View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17236_low_1 (Length: 634)

Name: NF17236_low_1
Description: NF17236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17236_low_1
NF17236_low_1
[»] chr5 (8 HSPs)
chr5 (133-605)||(25937967-25938432)
chr5 (21-123)||(25938805-25938907)
chr5 (550-601)||(14667765-14667816)
chr5 (534-601)||(31636133-31636200)
chr5 (534-601)||(33667218-33667285)
chr5 (528-596)||(36123399-36123466)
chr5 (504-588)||(42199301-42199385)
chr5 (530-601)||(43558036-43558107)
[»] chr1 (8 HSPs)
chr1 (438-601)||(48431523-48431686)
chr1 (534-601)||(2544601-2544668)
chr1 (530-601)||(32231163-32231234)
chr1 (509-601)||(43423721-43423813)
chr1 (530-601)||(3819065-3819136)
chr1 (547-600)||(14226055-14226108)
chr1 (559-596)||(52837532-52837569)
chr1 (437-493)||(32404642-32404698)
[»] chr7 (14 HSPs)
chr7 (351-600)||(28627963-28628212)
chr7 (530-601)||(47848676-47848747)
chr7 (530-585)||(35713713-35713768)
chr7 (530-601)||(36514416-36514487)
chr7 (534-596)||(14593772-14593834)
chr7 (537-601)||(36136766-36136830)
chr7 (509-601)||(42187472-42187564)
chr7 (534-601)||(33072954-33073021)
chr7 (534-601)||(39906583-39906650)
chr7 (535-601)||(5335922-5335988)
chr7 (534-596)||(16013295-16013357)
chr7 (534-600)||(25579290-25579356)
chr7 (531-601)||(43282410-43282480)
chr7 (533-601)||(38920796-38920864)
[»] chr2 (9 HSPs)
chr2 (437-601)||(12141546-12141710)
chr2 (504-601)||(23714444-23714541)
chr2 (504-601)||(24102116-24102213)
chr2 (532-599)||(40759104-40759171)
chr2 (534-601)||(43752160-43752227)
chr2 (547-601)||(11412723-11412777)
chr2 (551-601)||(18958909-18958959)
chr2 (444-493)||(13592421-13592470)
chr2 (530-601)||(38434953-38435025)
[»] chr4 (14 HSPs)
chr4 (500-596)||(26356626-26356722)
chr4 (509-601)||(54470209-54470301)
chr4 (530-601)||(28236185-28236256)
chr4 (534-601)||(35555860-35555927)
chr4 (534-601)||(41192838-41192905)
chr4 (322-388)||(25427863-25427929)
chr4 (530-588)||(45185236-45185294)
chr4 (504-598)||(46715555-46715649)
chr4 (504-601)||(28497492-28497588)
chr4 (534-601)||(436231-436298)
chr4 (530-601)||(30621413-30621484)
chr4 (547-601)||(31459032-31459086)
chr4 (322-375)||(1211393-1211446)
chr4 (438-522)||(28351640-28351724)
[»] scaffold0018 (1 HSPs)
scaffold0018 (534-601)||(44081-44148)
[»] chr3 (7 HSPs)
chr3 (534-601)||(49503767-49503834)
chr3 (534-601)||(50960846-50960913)
chr3 (534-601)||(21200552-21200617)
chr3 (534-601)||(54128380-54128447)
chr3 (504-601)||(34719255-34719352)
chr3 (533-601)||(3987049-3987117)
chr3 (537-601)||(28245439-28245503)
[»] chr6 (5 HSPs)
chr6 (528-601)||(31818534-31818606)
chr6 (534-601)||(21352050-21352117)
chr6 (534-601)||(33084060-33084127)
chr6 (444-493)||(25493973-25494022)
chr6 (509-601)||(2079342-2079434)
[»] chr8 (5 HSPs)
chr8 (534-601)||(36143367-36143434)
chr8 (534-601)||(45419239-45419306)
chr8 (536-601)||(9695633-9695698)
chr8 (534-603)||(12491351-12491420)
chr8 (545-598)||(13171873-13171926)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 133 - 605
Target Start/End: Complemental strand, 25938432 - 25937967
Alignment:
Q  133 agagaagaccaaacgaagagaaaatgatgaggcgaaaatctacaagggagagaggcatcaaagaagtagatatggagttcatcatcaacaccatctccat 232  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25938432 agagaagaccaaatgaatagaaaatgatgaggcgaaaatctacaagggagagaggcatcaaagaagtagatatggagttcatcatcaacaccatctccat 25938333  T
Q  233 attaaaataaatgtgagatgcctttttctctccccatatgcatcagtgtaaggtgatattagaatgaccattatttttctatactaccgcaaccacaacc 332  Q
    ||||||||||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||    |||||||||||   ||||| ||||||    
T  25938332 attaaaataaatgtgggatgcccttttctctccccatatgcatcactgtaaggtgaaattagaatgacca----ttttctatact---gcaacaacaacc 25938240  T
Q  333 aagttttatctcattatatggagtcggctacatgaatcaaattacagcgtagtgttatgttataagccatatttgaattcaacttaatgatctctgannn 432  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||||| | |||||||| |       
T  25938239 aagtcttatctcactatgtggagtcggctacatgaatcaaattacaacgtagtgttatgtcataaactatatttgaattcaactcagtgatctctaaaaa 25938140  T
Q  433 nnnnctaatattttctcttatagttagtctaggtcttcctttacatcttgtaatatgactaagtttaatccgatcaactctccttactacctatccaaca 532  Q
        |||||| ||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||| |||| |||||||||||||| || ||||||    
