View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17236_low_2 (Length: 418)

Name: NF17236_low_2
Description: NF17236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17236_low_2
NF17236_low_2
[»] scaffold0105 (6 HSPs)
scaffold0105 (114-418)||(492-796)
scaffold0105 (304-418)||(2073-2187)
scaffold0105 (304-418)||(6859-6973)
scaffold0105 (304-418)||(14224-14338)
scaffold0105 (304-418)||(50504-50618)
scaffold0105 (304-418)||(32106-32220)
[»] chr4 (16 HSPs)
chr4 (1-418)||(8183773-8184193)
chr4 (3-296)||(8186957-8187252)
chr4 (118-331)||(1600474-1600687)
chr4 (1-236)||(7225809-7226046)
chr4 (109-249)||(659755-659895)
chr4 (1-160)||(546849-547010)
chr4 (1-227)||(553415-553643)
chr4 (7-249)||(55908641-55908885)
chr4 (61-158)||(1548428-1548527)
chr4 (118-238)||(53761696-53761816)
chr4 (1-160)||(12121459-12121620)
chr4 (1-86)||(1489439-1489524)
chr4 (354-411)||(547204-547261)
chr4 (1-34)||(1534121-1534154)
chr4 (1-49)||(1517611-1517659)
chr4 (79-160)||(1519144-1519227)
[»] scaffold0345 (1 HSPs)
scaffold0345 (304-418)||(6759-6873)
[»] chr8 (7 HSPs)
chr8 (1-248)||(18315187-18315436)
chr8 (1-161)||(27922444-27922606)
chr8 (16-227)||(34936098-34936311)
chr8 (64-158)||(17628018-17628114)
chr8 (6-160)||(32151242-32151398)
chr8 (1-103)||(44736471-44736573)
chr8 (266-318)||(32151501-32151553)
[»] chr3 (4 HSPs)
chr3 (1-243)||(51113700-51113944)
chr3 (4-114)||(51764490-51764600)
chr3 (1-238)||(13470656-13470895)
chr3 (266-310)||(514580-514624)
[»] chr5 (3 HSPs)
chr5 (1-155)||(41901542-41901698)
chr5 (1-227)||(32267411-32267636)
chr5 (1-317)||(41889399-41889717)
[»] chr2 (2 HSPs)
chr2 (7-249)||(1037577-1037821)
chr2 (1-87)||(45245162-45245248)
[»] chr6 (5 HSPs)
chr6 (1-107)||(6603259-6603365)
chr6 (266-331)||(9411555-9411620)
chr6 (1-92)||(19632375-19632466)
chr6 (1-243)||(6402796-6403040)
chr6 (114-158)||(12102317-12102361)
[»] chr1 (3 HSPs)
chr1 (1-107)||(7554424-7554530)
chr1 (271-331)||(9586844-9586904)
chr1 (271-330)||(9581276-9581335)
[»] scaffold0295 (1 HSPs)
scaffold0295 (1-249)||(537-787)
[»] chr7 (2 HSPs)
chr7 (1-106)||(15092209-15092314)
chr7 (92-249)||(7977605-7977764)


Alignment Details
Target: scaffold0105 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 114 - 418
Target Start/End: Original strand, 492 - 796
Alignment:
Q  114 tatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  492 tatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcaca 591  T
Q  214 acatctccttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttg 313  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  592 acatctacttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttg 691  T
Q  314 atgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattctctacacttc 413  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  692 atgtttttatcttttaacgcaccactgtcttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattctctacacttc 791  T
Q  414 atatc 418  Q
     ||||    
T  792 ttatc 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 304 - 418
Target Start/End: Original strand, 2073 - 2187
Alignment:
Q  304 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2073 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 2172  T
Q  404 tctacacttcatatc 418  Q
    |||||||||| ||||    
T  2173 tctacacttcttatc 2187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 304 - 418
Target Start/End: Original strand, 6859 - 6973
Alignment:
Q  304 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6859 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 6958  T
Q  404 tctacacttcatatc 418  Q
    |||||||||| ||||    
T  6959 tctacacttcttatc 6973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 304 - 418
Target Start/End: Original strand, 14224 - 14338
Alignment:
Q  304 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14224 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 14323  T
Q  404 tctacacttcatatc 418  Q
    |||||||||| ||||    
T  14324 tctacacttcttatc 14338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 304 - 418
Target Start/End: Complemental strand, 50618 - 50504
Alignment:
Q  304 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50618 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 50519  T
