View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17235_low_2 (Length: 637)
Name: NF17235_low_2
Description: NF17235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17235_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 44 - 345
Target Start/End: Complemental strand, 2692995 - 2692694
Alignment:
| Q |
44 |
atggatagatagtttaagaaatagaagataaaaacccggaatgacatgccaccgcatggaatatatttattttttcgataaacaaatatcatcggtacat |
143 |
Q |
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| T |
2692995 |
atggatagatagtttaagaaataaaagataataacccggaatgacatgccaccacatggaatatatttattttttcgatacacaaatatcattggtacat |
2692896 |
T |
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| Q |
144 |
caagagcataatcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaaccacactttttgtgtttgaattttatttaaaacttagaaaagt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692895 |
caagagcataatcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaaccacactttttgtgtttgaattttatttaaaacttagaaaagt |
2692796 |
T |
|
| Q |
244 |
aaagataaacatacccaaaagtatcataaaaaacaaacgggagcattccagtacgacgtttatcaacctgaccattcacatggctgtttgaacaagcaat |
343 |
Q |
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| T |
2692795 |
aaagataaacatacccaaaagtatcataaaaaacaaacgggagcattccagtacggcgtttatcaacctgaccattcacatggctgtttgaacaagcaat |
2692696 |
T |
|
| Q |
344 |
ag |
345 |
Q |
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|| |
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| T |
2692695 |
ag |
2692694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 414 - 628
Target Start/End: Complemental strand, 2692625 - 2692411
Alignment:
| Q |
414 |
tatacaccttctaaagctgacgtaactgtttggagatccttgcttgaaaggtgaatttgaaaataaagctgttgctaactggtttatttaattgttgtac |
513 |
Q |
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| T |
2692625 |
tatacaccttctaaagctgacataaccgtttggagctccttgcttgaaaggtgaatttgaaaataaagctgttgctaactggtttatttaattgttgtac |
2692526 |
T |
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| Q |
514 |
aagtaagattagatacaataagaatcataaaattttcagtaacataagaatagaacgaacattattaatttaaatttctcaccggctgcaaagctagacc |
613 |
Q |
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| T |
2692525 |
aagtaagattagatacaataagaatcataaaattttcagtaacataagaataaaacgaacattattaatttaaatttctcaccggctgcaaagctagacc |
2692426 |
T |
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| Q |
614 |
ggcgcgcatattctt |
628 |
Q |
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||||||||| ||||| |
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| T |
2692425 |
ggcgcgcattttctt |
2692411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 2684647 - 2684504
Alignment:
| Q |
54 |
agtttaagaaatagaagataaaaacccggaatgacatgccaccgcatggaatatatttattttttcgataaacaaatatcatcggtacatcaagagcata |
153 |
Q |
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||||||||||||||||||| | ||||||||||||||||||| || | ||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
2684647 |
agtttaagaaatagaagatta---cccggaatgacatgccaccacaagcaatatatctattttttcgataaataaataccatcggtacatcaagagcata |
2684551 |
T |
|
| Q |
154 |
atcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaa |
200 |
Q |
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|||| ||| ||||||||||||| | | || |||||| ||||||||| |
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| T |
2684550 |
gtcaataaattgctcaaacctgtaggagaagcacacaacaaatcaaa |
2684504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 419 - 538
Target Start/End: Complemental strand, 2679029 - 2678911
Alignment:
| Q |
419 |
accttctaaagctgacgtaactgtttggagatccttgcttgaaaggtgaatttgaaaataaagctgttgctaactggtttatttaattgttgtacaagta |
518 |
Q |
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||||||| |||||||| |||| |||||| ||||||||||||||||||||| | |||||| || |||| ||||||||||||| ||||||||||||| | |
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| T |
2679029 |
accttcttaagctgacataaccatttggaactccttgcttgaaaggtgaattcgcaaataatgcagttgataactggtttattaaattgttgtacaaatt |
2678930 |
T |
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| Q |
519 |
agattagatacaataagaat |
538 |
Q |
| |
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|| || |||||||||||||| |
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| T |
2678929 |
ag-tttgatacaataagaat |
2678911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 2679228 - 2679169
Alignment:
| Q |
234 |
ttagaaaagtaaagataaacatacccaaaagtatcataaaaaacaaacgggagcattcca |
293 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||| |
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| T |
2679228 |
ttagaaaagtaaatgtaaacatacccaaaagtatcatgaaaagcaaatgggagcattcca |
2679169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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