View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17235_low_3 (Length: 607)
Name: NF17235_low_3
Description: NF17235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17235_low_3 |
 | |
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| [»] scaffold1079 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 44 - 345
Target Start/End: Complemental strand, 2692995 - 2692694
Alignment:
| Q |
44 |
atggatagatagtttaagaaatagaagataaaaacccggaatgacatgccaccgcatggaatatatttattttttcgataaacaaatatcatcggtacat |
143 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
2692995 |
atggatagatagtttaagaaataaaagataataacccggaatgacatgccaccacatggaatatatttattttttcgatacacaaatatcattggtacat |
2692896 |
T |
|
| Q |
144 |
caagagcataatcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaaccacactttttgtgtttgaattttatttaaaacttagaaaagt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2692895 |
caagagcataatcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaaccacactttttgtgtttgaattttatttaaaacttagaaaagt |
2692796 |
T |
|
| Q |
244 |
aaagataaacatacccaaaagtatcataaaaaacaaacgggagcattccagtacgacgtttatcaacctgaccattcacatggctgtttgaacaagcaat |
343 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2692795 |
aaagataaacatacccaaaagtatcataaaaaacaaacgggagcattccagtacggcgtttatcaacctgaccattcacatggctgtttgaacaagcaat |
2692696 |
T |
|
| Q |
344 |
ag |
345 |
Q |
| |
|
|| |
|
|
| T |
2692695 |
ag |
2692694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 2684647 - 2684504
Alignment:
| Q |
54 |
agtttaagaaatagaagataaaaacccggaatgacatgccaccgcatggaatatatttattttttcgataaacaaatatcatcggtacatcaagagcata |
153 |
Q |
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||||||||||||||||||| | ||||||||||||||||||| || | ||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
2684647 |
agtttaagaaatagaagatta---cccggaatgacatgccaccacaagcaatatatctattttttcgataaataaataccatcggtacatcaagagcata |
2684551 |
T |
|
| Q |
154 |
atcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaa |
200 |
Q |
| |
|
|||| ||| ||||||||||||| | | || |||||| ||||||||| |
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|
| T |
2684550 |
gtcaataaattgctcaaacctgtaggagaagcacacaacaaatcaaa |
2684504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 2692625 - 2692545
Alignment:
| Q |
414 |
tatacaccttctaaagctgacataaccatttggagctccttgcatgaaaggtgaatttgaaaataaggctgttgctaactg |
494 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
2692625 |
tatacaccttctaaagctgacataaccgtttggagctccttgcttgaaaggtgaatttgaaaataaagctgttgctaactg |
2692545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 419 - 494
Target Start/End: Complemental strand, 2679029 - 2678954
Alignment:
| Q |
419 |
accttctaaagctgacataaccatttggagctccttgcatgaaaggtgaatttgaaaataaggctgttgctaactg |
494 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||||||||||| | |||||| || |||| |||||| |
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|
| T |
2679029 |
accttcttaagctgacataaccatttggaactccttgcttgaaaggtgaattcgcaaataatgcagttgataactg |
2678954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 2679228 - 2679169
Alignment:
| Q |
234 |
ttagaaaagtaaagataaacatacccaaaagtatcataaaaaacaaacgggagcattcca |
293 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||| |
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|
| T |
2679228 |
ttagaaaagtaaatgtaaacatacccaaaagtatcatgaaaagcaaatgggagcattcca |
2679169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 493 - 593
Target Start/End: Complemental strand, 40231035 - 40230933
Alignment:
| Q |
493 |
tgattcgacattaaaagtatattgatttttt-cccaataaccgaatacttttgtctgt-aaatattgcatattttattccattcataaatctattttctt |
590 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||| | ||||| ||||||| ||| | ||| |||||||||||||| |
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|
| T |
40231035 |
tgattcgacgttaaaagtgtattgatttttttcccaataaccaaatacttttgtctataaaataccacatatttcattgaactcacaaatctattttctt |
40230936 |
T |
|
| Q |
591 |
ccc |
593 |
Q |
| |
|
||| |
|
|
| T |
40230935 |
ccc |
40230933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 492 - 597
Target Start/End: Original strand, 16899505 - 16899610
Alignment:
| Q |
492 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899505 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
16899604 |
T |
|
| Q |
592 |
cctatg |
597 |
Q |
| |
|
|||||| |
|
|
| T |
16899605 |
cctatg |
16899610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 492 - 597
Target Start/End: Original strand, 18348020 - 18348125
Alignment:
| Q |
492 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18348020 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcattttttattccattcataaatctattttcttc |
18348119 |
T |
|
| Q |
592 |
cctatg |
597 |
Q |
| |
|
|||||| |
|
|
| T |
18348120 |
cctatg |
18348125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 492 - 597
Target Start/End: Complemental strand, 13236471 - 13236366
Alignment:
| Q |
492 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13236471 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcattttttattccattcataaatctattttcttc |
13236372 |
T |
|
| Q |
592 |
cctatg |
597 |
Q |
| |
|
|||||| |
|
|
| T |
13236371 |
cctatg |
13236366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 495 - 597
Target Start/End: Original strand, 10404067 - 10404169
Alignment:
| Q |
495 |
attcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccct |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
10404067 |
attcgacattaaaagtatattgattttttcccaataaccgaatacttttgtttgtaaatattatatattttattccattcataaatctattttcttccct |
10404166 |
T |
|
| Q |
595 |
atg |
597 |
Q |
| |
|
||| |
|
|
| T |
10404167 |
atg |
10404169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 495 - 597
Target Start/End: Complemental strand, 6352442 - 6352341
Alignment:
| Q |
495 |
attcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccct |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
6352442 |
attcgacattaaaagtatattgattttttcccaataat-gaatacttttgtctgtaaatattacatattttattccattcataaatctattttcttccct |
6352344 |
T |
|
| Q |
595 |
atg |
597 |
Q |
| |
|
||| |
|
|
| T |
6352343 |
atg |
6352341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 492 - 597
Target Start/End: Complemental strand, 42203382 - 42203278
Alignment:
| Q |
492 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
591 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
42203382 |
ctgattcgacattaaaagtatattgaatttttac-aataaccgaacacttttgtctgtaaatattgcatatattattccattcataaatctatttttttc |
42203284 |
T |
|
| Q |
592 |
cctatg |
597 |
Q |
| |
|
| |||| |
|
|
| T |
42203283 |
catatg |
42203278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 492 - 597
Target Start/End: Original strand, 512 - 617
Alignment:
| Q |
492 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
591 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||| |
|
|
| T |
512 |
ctgattcgacattagaagtatattgatttttcaccactaaccgaatacttttgtctgtaactactatatatttgattccatccataaatctattttcttc |
611 |
T |
|
| Q |
592 |
cctatg |
597 |
Q |
| |
|
|||||| |
|
|
| T |
612 |
cctatg |
617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 494 - 581
Target Start/End: Complemental strand, 197952 - 197865
Alignment:
| Q |
494 |
gattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatc |
581 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||| ||| ||||| ||||||| |||||||| |
|
|
| T |
197952 |
gattcgacattaaaagtatattgattctttcccaataaacgaagacttttttctgtaaatactgcgtatttgattccatccataaatc |
197865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 494 - 573
Target Start/End: Complemental strand, 256387 - 256308
Alignment:
| Q |
494 |
gattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccatt |
573 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||| ||| ||||| |||||||| |
|
|
| T |
256387 |
gattcgacattaaaagtatattgattctttcccaataaacgaagacttttttctgtaaatactgcgtatttgattccatt |
256308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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