View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17236_high_2 (Length: 232)
Name: NF17236_high_2
Description: NF17236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17236_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 50422152 - 50421955
Alignment:
| Q |
17 |
acaatacaggtgtgtactactggaagatgcagatgtatcaaaagcattgattgaatatgcctctcggacgggaattgagcatttggttcttggctcctca |
116 |
Q |
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| T |
50422152 |
acaatacaggtgtgtactactggaagatgcagatgtatcaaaagcattgattgaatatgcctctcggacgggaattgagcatttggttcttggctcctca |
50422053 |
T |
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| Q |
117 |
acaagagctaatttgcttgagtatgcatctatttttataagtagcatagcatgcatgttgcaaagtttacttttaacttctagttttctaccatactctc |
216 |
Q |
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| T |
50422052 |
acaagagctaatttgcttgagtatgcatctatttttataagtagcatag----catgttgcaaagtttacttttagcttctagttttctaccatactttc |
50421957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 50442372 - 50442242
Alignment:
| Q |
29 |
tgtactactggaagatgcagatgtatcaaaagcattgattgaatatgcctctcggacgggaattgagcatttggttcttggctcctcaacaagagctaat |
128 |
Q |
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| T |
50442372 |
tgtactactagaagatgcagatgtgtcaaaagcgttgattgaatatgcttcgcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagt |
50442273 |
T |
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| Q |
129 |
ttgcttgagtatgcatctatttttataagta |
159 |
Q |
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| T |
50442272 |
ttgctcaagtatacatccatttctctaagta |
50442242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 50447272 - 50447139
Alignment:
| Q |
30 |
gtactactggaagatgcagatgtatcaaaagcattgattgaatatgcctctcggacgggaattgagcatttggttcttggctcctcaacaagagctaatt |
129 |
Q |
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| T |
50447272 |
gtactactagaagatgcagatgtatcaaaggcattgattgaatatgcttctcaagtaggaattgagcatctgattcttggctcttcagcaaaaactagtt |
50447173 |
T |
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| Q |
130 |
tgcttgagtatgcatctatttttataagtagcat |
163 |
Q |
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| T |
50447172 |
tgcacaagtatgcatccattttcctaagtagcat |
50447139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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