View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17235_low_10 (Length: 254)

Name: NF17235_low_10
Description: NF17235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17235_low_10
NF17235_low_10
[»] chr2 (20 HSPs)
chr2 (1-240)||(44829256-44829509)
chr2 (46-95)||(28223788-28223837)
chr2 (46-98)||(9224263-9224315)
chr2 (46-95)||(4386997-4387046)
chr2 (46-97)||(20244208-20244259)
chr2 (49-95)||(43743842-43743888)
chr2 (46-95)||(4769051-4769100)
chr2 (46-95)||(7716671-7716720)
chr2 (46-95)||(16571118-16571167)
chr2 (46-95)||(32471939-32471988)
chr2 (46-102)||(9958740-9958796)
chr2 (46-100)||(6849579-6849633)
chr2 (46-96)||(7583830-7583880)
chr2 (46-92)||(8113337-8113383)
chr2 (48-98)||(18950534-18950584)
chr2 (46-87)||(4386363-4386404)
chr2 (46-87)||(6849296-6849337)
chr2 (46-87)||(10883295-10883336)
chr2 (46-95)||(12206788-12206837)
chr2 (46-87)||(28224425-28224466)
[»] chr4 (26 HSPs)
chr4 (159-240)||(48516898-48516980)
chr4 (46-97)||(199263-199314)
chr4 (48-95)||(39844896-39844943)
chr4 (46-95)||(388753-388802)
chr4 (42-87)||(52869455-52869500)
chr4 (46-98)||(33569717-33569769)
chr4 (46-96)||(2713880-2713930)
chr4 (46-96)||(12639964-12640014)
chr4 (46-96)||(52870153-52870203)
chr4 (46-95)||(25370429-25370478)
chr4 (46-95)||(52597748-52597797)
chr4 (46-95)||(55815825-55815874)
chr4 (55-95)||(18501739-18501779)
chr4 (47-95)||(35428238-35428286)
chr4 (46-97)||(31876786-31876837)
chr4 (46-101)||(33570313-33570368)
chr4 (46-87)||(199007-199048)
chr4 (46-95)||(3220517-3220566)
chr4 (46-87)||(3221424-3221465)
chr4 (46-95)||(7988282-7988331)
chr4 (46-87)||(20075533-20075574)
chr4 (46-95)||(40847677-40847726)
chr4 (46-95)||(48091132-48091181)
chr4 (46-87)||(55816487-55816528)
chr4 (55-95)||(33758133-33758173)
chr4 (53-97)||(45778731-45778775)
[»] chr5 (11 HSPs)
chr5 (46-96)||(39149468-39149518)
chr5 (46-97)||(3957498-3957549)
chr5 (46-96)||(4929543-4929593)
chr5 (46-96)||(38064141-38064191)
chr5 (56-95)||(26688096-26688135)
chr5 (56-95)||(26957827-26957866)
chr5 (42-83)||(21612136-21612177)
chr5 (46-95)||(25074283-25074332)
chr5 (46-95)||(25132252-25132301)
chr5 (46-86)||(25075034-25075074)
chr5 (46-86)||(25133003-25133043)
[»] scaffold0039 (2 HSPs)
scaffold0039 (46-97)||(90613-90664)
scaffold0039 (46-84)||(32902-32940)
[»] chr3 (19 HSPs)
chr3 (46-96)||(3944894-3944944)
chr3 (46-95)||(23584920-23584969)
chr3 (46-95)||(23599743-23599792)
chr3 (46-95)||(25025174-25025223)
chr3 (46-87)||(38279417-38279458)
chr3 (46-87)||(46187033-46187074)
chr3 (55-95)||(41040571-41040611)
chr3 (56-96)||(42356232-42356272)
chr3 (55-98)||(38280304-38280347)
chr3 (53-95)||(8424007-8424049)
chr3 (57-95)||(49752973-49753011)
chr3 (46-87)||(25025801-25025842)
chr3 (46-95)||(31014961-31015010)
chr3 (46-95)||(32672166-32672215)
chr3 (46-95)||(37373965-37374014)
chr3 (60-97)||(37374818-37374855)
chr3 (46-95)||(50687745-50687794)
chr3 (46-95)||(55282458-55282506)
chr3 (55-95)||(53269394-53269434)
[»] chr8 (15 HSPs)
chr8 (46-95)||(7818474-7818523)
chr8 (46-95)||(33114225-33114274)
chr8 (46-96)||(16889194-16889244)
chr8 (46-96)||(35237258-35237308)
chr8 (46-95)||(11999117-11999166)
chr8 (46-95)||(39852154-39852203)
chr8 (46-95)||(41761799-41761848)
chr8 (42-95)||(43433811-43433864)
chr8 (42-95)||(43434697-43434750)
chr8 (55-95)||(37532576-37532616)
chr8 (46-93)||(4374447-4374494)
chr8 (46-87)||(35237900-35237941)
chr8 (46-87)||(43591015-43591056)
chr8 (49-101)||(36780-36832)
chr8 (51-87)||(37533319-37533355)
[»] chr7 (19 HSPs)
chr7 (46-95)||(85086-85135)
chr7 (46-95)||(34854033-34854082)
chr7 (46-92)||(33806604-33806650)
chr7 (42-87)||(84385-84430)
chr7 (46-95)||(36682835-36682884)
chr7 (46-99)||(38914120-38914173)
chr7 (46-98)||(8466537-8466589)
chr7 (56-96)||(42455920-42455960)
chr7 (46-97)||(4271234-4271285)
chr7 (46-101)||(27855560-27855615)
chr7 (55-97)||(30422789-30422830)
chr7 (6-39)||(84448-84481)
chr7 (46-87)||(19816272-19816313)
chr7 (50-95)||(23283883-23283928)
chr7 (46-87)||(24044080-24044121)
chr7 (46-87)||(34853399-34853440)
chr7 (46-87)||(36683501-36683542)
chr7 (46-87)||(42456553-42456594)
chr7 (46-95)||(48881059-48881108)
[»] chr6 (7 HSPs)
chr6 (46-97)||(13936677-13936728)
chr6 (46-95)||(5523883-5523932)
chr6 (46-95)||(33668221-33668270)
chr6 (55-95)||(32079019-32079059)
chr6 (46-87)||(5523208-5523249)
chr6 (46-87)||(12809077-12809118)
chr6 (46-95)||(30611382-30611431)
[»] scaffold0229 (1 HSPs)
scaffold0229 (46-95)||(15270-15319)
[»] chr1 (11 HSPs)
chr1 (46-95)||(1403040-1403089)
chr1 (46-95)||(49534433-49534482)
chr1 (46-96)||(50269247-50269297)
chr1 (46-95)||(7782728-7782777)
chr1 (50-95)||(8560156-8560201)