Q  404 tctacacttcatatc 418  Q
    |||||||||| ||||    
T  50518 tctacacttcttatc 50504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 304 - 418
Target Start/End: Complemental strand, 32220 - 32106
Alignment:
Q  304 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 403  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32220 aaacattttgatgtttttatcttttaatgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 32121  T
Q  404 tctacacttcatatc 418  Q
    |||||||||| ||||    
T  32120 tctacacttcttatc 32106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 8184193 - 8183773
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtga-cattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgct 99  Q
    |||| |||||||||||||||||  ||||||| |||| || |||||||||| | ||||||  ||||||||| | |||||||||||||| ||| ||||||||    
T  8184193 tctagcacatgcttcactccctcatctgtgatcatttca-caattttccagtaacagttccaaaagcccacaacaactctttgagattgcatagagtgct 8184095  T
Q  100 ttatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttca 197  Q
     ||||||| ||| ||  ||||||||||||||||  ||| ||||| | |||||||||||||||| |||  ||||||| | ||| ||  || ||||||||||    
T  8184094 atatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcattctgctcagcctcatttttggaatgtaagctaagttca 8183995  T
Q  198 attctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatac 297  Q
    | |||||||| |||||||| ||||||||||||||   |||| ||| |||||| || |||| | ||||||||||||||||  |||||||||| ||||| ||    
T  8183994 aatctctaatctcacaacaactccttaaaatttgagtaatacctttttcagaaatgtcaaagcaatgactcaaatcaagccgctgcaaattggggaacac 8183895  T
Q  298 tgaagcaaacattttgatgtttttatcttttaacgcaccactgccttgcaaac-tacgagactttatttgagggcttataacaatatccattaaagaatt 396  Q
     ||||||||  |||||| |||||||||| |||||  || | ||  |||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  8183894 ggaagcaaattttttgacgtttttatctgttaaccaacgattgatttgcaaacttaagagactttatttgagggcttataacaatatccattaaagaatt 8183795  T
Q  397 ataattctctacacttcatatc 418  Q
    ||||||||||||||||| ||||    
T  8183794 ataattctctacacttcttatc 8183773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 3 - 296
Target Start/End: Complemental strand, 8187252 - 8186957
Alignment:
Q  3 taccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgcttta 102  Q
    |||||||| | ||||||||||| ||||||| |||| ||||||||||| | |||  || ||||||||| | ||||||||||| || ||| | |||| ||||    
T  8187252 taccacatccatcactcccttccctgtgacgttacgacaattttccagtaacaactgcaaaagcccacaacaactctttgaaattgcataaagtgtttta 8187153  T
Q  103 tcatcta--cttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaatt 200  Q
    ||||| |  ||| |||||||||||||||||  ||||||||| |||| |||||||||||||  |   ||||  ||||||| | | |||||||||||||| |    
T  8187152 tcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaat 8187053  T
Q  201 ctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaata 296  Q
    | ||||| |||||||||||| | |||| ||| |||||| |||||||||| || |||  | |||||||||||||||| | ||||||||| |||||||    
T  8187052 ccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaattggggaata 8186957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 331
Target Start/End: Original strand, 1600474 - 1600687
Alignment:
Q  118 tgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacat 217  Q
    |||||||||||||  ||||||||||  ||||||||||||||||   || ||| ||| | ||||| ||| |||||||||||| | |||||||| | || ||    
T  1600474 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaaatgtctaattttagaaaat 1600573  T
Q  218 ctccttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatact-gaagcaaacattttgatg 316  Q
    |||||||||| ||| |||||| |||||||||| || | |||| ||   ||||||||||| || |||||| ||||||| | | |||||||||||| ||||     
T  1600574 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaa-ttgggaaaattggaagcaaacattatgatc 1600672  T
Q  317 tttttatcttttaac 331  Q
    ||| |||||| ||||    
T  1600673 tttgtatcttgtaac 1600687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7226046 - 7225809
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    |||||||| ||||||| ||||||||| ||||| | | ||||| |||||| | | ||||| ||||| ||| | ||||||||||| ||| ||   ||| |||    
T  7226046 tctaccacgtgcttcaatcccttctcggtgacctcaaaacaactttccagtaatagttgcaaaagtccacaacaactctttgatatcacacgaagtcctt 7225947  T
