View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17235_low_4 (Length: 460)
Name: NF17235_low_4
Description: NF17235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17235_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 13 - 445
Target Start/End: Original strand, 5322351 - 5322783
Alignment:
| Q |
13 |
aatatccttatcattagttgtcttcccatcggtatatgttattgtgtttggtatatatgcatataataagtgtgtacacgtgtatttataaataggcata |
112 |
Q |
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| T |
5322351 |
aatatctttatcattagttgtcttcccatcggtatatgttattgcatttggtatatatgcatataataagtgtgtacacgtgtatttataaataggcata |
5322450 |
T |
|
| Q |
113 |
acaaataacaagtgaggtttgcattcaactataaatgaaaggtttcataatcatgcctatgtatcaacaccagattcattcaactaaatttatacgggtg |
212 |
Q |
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| T |
5322451 |
acaaataacaagtgaggtttgcattcaactataaatgaaaggtttcataatcatgcctatgtatcaacaccagattcattcaactaaatttatacgggtg |
5322550 |
T |
|
| Q |
213 |
acacataatctacacacatatcccaggtgtataaatgatggatatgaaataactctaaattgaattttataaataattgagtggatatacctgattataa |
312 |
Q |
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| T |
5322551 |
aagcataatctacacacatatcccaggtgtataaatgatggatatgaaataactctaaattgaattttataaataattgaatggatatacctgattataa |
5322650 |
T |
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| Q |
313 |
gacttgatagtgttagttgccttgtaaatttcatattccatggtctgtccccaaggaaaattaacccatgatctcaaagtgctgagatctgtcaggtcgt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5322651 |
gacttgatagtgttagttgccttgtaaatttcatattccatggtctgtccccaaggaaaattaacccatgatctcaaagtgctgagatctgtcaggtcgt |
5322750 |
T |
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| Q |
413 |
gagttggcaactgagaagcattacttacatgat |
445 |
Q |
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| T |
5322751 |
gagttggcaactgagaagcattacttacatgat |
5322783 |
T |
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