chr1 (46-95)||(29148940-29148989)
chr1 (46-95)||(42838937-42838986)
chr1 (46-87)||(42839709-42839750)
chr1 (48-89)||(43352827-43352868)
chr1 (54-87)||(48620368-48620401)
chr1 (55-95)||(6288250-6288290)
[»] scaffold0368 (1 HSPs)
scaffold0368 (46-95)||(11821-11870)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 44829256 - 44829509
Alignment:
Q  1 ggcaatgttgaaagtgtatgataagattgtgctcttcaatt--------------agtgaactttcctatggtgggaaaggattcaccattcccatgtga 86  Q
    |||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||| ||||||||||||||||||||||||    
T  44829256 ggcaatgttgaaagtgtatgataagattgtgctcttcaattgatctaatgactaaagtgaactttcctatggtggaaaaggattcaccattcccatgtga 44829355  T
Q  87 aatgccaccataaaactatcctttataaggacaataatttgagtaaaatcaccattgtcaccacagtatagaagaatatagacataaactaaattcttct 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44829356 aatgccaccataaaactatcctttataaggacaataatttgagtaaaatcaccattgtcaccactgtatagaagaatatagacataaactaaattcttct 44829455  T
Q  187 catctctagagaatacattacatctttaaatttcgcaatcttttcagaggtaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44829456 catctctagagaatacattacatctttaaatttcgcaatcttttcagaggtaaa 44829509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 28223837 - 28223788
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  28223837 aactttcctatggtgggaaaggattaacctttcccatgtgaaatgccacc 28223788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 9224315 - 9224263
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccata 98  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  9224315 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccata 9224263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 4386997 - 4387046
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  4386997 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 4387046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 20244208 - 20244259
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 97  Q
    |||||| | |||||||||||||||| ||| ||||||||||||||||||||||    
T  20244208 aacttttccatggtgggaaaggattaacctttcccatgtgaaatgccaccat 20244259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 43743842 - 43743888
Alignment:
Q  49 tttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||||    
T  43743842 tttcccatggtgggaaaggattcacctttcccatgtgaaatgtcacc 43743888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 4769051 - 4769100
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||||||||||||||||| || || |||||| ||||||||||    
T  4769051 aactttcctatggtgggaaaggattccccttttccatgttaaatgccacc 4769100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 7716720 - 7716671
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||  ||||||||||||||||||||    
T  7716720 aactttcccatggtgggaaaggattaacatttcccatgtgaaatgccacc 7716671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 16571167 - 16571118
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||| ||||    
T  16571167 aactttcccatggtgggaaaggattaacctttcccatgtgaaatggcacc 16571118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 32471988 - 32471939
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||||||||||||||| |||| ||||||||| ||||||||||    
T  32471988 aactttcccatggtgggaaaggatccacctttcccatgttaaatgccacc 32471939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 9958740 - 9958796
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataaaac 102  Q
    ||||||| ||||||||||||||||| | | ||||||||| ||||||||||| |||||    
T  9958740 aactttcttatggtgggaaaggattgatctttcccatgttaaatgccaccacaaaac 9958796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 6849579 - 6849633
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataaa 100  Q
    |||||||| |||||||||||||||| ||| || |||||| |||||||||| ||||    
T  6849579 aactttcccatggtgggaaaggattaaccttttccatgtaaaatgccaccttaaa 6849633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 7583830 - 7583880
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    |||||||| || |||||||| |||| ||| |||||||||||||||||||||    
T  7583830 aactttcccatagtgggaaaagattaacctttcccatgtgaaatgccacca 7583880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 8113337 - 8113383
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgcc 92  Q
    |||||||| ||||||| |||||||| ||| |||||||||||||||||    
T  8113337 aactttcccatggtggaaaaggattaacctttcccatgtgaaatgcc 8113383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 18950534 - 18950584
Alignment:
Q  48 ctttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccata 98  Q
    |||||| |||||||||||||||| ||| || |||| |||||||||||||||    
T  18950534 ctttcccatggtgggaaaggattaaccttttccatatgaaatgccaccata 18950584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 4386404 - 4386363
