View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17235_low_6 (Length: 316)
Name: NF17235_low_6
Description: NF17235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17235_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 6568099 - 6567803
Alignment:
| Q |
1 |
ggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatgaacttgatgagatg |
100 |
Q |
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| T |
6568099 |
ggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatgaacttgatgagatg |
6568000 |
T |
|
| Q |
101 |
agtggagggagagacattgaacaagcacttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagcttgttggtggagctaatg |
200 |
Q |
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| T |
6567999 |
agtggagggagagacattgaacaagcacttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagcttgttggtggagctaatg |
6567900 |
T |
|
| Q |
201 |
aagttatgagccttcaccttaataggtctctgattccaatgcttagaagagcaggagctatttgggtttgattaattgaactctcataatactatat |
297 |
Q |
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| T |
6567899 |
aagttatgagccttcaccttaataggtctctgattccaatgcttagaagagcaggagctatttgggtttgattaattgaactctcataatactatat |
6567803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49289829 - 49290053
Alignment:
| Q |
1 |
ggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatgaacttgatgagatg |
100 |
Q |
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||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| |||||||||||||||| |
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| T |
49289829 |
ggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagata |
49289928 |
T |
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| Q |
101 |
agtggagggagagacattgaacaagcac---ttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagcttgttggtggagcta |
197 |
Q |
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| T |
49289929 |
ccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagcca |
49290028 |
T |
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| Q |
198 |
atgaagttatgagccttcaccttaa |
222 |
Q |
| |
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|| |||||||||| ||||| ||||| |
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| T |
49290029 |
atcaagttatgagtcttcatcttaa |
49290053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49296780 - 49297004
Alignment:
| Q |
1 |
ggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatgaacttgatgagatg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| |||||||||||||||| |
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| T |
49296780 |
ggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagata |
49296879 |
T |
|
| Q |
101 |
agtggagggagagacattgaacaagcac---ttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagcttgttggtggagcta |
197 |
Q |
| |
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|||||||||| ||||||||||||| ||| ||| || || | | || ||||| || |||| ||||||||||||||||||||||||||||| | |
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| T |
49296880 |
ccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagcca |
49296979 |
T |
|
| Q |
198 |
atgaagttatgagccttcaccttaa |
222 |
Q |
| |
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|| |||||||||| ||||| ||||| |
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| T |
49296980 |
atcaagttatgagtcttcatcttaa |
49297004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49303510 - 49303734
Alignment:
| Q |
1 |
ggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatgaacttgatgagatg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| |||||||||||||||| |
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| T |
49303510 |
ggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagata |
49303609 |
T |
|
| Q |
101 |
agtggagggagagacattgaacaagcac---ttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagcttgttggtggagcta |
197 |
Q |
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|||||||||| ||||||||||||| ||| ||| || || | | || ||||| || |||| ||||||||||||||||||||||||||||| | |
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| T |
49303610 |
ccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagcca |
49303709 |
T |
|
| Q |
198 |
atgaagttatgagccttcaccttaa |
222 |
Q |
| |
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|| |||||||||| ||||| ||||| |
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| T |
49303710 |
atcaagttatgagtcttcatcttaa |
49303734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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