View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17235_low_8 (Length: 264)

Name: NF17235_low_8
Description: NF17235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17235_low_8
NF17235_low_8
[»] chr5 (11 HSPs)
chr5 (13-252)||(38988158-38988397)
chr5 (74-252)||(40418736-40418914)
chr5 (74-238)||(39880295-39880459)
chr5 (74-252)||(1163196-1163355)
chr5 (204-248)||(39169291-39169335)
chr5 (17-60)||(40412189-40412232)
chr5 (128-181)||(1850384-1850437)
chr5 (128-181)||(3300018-3300071)
chr5 (128-181)||(3392911-3392964)
chr5 (14-66)||(40419086-40419138)
chr5 (203-238)||(39726904-39726939)
[»] chr4 (3 HSPs)
chr4 (74-238)||(25911731-25911901)
chr4 (78-252)||(44444232-44444417)
chr4 (16-66)||(25911486-25911536)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 38988397 - 38988158
Alignment:
Q  13 aatataacagatccacaaaatatttaaacccagcacaggaatgaatccatataacagatccacaggcatggtttgggaagcaagatcaacacacataact 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38988397 aatataacagatccacaaaatatttaaacccagcacaggaatgaatccatataacagatccacaggcatggtttgggaagcaagatcaacacacataact 38988298  T
Q  113 tgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcacttgttcttgtcatttgaataaacataaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38988297 tgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcacttgttcttgtcatttgaataaacataaa 38988198  T
Q  213 catgaaacagaaattgcaaatagaaagaacctaataaatg 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38988197 catgaaacagaaattgcaaatagaaagaacctaataaatg 38988158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 74 - 252
Target Start/End: Complemental strand, 40418914 - 40418736
Alignment:
Q  74 acaggcatggtttgggaagcaagatcaacacacataacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgcagcaacctaa 173  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40418914 acaggcatggtttgtgaagcacgatcaacacacgtaacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgcagcaacctaa 40418815  T
Q  174 gtgaaaagcacttgttcttgtcatttgaataaacataaacatgaaacagaaattgcaaatagaaagaacctaataaatg 252  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40418814 gtgaaaagcacttgttcttgtcattggaataaacataaacatgaaacaaaaattgcaaatagaaagaacctaataaatg 40418736  T

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Target: chr5; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 39880459 - 39880295
Alignment:
Q  74 acaggcatggtttgggaagcaagatcaacacacataacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgcagcaacctaa 173  Q
    |||| |||| |||||||||||||||||||||||  ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39880459 acagacatgttttgggaagcaagatcaacacacggaacatattcttgtgatcggaataaacataaatatcaaacagaaattgcaaactgcagcaacctaa 39880360  T
Q  174 gtgaaaagcacttgttcttgtcatttgaataaacataaacatgaaacagaaattgcaaatagaaa 238  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  39880359 gtgaaaagcacttgttcttgtcattggaataaacataaacattaaacagaaattgcaaatagaaa 39880295  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 252
Target Start/End: Original strand, 1163196 - 1163355
Alignment:
Q  74 acaggcatggtttgggaagcaagatcaacacacataacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgcagcaacctaa 173  Q
    ||||||||||||||||||||| |||||||||||||||||||||||         |||||||||||||||||||||||||||||||| |||| |||  |||    
T  1163196 acaggcatggtttgggaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgcaacaaagtaa 1163286  T
Q  174 gtgaaaagcacttgttcttgtcatttgaataaacataaacatgaaacagaaattgcaaatagaaagaacctaataaatg 252  Q
    |          |||||||||| ||  |||||||||||||||||||| |||||  ||||||| ||| || ||||||||||    
T  1163287 g----------ttgttcttgttatcggaataaacataaacatgaaatagaaacagcaaatataaaaaagctaataaatg 1163355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 39169335 - 39169291
Alignment:
Q  204 aaacataaacatgaaacagaaattgcaaatagaaagaacctaata 248  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  39169335 aaacataaacatgaaacagaaattgcaaattgaaagaacctaata 39169291  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 40412232 - 40412189
Alignment:
Q  17 taacagatccacaaaatatttaaacccagcacaggaatgaatcc 60  Q
    ||||||||||||||||||||| || |||||||||||||||||||    
T  40412232 taacagatccacaaaatatttcaatccagcacaggaatgaatcc 40412189  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 1850437 - 1850384
Alignment:
Q  128 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaag 181  Q
    |||||||||||||||||||||||||||| ||| |||| |||  |||||||||||    
T  1850437 aataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagtgaaaag 1850384  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 3300071 - 3300018
Alignment:
Q  128 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaag 181  Q
    |||||||||||||||||||||||||||||||| |||| ||   |||||||||||    
T  3300071 aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaag 3300018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 3392964 - 3392911
Alignment:
Q  128 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaag 181  Q
    |||||||||||||||||||||||||||||||| |||| ||   |||||||||||    
T  3392964 aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaag 3392911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 40419138 - 40419086
Alignment:
Q  14 atataacagatccacaaaatatttaaacccagcacaggaatgaatccatataa 66  Q
    |||||||||||||||||||||||| ||  |||||||||||| |||| ||||||    
T  40419138 atataacagatccacaaaatatttcaattcagcacaggaattaatcaatataa 40419086  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 39726939 - 39726904
Alignment:
Q  203 taaacataaacatgaaacagaaattgcaaatagaaa 238  Q
    ||||||||||||| ||||||||||||||||||||||    
T  39726939 taaacataaacattaaacagaaattgcaaatagaaa 39726904  T

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Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 25911731 - 25911901
Alignment:
Q  74 acaggcatggtttgggaagcaagatcaacacacataacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgcagcaacctaa 173  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25911731 acagacatggtttgggaagcatgatcaacacacgtaacttgttcttgtaatcggaataaacataagtatcaaacagaaattgcaaactgcagcaacctaa 25911830  T
Q  174 gtgaaaagcacttgttcttgtcatttga------ataaacataaacatgaaacagaaattgcaaatagaaa 238  Q
     |||||||||||| || ||||||||  |      |||||||||||||||||||||||||||||||||||||    
T  25911831 ttgaaaagcacttattattgtcattgaaataaacataaacataaacatgaaacagaaattgcaaatagaaa 25911901  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 78 - 252
Target Start/End: Original strand, 44444232 - 44444417
Alignment:
Q  78 gcatggtttgggaagcaagatcaacacacataacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtga 177  Q
    ||||||||||||||||| ||  ||||||| ||||||||||||||| || |||||||||||||||| ||| | |||||||||| || ||||||||| ||||    
T  44444232 gcatggtttgggaagcacgagtaacacacgtaacttgttcttgtagtcagaataaacataaatattaaagataaattgcaaattgtagcaacctaggtga 44444331  T
Q  178 aaagcac-----------ttgttcttgtcatttgaataaacataaacatgaaacagaaattgcaaatagaaagaacctaataaatg 252  Q
     ||||||           ||||||||||||||  |||||||||||||||| |||| ||||| |||||||||| |||||||||||||    
T  44444332 taagcaccttttttctttttgttcttgtcattgtaataaacataaacatggaacaaaaattacaaatagaaataacctaataaatg 44444417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 25911486 - 25911536
Alignment:
Q  16 ataacagatccacaaaatatttaaacccagcacaggaatgaatccatataa 66  Q
    ||||||||||| |||||||||| || |||||||||||||||||||||||||    
T  25911486 ataacagatccccaaaatatttcaatccagcacaggaatgaatccatataa 25911536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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