View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17236_low_3 (Length: 396)

Name: NF17236_low_3
Description: NF17236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17236_low_3
NF17236_low_3
[»] chr1 (6 HSPs)
chr1 (145-373)||(44827405-44827643)
chr1 (90-323)||(16767409-16767652)
chr1 (90-297)||(50515722-50515939)
chr1 (90-297)||(45910153-45910370)
chr1 (90-189)||(44712728-44712827)
chr1 (212-297)||(44712860-44712945)
[»] chr6 (1 HSPs)
chr6 (97-361)||(24132817-24133100)
[»] chr2 (8 HSPs)
chr2 (239-369)||(19991178-19991317)
chr2 (90-317)||(26263142-26263378)
chr2 (123-317)||(10924584-10924788)
chr2 (90-297)||(17312134-17312351)
chr2 (90-189)||(38619753-38619852)
chr2 (212-289)||(28313010-28313087)
chr2 (317-369)||(26263063-26263115)
chr2 (216-262)||(38619670-38619716)
[»] chr3 (4 HSPs)
chr3 (90-314)||(6161683-6161917)
chr3 (84-189)||(52972068-52972173)
chr3 (219-317)||(54586777-54586875)
chr3 (84-174)||(54586930-54587020)
[»] chr5 (6 HSPs)
chr5 (90-369)||(38965934-38966229)
chr5 (90-291)||(13850346-13850557)
chr5 (216-297)||(20235942-20236023)
chr5 (125-174)||(31045294-31045343)
chr5 (216-297)||(34833657-34833738)
chr5 (90-174)||(34833551-34833635)
[»] chr8 (6 HSPs)
chr8 (90-314)||(754448-754683)
chr8 (90-317)||(23710152-23710389)
chr8 (207-317)||(40455932-40456042)
chr8 (90-194)||(9140144-9140248)
chr8 (216-297)||(9173497-9173578)
chr8 (319-369)||(23710430-23710480)
[»] chr7 (4 HSPs)
chr7 (230-368)||(15889458-15889602)
chr7 (113-194)||(15890912-15890993)
chr7 (113-194)||(41257011-41257092)
chr7 (91-174)||(19216051-19216134)
[»] chr4 (2 HSPs)
chr4 (24-87)||(34256100-34256163)
chr4 (114-189)||(46223769-46223844)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 145 - 373
Target Start/End: Complemental strand, 44827643 - 44827405
Alignment:
Q  145 actcctctttcacatatcacggtaacaaatacacttcttccattgtcaccat----------accaatgacggttgtaaatccaagcttccttgttttct 234  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |          ||||||||||||||||||||||||||||||||||||||    
T  44827643 actcctctttcacatatcacggtaacaaaaacacttcttccattgtcacctttatcggatttaccaatgacggttgtaaatccaagcttccttgttttct 44827544  T
Q  235 ctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaaatcttctccatgatcaattcaaacaacaggaggaggagcatcatc 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  44827543 ctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaaatcttctccatgatcaattcaaacaataggaggaggagtatcatc 44827444  T
Q  335 tacttttgcatcacctaaggaaatatcaagtttcgatgt 373  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  44827443 tacttttgcatcacttaaggaaatatcaagtttccatgt 44827405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 90 - 323
Target Start/End: Original strand, 16767409 - 16767652
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    |||||| ||||| |||||||| | |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||    
T  16767409 tttaactgaacctgcaattttgcaccgagtcttcctcttgtactccctgtatgaacctcctatttcacatatcacggtaacaaatgcacttcttccattg 16767508  T
Q  190 tcaccat----------accaatgacggttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgct 279  Q
    ||| | |          |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||  ||||||||  |    
T  16767509 tcatctttatcggatttaccaatgacgattgtaaatccaagcttccttgctttctctcgaacctactccaacaaatcattccgcgtagaaaactttttgt 16767608  T
Q  280 tggtggtaaaatcttctccatgatcaattcaaacaacaggagga 323  Q
    | |||||||||| |||| |||||| ||| |||||||||||||||    
T  16767609 ttgtggtaaaatgttcttcatgattaatacaaacaacaggagga 16767652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 297
Target Start/End: Complemental strand, 50515939 - 50515722
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    ||||||||||| ||| || |  |||||| |||| ||||||||||| ||||||||| || | |||||||||||||  |||| |||| ||||||||||||||    
T  50515939 tttaaccgaactagctatctcgcgccgactctttctcttgtactcattgtatgaaccttccctttcacatatcaaagtaagaaatgcacttcttccattg 50515840  T
Q  190 tcacc----------ataccaatgacggttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgct 279  Q
     ||||           ||||||| || || | ||| ||||||||||| | |||||||| |||||||||||| ||||||||||| ||  ||||||| || |    
T  50515839 ccaccgttatcggatttaccaataacagtggaaaaaccaagcttcctagctttctctccaacccactccaacaaatcattccgtgttgcaaacttgtgtt 50515740  T
Q  280 tggtggtaaaatcttctc 297  Q
    | |||||||||| |||||    
T  50515739 tagtggtaaaatgttctc 50515722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 297
Target Start/End: Original strand, 45910153 - 45910370
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    ||||||||||||||| || |  |||||| |||| |||||||||||  |||||||| |||| |||||||||||||  ||||||||| | ||||||||||||    
T  45910153 tttaaccgaaccagctatctcgcgccgaatctttctcttgtactcgatgtatgaacctcccctttcacatatcaaagtaacaaatgcgcttcttccattg 45910252  T