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||    
T  4386404 aactttcctatggtgggaaagtattaacctttcccatgtgaa 4386363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 6849337 - 6849296
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  6849337 aactttcccatggtgggaaaggattaacctttcccatgtgaa 6849296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 10883336 - 10883295
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  10883336 aactttcccatggtgggaaaggattaacctttcccatgtgaa 10883295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 12206837 - 12206788
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||  |||||||||||||||| ||| ||||||||||||||| ||||    
T  12206837 aactttctcatggtgggaaaggattaacctttcccatgtgaaatgtcacc 12206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 28224425 - 28224466
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  28224425 aactttcccatggtgggaaaggattaacctttcccatgtgaa 28224466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 48516898 - 48516980
Alignment:
Q  159 agaatatagacataaactaaattctt-ctcatctctagagaatacattacatctttaaatttcgcaatcttttcagaggtaaa 240  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||  ||||||| ||||||||||    
T  48516898 agaatatagacataaactaaattctttctcatctctggagaatacatcacatctttaaatttcttaatctttccagaggtaaa 48516980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 199263 - 199314
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 97  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  199263 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccat 199314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 39844943 - 39844896
Alignment:
Q  48 ctttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  39844943 ctttcctatggtgggaaaggattcccctttcccatgtgaaatgccacc 39844896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 388802 - 388753
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  388802 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 388753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 52869500 - 52869455
Alignment:
Q  42 agtgaactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||    
T  52869500 agtgaactttcccatggtgggaaaggattcacctttcccatgtgaa 52869455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 33569769 - 33569717
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccata 98  Q
    |||||| | |||||||||||||||| ||| |||||||||||||||||||||||    
T  33569769 aacttttccatggtgggaaaggattgacctttcccatgtgaaatgccaccata 33569717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 2713880 - 2713930
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    |||||| | |||||||||||||||| ||| |||||||||||||||||||||    
T  2713880 aacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacca 2713930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 12640014 - 12639964
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    |||||||| ||||||| |||||||| ||| |||||||||||||||||||||    
T  12640014 aactttcccatggtggaaaaggattaacctttcccatgtgaaatgccacca 12639964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 52870153 - 52870203
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    |||||||| ||| ||| |||||||||||| |||||||||||||||||||||    
T  52870153 aactttcccatgatggaaaaggattcacctttcccatgtgaaatgccacca 52870203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 25370429 - 25370478
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| ||||||||| ||||||||||    
T  25370429 aactttcccatggtgggaaaggattaacctttcccatgtaaaatgccacc 25370478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 52597748 - 52597797
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||||||  |||||||| ||| ||||||||||||||||||||    
T  52597748 aactttcctatggtgaaaaaggattaacctttcccatgtgaaatgccacc 52597797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 55815874 - 55815825
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| || ||||||||||||| ||| ||||||||||||||||||||    
T  55815874 aactttcccatagtgggaaaggattaacctttcccatgtgaaatgccacc 55815825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 18501779 - 18501739
Alignment:
Q  55 atggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  18501779 atggtgggaaaggattaacctttcccatgtgaaatgccacc 18501739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 35428238 - 35428286
Alignment:
Q  47 actttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    ||||||| |||||||||||||||| ||| ||||||| ||||||||||||    
T  35428238 actttcccatggtgggaaaggattaacctttcccatctgaaatgccacc 35428286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 31876837 - 31876786
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 97  Q