T  25938139 atttctaatagtttctcttatagttagtctaggtattcctttacctcttgtaatatggctatgtttaatctgatctactctccttactacataaccaaca 25938040  T
Q  533 agtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctaccagaa 605  Q
    | | ||||||| |||||| |||| |||||||  || |||||||||||||||||||| |||| |||||| ||||    
T  25938039 aattttctctctatatgctcaaaccacctaaacctttcttccaccattttttctactatagatgctacaagaa 25937967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 25938907 - 25938805
Alignment:
Q  21 tccgtgttgtttaccaaatcgtcatcagtttgccagtattataatgtctaagcatacaactagaataactcttctagatttatcaagatctggctaacta 120  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25938907 tccgtgttgtttaccaaatcgtgatcagtttaccagtattataatgtctaagcatacaactagaataactcttctagatttatcaagatctggctaacta 25938808  T
Q  121 tta 123  Q
    |||    
T  25938807 tta 25938805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 601
Target Start/End: Complemental strand, 14667816 - 14667765
Alignment:
Q  550 cccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||| ||||||||||||| ||||||||| |||||||| ||||||||||||    
T  14667816 cccaaaccacctaagtctattttccaccatcttttctactataggtgctacc 14667765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 31636133 - 31636200
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | ||||||||| ||||||||||||  ||| ||||| |||||||| ||||||||||||    
T  31636133 gtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctacc 31636200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 33667285 - 33667218
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | ||||||||| ||||||||||||  ||| ||||| |||||||| ||||||||||||    
T  33667285 gtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctacc 33667218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 596
Target Start/End: Original strand, 36123399 - 36123466
Alignment:
Q  528 caacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtg 596  Q
    ||||| |||||||||| | |||||||||||||||||||| |  ||| |||| |||||||||||||||||    
T  36123399 caacacgtcttctctctacatgcccaaatcacctaagtcgagtttctacca-tttttctacaataggtg 36123466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 588
Target Start/End: Complemental strand, 42199385 - 42199301
Alignment:
Q  504 gatcaactctccttactacctatccaacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctac 588  Q
    |||| ||||||||||||||  |  | ||| |||||||||| | ||||||||| ||||||||||||  ||||||||| ||||||||    
T  42199385 gatctactctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctac 42199301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 601
Target Start/End: Original strand, 43558036 - 43558107
Alignment:
Q  530 acaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||||||| ||||||||||| ||||||||  ||  ||||||||| |||||||  |||| |||||||    
T  43558036 acaagtcttctctctatatgcccaaaccacctaagcttagtttccaccatcttttctattatagatgctacc 43558107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 438 - 601
Target Start/End: Original strand, 48431523 - 48431686
Alignment:
Q  438 taatattttctcttatagttagtctaggtcttcctttacatcttgtaatatgactaagtttaatccgatcaactctccttactacctatccaacaagtct 537  Q
    ||||| ||||||||||||||  | | ||||||||| ||| |||||||||  |||||   |  ||| ||||||||||| |||||||  |  | ||||||||    
T  48431523 taatagtttctcttatagtttttttgggtcttcctctacctcttgtaatccgactatcctccatctgatcaactctctttactacaaaatctacaagtct 48431622  T
Q  538 tctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||| | ||||||||| |||||||| |||| ||||||||| |||||||| ||||| ||||||    
T  48431623 tctctctacatgcccaaaccacctaagcctattttccaccatcttttctactataggggctacc 48431686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 2544668 - 2544601
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | ||| ||||| ||||||||||| | ||||||||| |||||||| ||||||||||||    
T  2544668 gtcttctctctacatgtccaaaccacctaagtctgttttccaccatcttttctactataggtgctacc 2544601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 601
Target Start/End: Original strand, 32231163 - 32231234
Alignment:
Q  530 acaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||||||| | ||||||||| || ||||| |||| ||| |||| ||||||||| ||||||||||||    
T  32231163 acaagtcttctctctacatgcccaaaccatctaagcctattttctaccaatttttctactataggtgctacc 32231234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 601
Target Start/End: Complemental strand, 43423813 - 43423721
Alignment:
Q  509 actctccttactacctatccaacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||| |||||||| ||  | |||||||||||||| | ||| ||||| |||||||| |||  ||||||||| |||||||| ||||||| ||||    
T  43423813 actctacttactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgttacc 43423721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 601
Target Start/End: Original strand, 3819065 - 3819136
Alignment:
Q  530 acaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||||||||| || | ||||||||| ||| ||||||||  | ||||||| |||||||| ||||||||||||    
T  3819065 acaagtcttctttctacatgcccaaaccacttaagtctagttaccaccatcttttctaccataggtgctacc 3819136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 600
Target Start/End: Original strand, 14226055 - 14226108
Alignment:
Q  547 atgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctac 600  Q
    ||||||||| |||||||| |||| ||||||||| |||||||  |||||||||||    
T  14226055 atgcccaaaccacctaagcctattttccaccatcttttctatgataggtgctac 14226108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 596
Target Start/End: Complemental strand, 52837569 - 52837532
Alignment:
Q  559 cctaagtctatcttccaccattttttctacaataggtg 596  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  52837569 cctaagtctattttccaccatttattctacaataggtg 52837532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 493
Target Start/End: Original strand, 32404642 - 32404698
Alignment:
Q  437 ctaatattttctcttatagttagtctaggtcttcctttacatcttgtaatatgacta 493  Q
    |||||| ||||||||||||||  | ||||||||||| ||| |||||| |||||||||    
T  32404642 ctaatagtttctcttatagtttttgtaggtcttcctctacctcttgtgatatgacta 32404698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 351 - 600
Target Start/End: Original strand, 28627963 - 28628212
Alignment:
Q  351 tggagtcggctacatgaatcaaattacagcgtagtgttatgttataagccatatttgaattcaacttaatgatctctgannnnnnnctaatattttctct 450  Q
    |||||||||||||||| ||||||||||  | || |||| | | |||| ||| ||||| || ||||| | | |||||| |       |||||| |||||||    
T  28627963 tggagtcggctacatggatcaaattacgccataatgttctatcataaaccacatttgcatccaactcattaatctctaaatctttcctaatagtttctct 28628062  T
Q  451 tatagttagtctaggtcttcctttacatcttgtaatatgactaagtttaatccgatcaactctccttactacctatccaacaagtcttctctcaatatgc 550  Q
    |||||||  ||||||||||||| ||| |||||| || ||||||   |  ||| |||| |||||||||||||| ||  | ||| || ||||||  | ||||    
T  28628063 tatagtttttctaggtcttcctctacctcttgtgatttgactatcctccatcggatctactctccttactacataatctacaggttttctctttacatgc 28628162  T
Q  551 ccaaatcacctaagtctatcttccaccattttttctacaataggtgctac 600  Q
    ||||| |||||||| | || |||||||||  |||||||  ||||||||||    
T  28628163 ccaaaccacctaagccaattttccaccatcatttctactctaggtgctac 28628212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 530 - 601
Target Start/End: Complemental strand, 47848747 - 47848676
Alignment:
Q  530 acaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||||||| | ||||||||| |||||||| |||| ||||||||| |||||||| ||||| ||||||    
T  47848747 acaagtcttctctcgacatgcccaaaccacctaagcctattttccaccatcttttctactataggcgctacc 47848676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 585
Target Start/End: Complemental strand, 35713768 - 35713713
Alignment:
Q  530 acaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttc 585  Q
    |||||||||||||| | ||||||||| |||||||| |||| |||||||||||||||    
T  35713768 acaagtcttctctctacatgcccaaaccacctaagcctattttccaccattttttc 35713713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 601
Target Start/End: Original strand, 36514416 - 36514487
Alignment:
Q  530 acaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||||| |||||| | ||||||||| ||||||||||||  ||| ||||| |||||||| ||||||||||||    
T  36514416 acaagtcgtctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctacc 36514487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 534 - 596
Target Start/End: Complemental strand, 14593834 - 14593772
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtg 596  Q
    |||||||| | | ||||||||||||||||||||||  ||| |||||||||||||| |||||||    
T  14593834 gtcttctcactacatgcccaaatcacctaagtctagtttctaccattttttctactataggtg 14593772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 601
Target Start/End: Complemental strand, 36136830 - 36136766
Alignment:
Q  537 ttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||||| |||||||||||  ||||||| |||| ||| ||||| |||||||| ||||||||||||    
