View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17235_low_11 (Length: 214)
Name: NF17235_low_11
Description: NF17235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17235_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 8362296 - 8362452
Alignment:
| Q |
19 |
tagttgatgccatgtttcaaatcacaattgaaattaatttgttgt--ttatatgtttgtgtaaggaacagtaatgagaatcatatttatagataaactaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8362296 |
tagttgatgccatgtttcaaatcacaattgaaattaatttgttgtaattatatgtttgtgtaaggaacagtaatgagaatgatatttatagataaactaa |
8362395 |
T |
|
| Q |
117 |
ttggagttgttacatgaatttatggttgttaaacatatttggtgatctattagtgga |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8362396 |
ttggagttgttacatgaatttatggttgttaaacatatttggtgatctattagtgga |
8362452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University