    |||||| | ||||||| |||||||| ||| ||||||||||||||||||||||    
T  31876837 aacttttccatggtggaaaaggattaacctttcccatgtgaaatgccaccat 31876786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 33570313 - 33570368
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataaaa 101  Q
    ||||||| |||||||| |||||||| ||| || |||||||||||||||||| ||||    
T  33570313 aactttcttatggtggaaaaggattgaccttttccatgtgaaatgccaccaaaaaa 33570368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 199048 - 199007
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  199048 aactttcccatggtgggaaaggattaacctttcccatgtgaa 199007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 3220566 - 3220517
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||| |||||||||||||||| ||||||| | ||||| ||||    
T  3220566 aactttcctatgatgggaaaggattcacctttcccatataaaatgtcacc 3220517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 3221424 - 3221465
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| || ||||||||||||||||| ||||||||||||    
T  3221424 aactttcccatcgtgggaaaggattcacctttcccatgtgaa 3221465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 7988282 - 7988331
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    ||||||||||||||| |||||||||  || ||||||||| ||||||||||    
T  7988282 aactttcctatggtgagaaaggatttccctttcccatgttaaatgccacc 7988331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 20075574 - 20075533
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  20075574 aactttcccatggtgggaaaggattaacctttcccatgtgaa 20075533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 40847726 - 40847677
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||  |||||||||||||||| ||| || |||||||||||||||||    
T  40847726 aactttctcatggtgggaaaggattaaccttttccatgtgaaatgccacc 40847677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 48091132 - 48091181
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||||||||||| |||| ||| ||||||| ||||||||||||    
T  48091132 aactttcccatggtgggaaaagattaacctttcccatatgaaatgccacc 48091181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 55816487 - 55816528
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  55816487 aactttcccatggtgggaaaggattaacctttcccatgtgaa 55816528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 33758133 - 33758173
Alignment:
Q  55 atggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||||||| ||| ||||||||||||||| ||||    
T  33758133 atggtgggaaaggattgacctttcccatgtgaaatgacacc 33758173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 45778731 - 45778775
Alignment:
Q  53 ctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 97  Q
    |||||||||||||||||| ||| |||||||||||||  |||||||    
T  45778731 ctatggtgggaaaggattaacctttcccatgtgaaactccaccat 45778775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 39149468 - 39149518
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  39149468 aactttcccatggtgggaaaggattcacctttcccatgtgaaatgccacca 39149518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 3957549 - 3957498
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 97  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  3957549 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccat 3957498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 4929543 - 4929593
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    |||||||| ||||||| |||||||| ||| |||||||||||||||||||||    
T  4929543 aactttcccatggtggaaaaggattaacctttcccatgtgaaatgccacca 4929593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 38064191 - 38064141
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    |||||||| ||||||||||||  |||||| |||||||||||||||||||||    
T  38064191 aactttcccatggtgggaaagttttcacccttcccatgtgaaatgccacca 38064141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 26688096 - 26688135
Alignment:
Q  56 tggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  26688096 tggtgggaaaggattaacctttcccatgtgaaatgccacc 26688135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 26957827 - 26957866
Alignment:
Q  56 tggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  26957827 tggtgggaaaggattaacctttcccatgtgaaatgccacc 26957866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 21612136 - 21612177
Alignment:
Q  42 agtgaactttcctatggtgggaaaggattcaccattcccatg 83  Q
    ||||| |||||||||||||||||| |||||||| ||||||||    
T  21612136 agtgacctttcctatggtgggaaaagattcacctttcccatg 21612177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 25074332 - 25074283
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||||||| ||| |||| |||||| |||||||||||||||||    
T  25074332 aactttcccatggtggaaaaagattaaccatttccatgtgaaatgccacc 25074283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 25132301 - 25132252