T  36136830 ttctctctatatgcccaaacaacctaagactattttctaccatcttttctactataggtgctacc 36136766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 601
Target Start/End: Complemental strand, 42187564 - 42187472
Alignment:
Q  509 actctccttactacctatccaacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||||||| ||  | ||| | |||||||  | ||||||||| |||||||| |||| ||||||||| |||||||  ||||||||||||    
T  42187564 actctccttactacataatctacaggccttctctttacatgcccaaaccacctaagcctattttccaccatcttttctattataggtgctacc 42187472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 33073021 - 33072954
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | |||||||||||| ||||| |||| ||| ||||  |||||||| ||||||||||||    
T  33073021 gtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgctacc 33072954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 39906583 - 39906650
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | |||||||||||| ||||| |||| ||| ||||  |||||||| ||||||||||||    
T  39906583 gtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgctacc 39906650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 601
Target Start/End: Complemental strand, 5335988 - 5335922
Alignment:
Q  535 tcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||||||| ||||||||||| ||||||||||||  ||| ||||| ||| |||| |||| |||||||    
T  5335988 tcttctctctatatgcccaaaccacctaagtctagtttcgaccatctttcctactatagatgctacc 5335922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 596
Target Start/End: Complemental strand, 16013357 - 16013295
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtg 596  Q
    |||||||| | | ||||||||||||||||||||||  ||| |||||||||| ||| |||||||    
T  16013357 gtcttctcactacatgcccaaatcacctaagtctagtttctaccattttttgtactataggtg 16013295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 600
Target Start/End: Original strand, 25579290 - 25579356
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctac 600  Q
    |||||||||| | || |||||| |||||||| |||| |||||||||||||||| | || ||||||||    
T  25579290 gtcttctctctacatccccaaaccacctaagcctattttccaccattttttctgctatgggtgctac 25579356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 531 - 601
Target Start/End: Complemental strand, 43282480 - 43282410
Alignment:
Q  531 caagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||||||||||| | |||||||| ||||||||| |||  |||||||   |||||||| ||||||||||||    
T  43282480 caagtcttctctctacatgcccaattcacctaagcctagtttccaccgacttttctactataggtgctacc 43282410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 601
Target Start/End: Complemental strand, 38920864 - 38920796
Alignment:
Q  533 agtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||| |||||| | ||||||||| ||| |||| |||  ||||||||| |||||||| ||||||||||||    
T  38920864 agtcatctctctacatgcccaaaccacttaagcctagtttccaccatcttttctactataggtgctacc 38920796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 437 - 601
Target Start/End: Complemental strand, 12141710 - 12141546
Alignment:
Q  437 ctaatattttctcttatagttagtctaggtcttcctttacatcttgtaatatgactaagtttaatccgatcaactctccttactacctatccaacaagtc 536  Q
    |||||| |||||| ||||| |  ||||||||||||| ||| ||||||||| ||||||   | |||| |||| |||||||||||||   |  | ||| |||    
T  12141710 ctaatagtttctcctatagcttttctaggtcttcctctacctcttgtaatttgactatcctcaatctgatctactctccttactagagaatctacaggtc 12141611  T
Q  537 ttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||| || |  |||||||| |||||||| || | ||||||||| |||||||| ||||||||||||    
T  12141610 ttctttctacgtgcccaaaccacctaagcctcttttccaccatcttttctactataggtgctacc 12141546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 504 - 601
Target Start/End: Original strand, 23714444 - 23714541
Alignment:
Q  504 gatcaactctccttactacctatccaacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||| |||||||||||||| ||  | |||||||||||||| | ||||| |||  || ||||||||  ||||||||| |||||||| ||| ||||||||    
T  23714444 gatctactctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgctacc 23714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 504 - 601
Target Start/End: Original strand, 24102116 - 24102213
Alignment:
Q  504 gatcaactctccttactacctatccaacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||| |||||||||||||| ||  | |||||||||||||| | ||||| |||  || ||||||||  ||||||||| |||||||| ||| ||||||||    
T  24102116 gatctactctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgctacc 24102213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 599
