View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17235_low_7 (Length: 264)
Name: NF17235_low_7
Description: NF17235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17235_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 45389506 - 45389753
Alignment:
| Q |
17 |
aatattttcccattggatatatggattttaaattttggcattgttgacggtaccaggacgagatgtaacttgaattgtgtttataagtaaaagacaacat |
116 |
Q |
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| T |
45389506 |
aatattttcccattggatatatggattttaaattttggcattgttgacggtaccaggacaagatgtaacttgaattgtgtttataagtaaaagacaacat |
45389605 |
T |
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| Q |
117 |
ccctcaccgtataattgcgttagttccactcaaatttaaaaatgctactaatttttatccaagattcattggatcactcgctatcgaaccactctgaccg |
216 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
45389606 |
ccctcaccgtatagttgcgttagctccactcaaatttaaaaatgctactaatttttatccaagattcattggatcactcgctatcgaatcactcagaccg |
45389705 |
T |
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| Q |
217 |
cactcaagatatttagtcttggacatgaatgaatgtattgggtccctc |
264 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45389706 |
cacttaagatatttagtcttggacatgaatgaatgtattgagtccctc |
45389753 |
T |
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