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||||||| ||| |||| |||||| |||||||||||||||||    
T  25132301 aactttcccatggtggaaaaagattaaccatttccatgtgaaatgccacc 25132252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 25075034 - 25075074
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtga 86  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  25075034 aactttcccatggtgggaaaggattaacctttcccatgtga 25075074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 25133003 - 25133043
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtga 86  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  25133003 aactttcccatggtgggaaaggattaacctttcccatgtga 25133043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 90664 - 90613
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 97  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||||||    
T  90664 aactttcctatggtggaaaatgattcacctttcccatgtgaaatgccaccat 90613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 32940 - 32902
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgt 84  Q
    |||||||||||||||||||||||||| || |||||||||    
T  32940 aactttcctatggtgggaaaggattctcctttcccatgt 32902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 3944944 - 3944894
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  3944944 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacca 3944894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 23584920 - 23584969
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||| | |||||||||||||||| ||| ||||||||||||||||||||    
T  23584920 aactttaccatggtgggaaaggattaacctttcccatgtgaaatgccacc 23584969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 23599743 - 23599792
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||| | |||||||||||||||| ||| ||||||||||||||||||||    
T  23599743 aactttaccatggtgggaaaggattaacctttcccatgtgaaatgccacc 23599792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 25025223 - 25025174
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||| |||||||||||| ||| ||||||||||||||||||||    
T  25025223 aactttcccatgatgggaaaggattaacctttcccatgtgaaatgccacc 25025174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 38279458 - 38279417
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  38279458 aactttcccatggtgggaaaggattcacctttcccatgtgaa 38279417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 46187033 - 46187074
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  46187033 aactttcctatggtgagaaaggattcacctttcccatgtgaa 46187074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 41040611 - 41040571
Alignment:
Q  55 atggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  41040611 atggtgagaaaggattcacctttcccatgtgaaatgccacc 41040571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 42356272 - 42356232
Alignment:
Q  56 tggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  42356272 tggtgggaaaggattgacctttcccatgtgaaatgccacca 42356232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 38280304 - 38280347
Alignment:
Q  55 atggtgggaaaggattcaccattcccatgtgaaatgccaccata 98  Q
    ||||||||||||||||  || |||||||||||||||||||||||    
T  38280304 atggtgggaaaggattggcctttcccatgtgaaatgccaccata 38280347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 8424049 - 8424007
Alignment:
Q  53 ctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||    
T  8424049 ctatggtgggaaaggattcacctttcccatgttaaatgacacc 8424007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 49752973 - 49753011
Alignment:
Q  57 ggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  49752973 ggtgggaaaggattaacctttcccatgtgaaatgccacc 49753011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 25025801 - 25025842
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  25025801 aactttcccatggtgggaaaggattaacctttcccatgtgaa 25025842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 31014961 - 31015010
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||| ||||||| |||| ||| ||||||| ||||||||||||    
T  31014961 aactttcctatgatgggaaaagattaacctttcccatatgaaatgccacc 31015010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 32672215 - 32672166
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||| |||||||||||| ||| ||||||||| ||||||||||    
T  32672215 aactttcccatgttgggaaaggattaacctttcccatgtaaaatgccacc 32672166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 37374014 - 37373965
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||||||||||| |||| ||| ||||||||| ||||||||||    
T  37374014 aactttcccatggtgggaaaagattaacctttcccatgtaaaatgccacc 37373965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 37374855 - 37374818