Q  101 tatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaa 198  Q
    | ||||| ||| ||  |||||||||||||||   ||||| ||    ||||||||||||||| ||||||||| ||||||||| | | |||| |||||||||    
T  7225946 tgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttcatgttgcgtagcttcactcttggacagtaggataagttcaa 7225847  T
Q  199 ttctctaatttcacaacatctccttaaaatttgtcaaa 236  Q
     | |||||| | ||||||||||| ||||| ||| ||||    
T  7225846 atgtctaatcttacaacatctccgtaaaacttgacaaa 7225809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 109 - 249
Target Start/End: Original strand, 659755 - 659895
Alignment:
Q  109 acttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatt 208  Q
    |||| |||||||||||||||||  ||| ||||| | ||||||||| || |||   |||||| || |||||||| |  |||||||||| || | ||||||     
T  659755 acttgtatgtgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttgaacagcaggctaagtttaaatatctaatg 659854  T
Q  209 tcacaacatctccttaaaatttgtcaaatatcttcttcaga 249  Q
    | ||||||||||||||||||||| | |||||||||||||||    
T  659855 ttacaacatctccttaaaatttgaccaatatcttcttcaga 659895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 546849 - 547010
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    |||| |||||| |||||||||||||||||||||| | |||| | ||||| | ||| ||  ||||||||| | ||||||||||||||| || |||||| ||    
T  546849 tctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactctttgagatcacatagagtgttt 546948  T
Q  101 tatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcatt 160  Q
     |||||  ||  || || |||||||||||| |  ||||| ||||| ||||||||||||||||    
T  546949 catcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcatt 547010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 553415 - 553643
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||||||||| |||||||| || |||||||||| || |||||    |||  ||||||| ||||||||||| ||||||||||| ||| ||   |||||||    
T  553415 tctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagcccagaacaactctttgaaatcacattaagtgctt 553514  T
Q  101 tatcatcta--cttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaa 198  Q
     |||||| |  ||| ||  |||||||||||||  |||||||||   ||||| |||||||| | | |||| | ||||||||||| |   || |||||||||    
T  553515 catcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcgggttaagttcaa 553614  T
Q  199 ttctctaatttcacaacatctccttaaaa 227  Q
     | |||||| | ||||||| |||||||||    
T  553615 atgtctaatgttacaacatgtccttaaaa 553643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 55908885 - 55908641
Alignment:
Q  7 acatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcat 106  Q
    ||||| ||||| || ||||||||||| | |  |||||||||||   ||||||||||||||||| | ||| |||||||||||  | |||||| || |||||    
T  55908885 acatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcat 55908786  T
Q  107 c--tacttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctct 204  Q
    |   || | ||||||||||||| |||  ||| | || || ||||| |||||| ||| |  ||||  ||||||||||| | |||||||| ||||| | |||    
T  55908785 caacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtct 55908686  T
Q  205 aatttcacaacatctccttaaaatttgtcaaatatcttcttcaga 249  Q
    ||  | |||||||||||||| || ||  |||||| ||||||||||    
T  55908685 aaccttacaacatctccttagaacttcacaaataccttcttcaga 55908641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 1548527 - 1548428
Alignment:
Q  61 aaaagcccagagcaactctttgagatcgcaaagagtgctttatcatc--tacttttatgtgacaagttcaacgactccagtttagaaacttcaaagttca 158  Q
    ||||||||| | ||||||||||||||| ||  ||||| || ||||||  ||||| |||||||||||||||||  ||||||||| | || |||||||||||    
T  1548527 aaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 53761816 - 53761696
Alignment:
Q  118 tgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacat 217  Q
    |||||||||||||| ||| || || | |||| |||||||||||     |||| ||||||||||| ||| |||||||||||| |  ||||| | |||||||    
T  53761816 tgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacat 53761717  T
Q  218 ctccttaaaatttgtcaaata 238  Q
    |||||||||| ||| ||||||    
T  53761716 ctccttaaaacttgacaaata 53761696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 12121620 - 12121459
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||||||||||||||||||| |||||||||||  | | ||   ||||| ||| ||||| |||||||||  ||||| |||||||||  |  |||||| ||    