Target Start/End: Complemental strand, 40759171 - 40759104
Alignment:
Q  532 aagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgcta 599  Q
    |||||||||||| | |||| |||| ||||||| ||||  |||||||||||||||||| ||| ||||||    
T  40759171 aagtcttctctctacatgcacaaaccacctaactctagtttccaccattttttctactataagtgcta 40759104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 43752160 - 43752227
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | ||| |||||||||||||| |||| ||| ||||  |||||||| ||||||||||||    
T  43752160 gtcttctctctacatgtccaaatcacctaagcctattttctaccaccttttctactataggtgctacc 43752227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 601
Target Start/End: Complemental strand, 11412777 - 11412723
Alignment:
Q  547 atgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||  ||||||| |||| ||||||||| |||||||| ||||||||||||    
T  11412777 atgcccaaacaacctaagcctattttccaccatattttctactataggtgctacc 11412723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 601
Target Start/End: Complemental strand, 18958959 - 18958909
Alignment:
Q  551 ccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||| |||||||| |||| ||||||||| |||||||| ||||||||||||    
T  18958959 ccaaaccacctaagcctattttccaccatcttttctactataggtgctacc 18958909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 13592421 - 13592470
Alignment:
Q  444 tttctcttatagttagtctaggtcttcctttacatcttgtaatatgacta 493  Q
    ||||||||||||||  ||||||||||||| ||| ||||| ||||||||||    
T  13592421 tttctcttatagttcttctaggtcttcctatacctcttgaaatatgacta 13592470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 601
Target Start/End: Complemental strand, 38435025 - 38434953
Alignment:
Q  530 acaagtcttctctcaatatgcccaaatcacctaa-gtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||||||  | ||||||||| |||| || |||||  ||||||||| |||||||| ||||||||||||    
T  38435025 acaagtcttctctttacatgcccaaaccacccaaagtctagtttccaccatcttttctactataggtgctacc 38434953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 500 - 596
Target Start/End: Complemental strand, 26356722 - 26356626
Alignment:
Q  500 atccgatcaactctccttactacctatccaacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtg 596  Q
    |||||||| ||||||||||||||    || ||| |||||||||| |  |||||||| ||||||||||||| ||| ||||| |||||||| |||||||    
T  26356722 atccgatctactctccttactacaatacccacatgtcttctctctaagtgcccaaaccacctaagtctattttctaccatcttttctactataggtg 26356626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 509 - 601
Target Start/End: Complemental strand, 54470301 - 54470209
Alignment:
Q  509 actctccttactacctatccaacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||||||| ||    ||| |||||||||| | ||||||||| ||| ||||||||  ||||||||| |||||||| ||||||||||||    
T  54470301 actctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgctacc 54470209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 601
Target Start/End: Complemental strand, 28236256 - 28236185
Alignment:
Q  530 acaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||||||| | ||||||||| || ||||| |||| ||||||||  |||||||| ||||||||||||    
T  28236256 acaagtcttctctctacatgcccaaaccatctaagcctattttccaccaacttttctactataggtgctacc 28236185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 35555860 - 35555927
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | ||||||||| ||||||||||||  ||| ||||| |||||||| ||||||||||||    
T  35555860 gtcttctctctaaatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctacc 35555927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 41192905 - 41192838
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | |||| |||||||||||||||||  ||||||||| ||||||||  |||||||||||    
T  41192905 gtcttctctctacatgcacaaatcacctaagtctagtttccaccatcttttctactgtaggtgctacc 41192838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 25427863 - 25427929
Alignment:
Q  322 caaccacaaccaagttttatctcattatatggagtcggctacatgaatcaaattacagcgtagtgtt 388  Q
    |||| |||||||||| |||||||||||  ||| ||||| |||||| ||||||||||| |||||||||    
T  25427863 caacaacaaccaagtcttatctcattaagtggggtcggttacatggatcaaattacaccgtagtgtt 25427929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 588
Target Start/End: Original strand, 45185236 - 45185294
Alignment:
Q  530 acaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctac 588  Q
    ||||||||| |||| |||||||||||||||||||| ||||  |||||||| ||||||||    