Alignment:
Q  60 gggaaaggattcaccattcccatgtgaaatgccaccat 97  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  37374855 gggaaaggattaacctttcccatgtgaaatgccaccat 37374818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 50687745 - 50687794
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||| ||| ||| ||||||||||||||| ||||    
T  50687745 aactttcccatggtgggaaagaattaacctttcccatgtgaaatgtcacc 50687794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 55282458 - 55282506
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| | | ||||||||||||||||||||    
T  55282458 aactttcccatggtgggaaaggattaaac-ttcccatgtgaaatgccacc 55282506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 53269394 - 53269434
Alignment:
Q  55 atggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||||||| ||| ||||||||||||||| ||||    
T  53269394 atggtgggaaaggattaacctttcccatgtgaaatgtcacc 53269434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 7818523 - 7818474
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  7818523 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 7818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 33114225 - 33114274
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  33114225 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 33114274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 16889244 - 16889194
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    |||||||| ||||||||||| |||| ||| |||||||||||||||||||||    
T  16889244 aactttcccatggtgggaaaagattaacctttcccatgtgaaatgccacca 16889194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 35237308 - 35237258
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||| |||||    
T  35237308 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgtcacca 35237258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 11999117 - 11999166
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  11999117 aactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 11999166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 39852203 - 39852154
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| ||||||| ||||||||||||    
T  39852203 aactttcccatggtgggaaaggattaacctttcccatttgaaatgccacc 39852154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 41761848 - 41761799
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||| ||| |||||||||||||||| ||| ||||||||||||||||||||    
T  41761848 aactgtcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 41761799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 43433864 - 43433811
Alignment:
Q  42 agtgaactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||| ||||||||||| ||||| || ||||||||| ||||||||||    
T  43433864 agtgaactttcccatggtgggaaatgattcccctttcccatgttaaatgccacc 43433811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 43434697 - 43434750
Alignment:
Q  42 agtgaactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||| | ||||||||||| |||||||| ||||||||| ||||||||||    
T  43434697 agtgaacttttccatggtgggaaaagattcacctttcccatgttaaatgccacc 43434750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 37532616 - 37532576
Alignment:
Q  55 atggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  37532616 atggtgggaaaggattaacctttcccatgtgaaatgccacc 37532576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 4374494 - 4374447
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgcca 93  Q
    |||||||||||||||||||| |||| ||| ||| ||||||||||||||    
T  4374494 aactttcctatggtgggaaaagattgacctttctcatgtgaaatgcca 4374447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 35237900 - 35237941
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||| |||||||||||||||||| ||| ||||||||||||    
T  35237900 aacttttctatggtgggaaaggattaacctttcccatgtgaa 35237941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 43591056 - 43591015
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  43591056 aactttcccatggtgggaaaggattaacctttcccatgtgaa 43591015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 36780 - 36832
Alignment:
Q  49 tttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataaaa 101  Q
    ||||||||||||||||||  |||||  | ||||||||||||||||||| ||||    
T  36780 tttcctatggtgggaaagttttcacattccccatgtgaaatgccaccagaaaa 36832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 37533319 - 37533355
Alignment:
Q  51 tcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  37533319 tcctatggtgggaaaggattaacctttcccatgtgaa 37533355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 85086 - 85135
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  85086 aacttttccatggtgggaaaggattcacctttcccatgtgaaatgccacc 85135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 34854033 - 34854082