T  12121620 tctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccagtgagagttgcaaaagcccacggcaacactttgagattacggagagtgttt 12121521  T
Q  101 tatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcatt 160  Q
     |||||| ||  || ||| |||||||||||||   || ||||| | ||||||||||||||||    
T  12121520 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 12121459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1489524 - 1489439
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagat 86  Q
    |||| ||||||||||||||||||||||||||||||| ||||   ||||| | | ||||| |||||||||  ||||| | |||||||    
T  1489524 tctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattgagat 1489439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 547204 - 547261
Alignment:
Q  354 gagactttatttgagggcttataacaatatccattaaagaattataattctctacact 411  Q
    ||||||| | ||||||||||| ||||| |||| | ||||||||| |||||||||||||    
T  547204 gagacttcaattgagggcttacaacaaaatccttgaaagaattagaattctctacact 547261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1534154 - 1534121
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacat 34  Q
    |||||||||||||| |||||||||||||||||||    
T  1534154 tctaccacatgcttaactcccttctctgtgacat 1534121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1517659 - 1517611
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttcca 49  Q
    |||||||||||| | ||||||||||||||||||| |  |||||||||||    
T  1517659 tctaccacatgcctaactcccttctctgtgacatcatgacaattttcca 1517611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 1519227 - 1519144
Alignment:
Q  79 tttgagatcgcaaagagtgctttatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcatt 160  Q
    ||||||||| || |||||||||  ||||| ||  || |||||||||||||||||  ||| ||||| | ||||||||||||||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcatt 1519144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 304 - 418
Target Start/End: Original strand, 6759 - 6873
Alignment:
Q  304 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 403  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6759 aaacattttgatgtttttatcttttaatgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 6858  T
Q  404 tctacacttcatatc 418  Q
    |||||||||| ||||    
T  6859 tctacacttcttatc 6873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 18315436 - 18315187
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    |||||||||| |||  |||| ||||||||||||| ||||||   ||||||| ||||||| ||||||| |   ||||||||||||||| || |||||||||    
T  18315436 tctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgagatcacatagagtgctt 18315337  T
Q  101 tatcatctacttt--tatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaa-aactaggctaagttca 197  Q
     |||||| |||||  |||||||||||||||||  ||||||||| | ||||| ||||||||||   |||||| ||| |||||||  || | ||||||||||    
T  18315336 catcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagcttcattcttgaatcacga-gctaagttca 18315238  T
Q  198 attctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcag 248  Q
    | | |||||| ||| |||| || | ||||| ||| |||||| |||||||||    
T  18315237 actgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcag 18315187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 27922444 - 27922606
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||||||||| ||||||||||||| ||||| || |  ||||||||| | ||||| ||  ||||||||| | |||||||||||||||  | | |||||||    
T  27922444 tctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgctt 27922543  T
Q  101 tatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattt 161  Q
     |||||| ||  || ||| |||||||||||||  ||||| ||| | |||||||||||||||||    
T  27922544 catcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcattt 27922606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 34936311 - 34936098
Alignment:
Q  16 actcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatcta--cttt 113  Q
    ||||||||||| ||||||| |||||||||||  | | | ||||| |||||||||   |||||||||| ||| ||| |||||| ||||||||| |  |||     
T  34936311 actcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttg 34936212  T
Q  114 tatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcaca 213  Q
    ||| |||||||| ||||  ||| ||||| | ||| |||||| ||||| || | ||  ||||| ||||| | | ||| |||| ||| | |||||| |||||    