T  45185236 acaagtcttgtctctatatgcccaaatcacctaagcctattatccaccatcttttctac 45185294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 598
Target Start/End: Original strand, 46715555 - 46715649
Alignment:
Q  504 gatcaactctccttactacctatccaacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgct 598  Q
    |||| ||||||||| |||| ||  | ||| |||||||||| | ||||||| | |||||||| |||  ||||||||| ||||||||||||||||||    
T  46715555 gatctactctccttgctacataatccacatgtcttctctctacatgcccacaccacctaagcctagtttccaccatcttttctacaataggtgct 46715649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 504 - 601
Target Start/End: Complemental strand, 28497588 - 28497492
Alignment:
Q  504 gatcaactctccttactacctatccaacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||| |||||||||||||| ||  | |||||||||||||| | ||||||||| |||||||| || | |||||| || |||||||| | ||||||||||    
T  28497588 gatctactctccttactacataatctacaagtcttctctctacatgcccaaaccacctaagcct-ttttccacaatcttttctactaaaggtgctacc 28497492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 436298 - 436231
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | |||||||||||| ||||| |||| ||| ||||  |||||||| ||||||||||||    
T  436298 gtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgctacc 436231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 601
Target Start/End: Original strand, 30621413 - 30621484
Alignment:
Q  530 acaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||| ||||||||| |  ||||||||||||||||  |||| ||||||||| |||||||| ||| ||||||||    
T  30621413 acaaatcttctctctacgtgcccaaatcacctaaacctattttccaccatcttttctactataagtgctacc 30621484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 601
Target Start/End: Complemental strand, 31459086 - 31459032
Alignment:
Q  547 atgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||||||| |||||||| |||| ||| ||||| |||||||| ||||||||||||    
T  31459086 atgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 31459032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 375
Target Start/End: Original strand, 1211393 - 1211446
Alignment:
Q  322 caaccacaaccaagttttatctcattatatggagtcggctacatgaatcaaatt 375  Q
    |||| |||||||||| ||||| |||||  ||| |||||||||||||||||||||    
T  1211393 caacaacaaccaagtcttatcccattaagtggggtcggctacatgaatcaaatt 1211446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 522
Target Start/End: Complemental strand, 28351724 - 28351640
Alignment:
Q  438 taatattttctcttatagttagtctaggtcttcctttacatcttgtaatatgactaagtttaatccgatcaactctccttactac 522  Q
    ||||| ||||||||||||||  |||||||||| || ||| ||||||||| ||||||   |  ||| |||| ||||||||||||||    
T  28351724 taatagtttctcttatagtttttctaggtctttctctacctcttgtaatctgactatcctccatctgatctactctccttactac 28351640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 44081 - 44148
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | ||||||||| |||||||| |||| |||| |||| |||||||| ||||||||||||    
T  44081 gtcttctctctacatgcccaaaccacctaagcctattttccgccatcttttctactataggtgctacc 44148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 49503767 - 49503834
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | ||||||||| |||||||| |||| ||| ||||| |||||||| ||||||||||||    
T  49503767 gtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 49503834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 50960846 - 50960913
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | ||||||||| |||||||| |||| ||| ||||| |||||||| ||||||||||||    
T  50960846 gtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 50960913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 21200617 - 21200552
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | ||||||||| ||||||||||||  ||||||||| ||||||||  |||||||||||    
T  21200617 gtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctac--taggtgctacc 21200552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 54128447 - 54128380
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||| |||| | ||||||||| |||||||| |||| ||| ||||| |||||||| ||||||||||||    
T  54128447 gtcttttctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 54128380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 601
Target Start/End: Original strand, 34719255 - 34719352
Alignment:
Q  504 gatcaactctccttactacctatccaacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||| ||||||||||||||  |  ||||| | |||||||| |||||  |||| |||||||||  |  ||||||||| |||||||| ||||||||||||    
T  34719255 gatctactctccttactacaaaatcaacaggccttctctctatatgttcaaaacacctaagttgactttccaccatcttttctacgataggtgctacc 34719352  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 601
Target Start/End: Complemental strand, 3987117 - 3987049
Alignment:
Q  533 agtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||||||||| | || |||||| ||||||||||||  ||| ||||| |||||||| ||||||| ||||    
T  3987117 agtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctactataggtgatacc 3987049  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 601
Target Start/End: Complemental strand, 28245503 - 28245439
Alignment:
Q  537 ttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||||| | ||||||||| || |||||||||| ||| ||||  |||||||| ||||||||||||    
T  28245503 ttctctctacatgcccaaaccatctaagtctattttctaccaacttttctactataggtgctacc 28245439  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 601
Target Start/End: Complemental strand, 31818606 - 31818534
Alignment:
Q  528 caacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||| |||||||||||  ||||  ||| ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  31818606 caacaggtcttctctcatcatgca-aaaccacctaagtctattttccaccattttttgtactataggtgctacc 31818534  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 21352050 - 21352117
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | ||| |||||||| ||||| |||| ||| |||| ||||||||| ||||||||||||    
T  21352050 gtcttctctctacatgtccaaatcatctaagcctattttctaccaatttttctactataggtgctacc 21352117  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 33084127 - 33084060
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||| | || |||||| ||||||||||||  ||| ||||| |||||||| ||||||||||||    
T  33084127 gtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgctacc 33084060  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 25493973 - 25494022
Alignment:
Q  444 tttctcttatagttagtctaggtcttcctttacatcttgtaatatgacta 493  Q
    ||||||||||||||  ||||||||||| | ||| ||||||||||||||||    
T  25493973 tttctcttatagttcttctaggtcttcttgtacctcttgtaatatgacta 25494022  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 601
Target Start/End: Complemental strand, 2079434 - 2079342
Alignment:
Q  509 actctccttactacctatccaacaagtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||||||||| ||  | |||| ||||||||| | || || ||| ||| |||| |||| ||||||||| |||||||| |||| |||||||    
T  2079434 actctccttactacataatctacaaatcttctctctacatacctaaaccacttaagcctattttccaccatcttttctactatagatgctacc 2079342  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 36143434 - 36143367
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||| |||| | ||||||||| ||||||||||||| ||||||||| | |||| | ||||||||||||    
T  36143434 gtcttttctctaaatgcccaaaccacctaagtctattttccaccatctattctgctataggtgctacc 36143367  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 45419306 - 45419239
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    ||||| |||| | ||||||||| ||||||||||||| ||  ||||| |||||||| ||||||||||||    
T  45419306 gtcttatctctacatgcccaaaccacctaagtctattttataccatcttttctactataggtgctacc 45419239  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 601
Target Start/End: Complemental strand, 9695698 - 9695633
Alignment:
Q  536 cttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctacc 601  Q
    |||||||| | ||||||||| |||||||| | |  ||||||||| |||||||| ||||||||||||    
T  9695698 cttctctctacatgcccaaaccacctaagccgagtttccaccatcttttctactataggtgctacc 9695633  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 603
Target Start/End: Original strand, 12491351 - 12491420
Alignment:
Q  534 gtcttctctcaatatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgctaccag 603  Q
    |||||||||| | ||||||||| || ||||| |||| ||| ||||  |||||||| ||||||||||||||    
T  12491351 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctaccag 12491420  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 598
Target Start/End: Original strand, 13171873 - 13171926
Alignment:
Q  545 atatgcccaaatcacctaagtctatcttccaccattttttctacaataggtgct 598  Q
    ||||||||||| ||||||||  ||| ||||||||| |||||||| |||||||||    
T  13171873 atatgcccaaaccacctaagcatattttccaccatcttttctactataggtgct 13171926  T

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