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  34854033 aactttcctatggtgggaaaggattaacctttcccatgtgaaatggcacc 34854082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 33806604 - 33806650
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgcc 92  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||    
T  33806604 aactttccaatggtgggaaaggattgacctttcccatgtgaaatgcc 33806650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 84430 - 84385
Alignment:
Q  42 agtgaactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||||||| || ||||||||||||||||| ||||||||||||    
T  84430 agtgaactttcccatagtgggaaaggattcacctttcccatgtgaa 84385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 36682884 - 36682835
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  36682884 aactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 36682835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 38914120 - 38914173
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataa 99  Q
    ||||||||||||||||||||||||||||| || | |||  ||||||||||||||    
T  38914120 aactttcctatggtgggaaaggattcaccttttctatggtaaatgccaccataa 38914173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 8466537 - 8466589
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccata 98  Q
    |||||||| ||||||| ||||  |||||| |||||||||||||||||||||||    
T  8466537 aactttcccatggtggaaaagttttcacccttcccatgtgaaatgccaccata 8466589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 42455960 - 42455920
Alignment:
Q  56 tggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  42455960 tggtgggaaaggattaacctttcccatgtgaaatgccacca 42455920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 4271234 - 4271285
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 97  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||  |||||||    
T  4271234 aactttcctttggtgggaaaggattcacctttcccatgttaaactccaccat 4271285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 27855615 - 27855560
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataaaa 101  Q
    |||||||  ||||||||||| |||| ||| |||||||||||||||||||| |||||    
T  27855615 aactttctcatggtgggaaatgattaacctttcccatgtgaaatgccaccttaaaa 27855560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 30422789 - 30422830
Alignment:
Q  55 atggtgggaaaggattcaccattcccatgtgaaatgccaccat 97  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  30422789 atggtgggaaag-attcacctttcccatgtgaaatgccaccat 30422830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 84481 - 84448
Alignment:
Q  6 tgttgaaagtgtatgataagattgtgctcttcaa 39  Q
    ||||| ||||||||||||||||||||||||||||    
T  84481 tgttgcaagtgtatgataagattgtgctcttcaa 84448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 19816313 - 19816272
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  19816313 aactttcccatggtgggaaaggattaacctttcccatgtgaa 19816272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 23283883 - 23283928
Alignment:
Q  50 ttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||| ||||||||||||||||| || ||||||||||||||| ||||    
T  23283883 ttcccatggtgggaaaggattcccctttcccatgtgaaatgtcacc 23283928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 24044080 - 24044121
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  24044080 aactttcccatggtgggaaaggattaacctttcccatgtgaa 24044121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 34853440 - 34853399
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  34853440 aactttcccatggtgggaaaggattaacctttcccatgtgaa 34853399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 36683501 - 36683542
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  36683501 aactttcccatggtgggaaaggattaacctttcccatgtgaa 36683542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 42456553 - 42456594
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  42456553 aactttcccatggtgggaaaggattaacctttcccatgtgaa 42456594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 48881059 - 48881108
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||| |||||||||||||||||||| ||| || |||||| ||||||||||    
T  48881059 aactgtcctatggtgggaaaggattaaccttttccatgtaaaatgccacc 48881108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 13936677 - 13936728
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 97  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||| ||||||    
T  13936677 aactttcccatggtgggaaaggattaacctttcccatgtgaaatggcaccat 13936728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 5523883 - 5523932