T  34936211 tatatgacaagtccaacacctctagttttggaacatcaaagatcattctgtgaaggttcacttttgaacaatcggccaagtacaaatgtctaatgtcaca 34936112  T
Q  214 acatctccttaaaa 227  Q
    ||||||||||||||    
T  34936111 acatctccttaaaa 34936098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 17628114 - 17628018
Alignment:
Q  64 agcccagagcaactctttgagatcgcaaagagtgctttatcatctacttt--tatgtgacaagttcaacgactccagtttagaaacttcaaagttca 158  Q
    |||||| | ||| ||||||||||| ||  ||||||||||||||| ||| |  |||||||||||||||||  ||||| |||||||| || ||||||||    
T  17628114 agcccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 32151242 - 32151398
Alignment:
Q  6 cacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatca 105  Q
    |||||||||||| ||||||||||||||||    ||||    ||||| ||||||| |||||||||   ||||||||||||||| || |||||| || ||||    
T  32151242 cacatgcttcacccccttctctgtgacatatttacaagacaccaataacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatca 32151341  T
Q  106 tcta--cttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcatt 160  Q
    || |  ||| ||  ||||||||| |||  |||||| || |||||||| |||||||||    
T  32151342 tcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcatt 32151398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 44736471 - 44736573
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||| ||||| ||||||||||||  |||||||||| ||||||    ||||  |||||  ||||||||| | ||||||||||||||| ||| ||||| ||    
T  44736471 tctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacaacaactctttgagatcacaatgagtgttt 44736570  T
Q  101 tat 103  Q
    |||    
T  44736571 tat 44736573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 32151501 - 32151553
Alignment:
Q  266 ctcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtt 318  Q
    ||||||||||| || |||||||| ||||| |  ||||||||||||||||||||    
T  32151501 ctcaaatcaagcagttgcaaattagggaaaatggaagcaaacattttgatgtt 32151553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 51113944 - 51113700
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||||||||||||||||||||||||||||||||   ||||||||| || | ||||||| ||||||||| | |||||||| |||||| || |||||| ||    
T  51113944 tctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgttt 51113845  T
Q  101 tatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaa 198  Q
     |||||| ||  || ||| ||||||||  |||  ||||||||| | | ||||||||||||||    ||||| ||| | ||||| | || ||||| |||||    
T  51113844 catcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaa 51113745  T
Q  199 ttctctaatttcacaacatctccttaaaatttgtcaaatatcttc 243  Q
     |  ||||||| |||||||||| |||||| ||| |||||| ||||    
T  51113744 atgcctaattttacaacatctctttaaaacttgacaaataccttc 51113700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 51764600 - 51764490
Alignment:
Q  4 accacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttat 103  Q
    |||||||| ||||||||||||||  ||||||||  ||||| ||||| | | ||||| ||||||||  | ||| |||||||||||||| |||||| |||||    
T  51764600 accacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcatagagtgttttat 51764501  T
Q  104 catctactttt 114  Q
    |||| ||||||    
T  51764500 catcaactttt 51764490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13470895 - 13470656
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||||||||| ||||||||||  ||||||||||||  ||||  ||| | | | ||||| ||||||||| | ||| |||||||||||  | |||||| ||    
T  13470895 tctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatatagagtgttt 13470796  T
Q  101 tatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaa 198  Q
    ||||||  ||  || ||| |||||||||||||  |||||| || | |||  |||||||||||    ||||| ||||| ||  | | ||||||||||||||    
T  13470795 tatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaa 13470696  T
Q  199 ttctctaatttcacaacatctccttaaaatttgtcaaata 238  Q
     |  ||||| | ||||||| ||||||||| ||| ||||||    
T  13470695 atgcctaatcttacaacatatccttaaaacttgacaaata 13470656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 514624 - 514580
Alignment:
Q  266 ctcaaatcaagtagctgcaaatttgggaatactgaagcaaacatt 310  Q
    |||||||||| |||||||||||| ||||| | |||||||||||||    
T  514624 ctcaaatcaattagctgcaaattcgggaaaattgaagcaaacatt 514580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 41901698 - 41901542
