc |
41077947 |
T |
|
| Q |
138 |
atacaaaacctatgaagtaaaaccagaaatacaactaaggaatactaattactaagcactaaaaagatattgtcaccagagcagctaaactgatgctgca |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41077946 |
atacaaaacctatgaagtaaaaccagaaatacaactaaggaatactaattactaagcactaaaaagatattgtcaccagagcagctaaactgatgctgca |
41077847 |
T |
|
| Q |
238 |
gcaaaatggaattataatctccattatgactcacttcttgaacccatggctaccatcatagacacatccaccacaccaagtaattgtggcaatccttccg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41077846 |
gcaaaatggaattataatctccattatgactcacttcttgaacccatggctaccatcatagacacatccaccacaccaagtaattgtggcaatccttccg |
41077747 |
T |
|
| Q |
338 |
gttcaaactatcaccacttcaacatggtgctcagtgctcacatagctatcaagctttccgcttccaatttcatacttggcaaagacaagccaattcaatc |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41077746 |
gttcaaactatcaccacttcaacatggtgctcagtgctcacatagctatcaagctttccgcttccaatttcatacttggcaaagacaagccaattcaatc |
41077647 |
T |
|
| Q |
438 |
cttgccggtatgaaatgtctcggctatatcaattgaaaggttacttcacaacctgggtttattactgccattgacacctctacccccaatacaaagttac |
537 |
Q |
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| T |
41077646 |
cttgccggtatgaaatgtctcggctatatcaatcgaaaggttacttcacaacctgggtttattactgccattgacacctctacccccaatacaaagttac |
41077547 |
T |
|
| Q |
538 |
aaactatgatgtttggtttgctacaggtcaacttcttgttgcatttctcatcgcctatgtaaatgagcgcgagagagttgggttctcctcctgcgacaca |
637 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41077546 |
aaactatgatgtttggtttgctacaggtcaacttcttgttgcatttctcatcgcctatgtaaatgagcgcgagagagttgggttctcctcctgcgacaca |
41077447 |
T |
|
| Q |
638 |
gcctgccaaatatggaagcccattgaggtcaaatatgcaaatctatctcggactcatttgatgtccctaaagaactgtagggaagtcataagggc----- |
732 |
Q |
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| T |
41077446 |
gcctgccaaatatggaagcccattgaggtcaaatatgcaaatctatctcggactcatttgatgtccctaaagaactgtagggaagtcataagggctctca |
41077347 |
T |
|
| Q |
733 |
---tgtcatactcaacatcgctctttctatcaaagatcgagacattgcaactctcaatcaaaccatccactgccaactgtgactttaatttccaggacat |
829 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41077346 |
aaatgtcatactcaacatcgctctttctatcaaagatcgagacattgcaactctcaatcaaaccatccactgccaactgtgactttaatttccaggacat |
41077247 |
T |
|
| Q |
830 |
tacaaaatattggttccagtcaccatgttgct |
861 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
41077246 |
tacaaaatattggttccagtcaccatgttgct |
41077215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 1217228 - 1217178
Alignment:
| Q |
80 |
catagaatcaattaaagcatagcataatacaatataggcacacatctcatg |
130 |
Q |
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||||||||||||||||||||||||||||| ||| | |||||||||||||| |
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| T |
1217228 |
catagaatcaattaaagcatagcataataaaattcaagcacacatctcatg |
1217178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 712
Target Start/End: Original strand, 50191477 - 50191530
Alignment:
| Q |
659 |
attgaggtcaaatatgcaaatctatctcggactcatttgatgtccctaaagaac |
712 |
Q |
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| T |
50191477 |
attgaggccaaatatgcaaatccatatcggactcatgtgatgtccctgaagaac |
50191530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 4132034 - 4132091
Alignment:
| Q |
73 |
atgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatg |
130 |
Q |
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|||| ||||||||||| |||||||||||||| |||||||| | ||||| |||||||| |
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| T |
4132034 |
atgataacatagaatcgattaaagcatagcacaatacaattcaagcacatatctcatg |
4132091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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