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  5523883 aactttccaatggtgggaaaagattaacctttcccatgtgaaatgccacc 5523932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 33668270 - 33668221
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  33668270 aactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 33668221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 32079059 - 32079019
Alignment:
Q  55 atggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    ||||||| |||||||||||| ||||||||||||||||||||    
T  32079059 atggtggaaaaggattcacctttcccatgtgaaatgccacc 32079019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 5523249 - 5523208
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||||||||||| |||||||| ||| ||||||||||||    
T  5523249 aactttcctatggtggaaaaggattaacctttcccatgtgaa 5523208  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 12809118 - 12809077
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||    
T  12809118 aactttcctatagtgggaaaggattaacctttcccatgtgaa 12809077  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 30611382 - 30611431
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||  ||| ||||||||||||||||    
T  30611382 aactttcccatggtgggaaaggattaacatttctcatgtgaaatgccacc 30611431  T

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Target: scaffold0229 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 15270 - 15319
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| || |||||||||||||||||    
T  15270 aactttcccatggtgggaaaggattaaccttttccatgtgaaatgccacc 15319  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 1403089 - 1403040
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| || |||||||||||||||||    
T  1403089 aactttcccatggtgggaaaggattaaccttttccatgtgaaatgccacc 1403040  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 49534433 - 49534482
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||| | |||||||||||||||| ||| ||||||||||||||||||||    
T  49534433 aacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacc 49534482  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 50269247 - 50269297
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 96  Q
    |||||||| |||||||||||||||||||  ||||||||  |||||||||||    
T  50269247 aactttcccatggtgggaaaggattcacatttcccatggtaaatgccacca 50269297  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 7782728 - 7782777
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| ||||| ||||||||||  || ||||||||||||||||||||    
T  7782728 aactttcccatggtaggaaaggattggcctttcccatgtgaaatgccacc 7782777  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 8560201 - 8560156
Alignment:
Q  50 ttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||| ||||||| |||||||| ||| ||||||||||||||||||||    
T  8560201 ttcccatggtggaaaaggattaacctttcccatgtgaaatgccacc 8560156  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 29148989 - 29148940
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| ||||| ||| ||||||||||    
T  29148989 aactttcccatggtgggaaaggattaacctttcccgtgttaaatgccacc 29148940  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 42838986 - 42838937
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| || |||||||||||| ||||    
T  42838986 aactttcccatggtgggaaaggattaacctttaccatgtgaaatggcacc 42838937  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 42839750 - 42839709
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaa 87  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  42839750 aactttcccatggtgggaaaggattaacctttcccatgtgaa 42839709  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 43352827 - 43352868
Alignment:
Q  48 ctttcctatggtgggaaaggattcaccattcccatgtgaaat 89  Q
    |||||||||||||| |||||||||||| ||||||| ||||||    
T  43352827 ctttcctatggtggaaaaggattcacctttcccatatgaaat 43352868  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 48620368 - 48620401
Alignment:
Q  54 tatggtgggaaaggattcaccattcccatgtgaa 87  Q
    ||||||||||||||||||||| ||||||||||||    
T  48620368 tatggtgggaaaggattcacctttcccatgtgaa 48620401  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 6288250 - 6288290
Alignment:
Q  55 atggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||| ||||||||| ||| ||||||||||||||||||||    
T  6288250 atggtgagaaaggattaacctttcccatgtgaaatgccacc 6288290  T

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Target: scaffold0368 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 11821 - 11870
Alignment:
Q  46 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 95  Q
    |||||||| |||||||||||||||| ||| || |||||||||||| ||||    
T  11821 aactttcccatggtgggaaaggattaacctttaccatgtgaaatggcacc 11870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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