View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17235_low_5 (Length: 443)
Name: NF17235_low_5
Description: NF17235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17235_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 6568094 - 6568528
Alignment:
| Q |
1 |
atcaccactgacctctctgatgccaactgtgtcaccctctccattaatgtaaggttgatcaagtatatatagaacaatgtcaaatggaaattaaatagga |
100 |
Q |
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| T |
6568094 |
atcaccactgacctctctgatgccaactgtgtcaccctctccattaatgtaaggttgatcaagtatatatagaacaatgtcaaatggaaattaaatagga |
6568193 |
T |
|
| Q |
101 |
aataatgtgtgaaggagttacttggtttgtttgatgtatgtttgaggcaattgagaatttcttatataaggatttgaggaaggtgtttggttgcttaaat |
200 |
Q |
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| T |
6568194 |
aataatgtgtgaaggagttacttggtttgtttgatgtatgtttgaggcaattgagaatttcttatataaggatttgaggaaggtgtttggttgcttaaat |
6568293 |
T |
|
| Q |
201 |
tgcttttttgtggattgacatgcatccataagagagtgtggctgaggtgaaaagatgagaatgttccattagatatttgagtcggtttctactttgaaca |
300 |
Q |
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| T |
6568294 |
tgcttttttgtggattgacatgcatccataagagagtgtggctgaggtgaaaagatgagaatgttccattagatatttgagtcggtttctactttgaaca |
6568393 |
T |
|
| Q |
301 |
tacaattgtatgaaagtgatgtatgtattctatgcaagcaattagaacaaattaattaagacatgtccttggtacggctttcc--nnnnnnnttttaaga |
398 |
Q |
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| T |
6568394 |
tacaattgtatgaaagtgatgtatgtattctatgcaagcaattagaacaaattaattaagacatgtccttggtacggctttccaatttttttttttaaga |
6568493 |
T |
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| Q |
399 |
aacttgtgcattacatttcccctacctttgcttct |
433 |
Q |
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| T |
6568494 |
aacttgtgcattacatttcccctacttttgtttct |
6568528 |
T |
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