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||||||||||||||||||||||| |||||||| |  ||||| ||  | ||||| ||  ||||| ||| | |||||||||||||||  | | |||||||    
T  41901698 tctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaagtgctt 41901599  T
Q  101 tatcatctacttt--tatgtgacaagttcaacgactccagtttagaaacttcaaagt 155  Q
     |||||| |||||  ||| |||||||||||||  ||||||||| | |||||||||||    
T  41901598 catcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 32267411 - 32267636
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||| ||||||||||||||||||| ||||| || |  ||||||||  | ||||| ||  ||||||||| | |||||||||||||||  | | |||||||    
T  32267411 tctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgctt 32267510  T
Q  101 tatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaa 198  Q
     |||||| ||  || | ||||||||||||||   ||||| ||| | |||||||||||||||||    |||  ||||| ||||| ||| || |||||||||    
T  32267511 catcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcattt---ctagtttcactgttgaacactgggataagttcaa 32267607  T
Q  199 ttctctaatttcacaacatctccttaaaa 227  Q
     | |||||| | ||||||| |||||||||    
T  32267608 atgtctaatgttacaacatatccttaaaa 32267636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 41889717 - 41889399
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||||||||| ||||||||||||| |||||||| | |||||||||  | | ||| ||   |||||||  | |||||||||||||||  | | |||| ||    
T  41889717 tctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgttt 41889618  T
Q  101 tatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaa 198  Q
     |||||| ||||||  || ||| |||||||||  ||||| ||| | ||||| |||||||||||   ||||| ||||| ||||| |   || |||||||||    
T  41889617 catcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaa 41889518  T
Q  199 ttctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatact 298  Q
     | |||||| | ||||||| ||||||||| |||   |||| |||| ||| | ||   |    |||  ||||||||||||||||||||||| ||||| |      
T  41889517 atatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaattagggaaaatg 41889418  T
Q  299 gaagcaaacattttgatgt 317  Q
    |||||||||||| ||||||    
T  41889417 gaagcaaacattatgatgt 41889399  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 1037821 - 1037577
Alignment:
Q  7 acatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcat 106  Q
    ||||| ||||| || ||||||||||| | |  |||||||||||   ||||||||||||||||| | ||| |||||||||||  | |||||| || |||||    
T  1037821 acatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcat 1037722  T
Q  107 ctact--tttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctct 204  Q
    | ||   | ||||||||||||| |||  ||| | || || ||||| |||||| ||| |  ||||  ||||||||||| | |||||||| ||||| | |||    
T  1037721 caacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaatagtaggctaaattcaaatgtct 1037622  T
Q  205 aatttcacaacatctccttaaaatttgtcaaatatcttcttcaga 249  Q
    ||  | ||||||||||||||||| ||  |||||| ||||||||||    
T  1037621 aaccttacaacatctccttaaaacttcacaaataccttcttcaga 1037577  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 45245248 - 45245162
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatc 87  Q
    ||||||||||| ||||||||||| |||||||||| | |||| |||| |||| | ||||| |||||||||   |||||||||||||||    
T  45245248 tctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatc 45245162  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 6603365 - 6603259
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||||||||| |||||||| ||||||||||||| | |||||| || |||| | ||||  ||||||||||  |||||||||||||||||| ||| || ||    
T  6603365 tctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactctttgagatcgcatagactgttt 6603266  T
Q  101 tatcatc 107  Q
     ||||||    
T  6603265 catcatc 6603259  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 9411555 - 9411620
Alignment:
Q  266 ctcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtttttatcttttaac 331  Q
    ||||||||||| ||||||||||| ||||| |  ||||||||| ||||||||||||||||| |||||    
T  9411555 ctcaaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatctcttaac 9411620  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 19632375 - 19632466
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaa 92  Q
    |||||||| || ||||||||||||||||||| ||||  |||||||| || | | ||||| ||||||||| | ||| ||||||||||| ||||    
T  19632375 tctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcacaaa 19632466  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 6402796 - 6403040
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    |||| |||||| ||| ||||||| |||||||||||| |||||| |  |||| | ||||  |||||||||   ||| ||||||||||| || |||||| ||    
T  6402796 tctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaattctttgagatcacatagagtgttt 6402895  T
Q  101 tatcatctacttt--tatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaa 198  Q
     |||||| || ||  ||| |||||||||||||   || ||||  | |||| ||||||| |||    ||||| ||||||||||| ||   | |||||||||    
T  6402896 catcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaagttcaa 6402995  T
Q  199 ttctctaatttcacaacatctccttaaaatttgtcaaatatcttc 243  Q
     |  ||||| | ||||||||||||||||| ||| |||||| ||||    
T  6402996 atgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 12102317 - 12102361
Alignment:
Q  114 tatgtgacaagttcaacgactccagtttagaaacttcaaagttca 158  Q
    |||||||||||||||||  ||||||||| | ||||||||||||||    
T  12102317 tatgtgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 7554424 - 7554530
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||||||||||||||||||||| ||||||||||||  |||   || || | ||||||||||||| |||   |||||||||||||||  | |||||||||    
T  7554424 tctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgctt 7554523  T
Q  101 tatcatc 107  Q
     ||||||    
T  7554524 catcatc 7554530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 9586844 - 9586904
Alignment:
Q  271 atcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtttttatcttttaac 331  Q
    |||||| ||||||||||| ||||| | ||||||||||||| |||||||||||||| |||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaac 9586904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 9581276 - 9581335
Alignment:
Q  271 atcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtttttatcttttaa 330  Q
    |||||| ||||||||||| ||||| | ||||||||||||| |||||||||||||| ||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaa 9581335  T

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Target: scaffold0295 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 787 - 537
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    ||||| ||||| ||||| || |||||| |||| | |  ||||||||||| | |||||||||| |||||| | ||| |||| ||||||  | |||||| ||    
T  787 tctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgagatcatatagagtgttt 688  T
Q  101 tatcatc--tacttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaa 198  Q
     ||||||   |||| ||||||||||||| |||  ||| | || || ||||| |||||| ||| |  ||||  ||||||||||| | |||||||| |||||    
T  687 catcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaa 588  T
Q  199 ttctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcaga 249  Q
     | ||||   | |||||||||||||| || ||  |||||| ||||||||||    
T  587 atgtctagccttacaacatctccttagaacttcacaaataccttcttcaga 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 15092314 - 15092209
Alignment:
Q  1 tctaccacatgcttcactcccttctctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctt 100  Q
    |||| |||||| |||||||||   |||||||||||| |||||  ||| | | | ||||| ||||||||| | ||| |||||||||||||| |||||| ||    
T  15092314 tctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaattctttgagatcgcatagagtgttt 15092215  T
Q  101 tatcat 106  Q
    ||||||    
T  15092214 tatcat 15092209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 7977605 - 7977764
Alignment:
Q  92 agagtgctttatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggc 189  Q
    |||||| ||||||||| ||| ||  ||||||||||||||| | ||| |||||  |||| || || ||||||   |||||  |||| |||||| |  ||||    
T  7977605 agagtgttttatcatcaactgttgtatgtgacaagttcaaagcctcgagtttgcaaacgtcgaatttcattccacgtagattcacccttgaacaacaggc 7977704  T
Q  190 taagttcaattctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcaga 249  Q
    || ||| || | |||||| | ||||||||||||||||| ||| | |||| ||||||||||    
T  7977705 taggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcaga 7977764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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