Q  190 tcacc----------ataccaatgacggttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgct 279  Q
     ||||           ||||||| || || | ||| ||||||||||| | |||||||| |||||||||||| ||||||||| | ||   |||||| || |    
T  45910253 ccaccgttatcagatttaccaataacagtggaaaaaccaagcttcctagctttctctccaacccactccaacaaatcattctgtgttggaaacttgtgtt 45910352  T
Q  280 tggtggtaaaatcttctc 297  Q
    | |||||||||| |||||    
T  45910353 tagtggtaaaatgttctc 45910370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 189
Target Start/End: Original strand, 44712728 - 44712827
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    ||||||||||||| | || |  |||||| |||| |||||||||||  |||||||| |||| |||||||||||||  ||||||||| | ||||||||||||    
T  44712728 tttaaccgaaccaactatctggcgccgactctttctcttgtactcggtgtatgaacctcccctttcacatatcaaagtaacaaatgcgcttcttccattg 44712827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 44712860 - 44712945
Alignment:
Q  212 aaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaaatcttctc 297  Q
    ||| ||||||||||| | |||||||| |||||||| ||| ||||||||||| ||  ||||||| || || |||||||||| |||||    
T  44712860 aaaaccaagcttcctagctttctctccaacccacttcaacaaatcattccgtgttgcaaacttgtgtttagtggtaaaatgttctc 44712945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 97 - 361
Target Start/End: Original strand, 24132817 - 24133100
Alignment:
Q  97 gaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattgtcacc-- 194  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||||      
T  24132817 gaaccaacaattttgcgctgagtcttcctcttgtactccttgtatgaacctcctctttcacatatcacggtaacgaatgcacttcttccattgccacctt 24132916  T
Q  195 --------ataccaatgacggttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggt 286  Q
             || ||||||||| ||||||||||   ||| ||| |||| |||||||||||||||| ||||||||||| |||  |||||||| |||||||||    
T  24132917 tatcggatttagcaatgacggatgtaaatccacatttctttgctttccctcgaacccactccaacaaatcattccgagtagtaaactttttcttggtggt 24133016  T
Q  287 aaaatcttctccatgatcaattcaaacaac---------aggaggaggagcatcatctacttttgcatcacctaaggaaatatc 361  Q
     |||| ||||||||||||||| ||||||||         ||||||||||||||||||||||||||||||||| |||||| ||||    
T  24133017 taaatgttctccatgatcaatacaaacaacacgaggaataggaggaggagcatcatctacttttgcatcaccaaaggaactatc 24133100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 239 - 369
Target Start/End: Original strand, 19991178 - 19991317
Alignment:
Q  239 aacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaaatcttctccatgatcaattcaaacaacaggagg---------aggagca 329  Q
    ||||||||| || ||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||| || ||||         |||||||    
T  19991178 aacccactctaacaaatcgttccgtgtaacaaatttttgcttggtggtaaaatgttctccatgatcaatacaaacagcacgaggaatatgaggaggagca 19991277  T
Q  330 tcatctacttttgcatcacctaaggaaatatcaagtttcg 369  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19991278 tcatctacttttgcatcacctaaggaaatatcaagtttcg 19991317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 317
Target Start/End: Complemental strand, 26263378 - 26263142
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    ||||||||||| ||  ||||| |||||| ||  | ||||||||||  |||||||| || |||||||||||||||| ||||||||| |||||||||||||     
T  26263378 tttaaccgaactagatattttgcgccgaatcaacttcttgtactcggtgtatgaaccttctctttcacatatcacagtaacaaatgcacttcttccattt 26263279  T
Q  190 tcaccat----------accaatgacggttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgct 279  Q
     |||| |          |||||| | ||||| |||||| |||||||||| || |||||||||||||||||| ||||| ||  | ||| ||||| |||| |    
T  26263278 ccacctttatctgatttaccaataa-ggttgaaaatcctagcttccttgcttcctctcgaacccactccaacaaatcgttatgtgtagcaaacctttgtt 26263180  T
Q  280 tggtggtaaaatcttctccatgatcaattcaaacaaca 317  Q
    |||||||||||| ||||| ||||||||| |||||||||    
T  26263179 tggtggtaaaatgttctcaatgatcaatacaaacaaca 26263142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 317
Target Start/End: Complemental strand, 10924788 - 10924584
Alignment:
Q  123 cctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattgtcaccat----------accaatgacggttgta 212  Q
    ||||||||| ||  |||||||| ||||||||||||||||||  ||||||||| || ||||||||||| |||| |          |||||| ||||||  |    
T  10924788 cctcttgtattcggtgtatgaacctcctctttcacatatcatagtaacaaatgcatttcttccattgccacctttatctgatttaccaataacggtttaa 10924689  T
Q  213 aatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaaatcttctccatgatcaattcaaa 312  Q
    ||| | |||||||||| || |||||||||||||||||| ||||| ||| | ||| |||||||||| ||||||||||||| ||||| || ||||||  |||    
T  10924688 aattctagcttccttgcttcctctcgaacccactccaacaaatcgttctgtgtagcaaacttttgtttggtggtaaaatattctcgatcatcaatagaaa 10924589  T
Q  313 caaca 317  Q
    |||||    
T  10924588 caaca 10924584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 297
Target Start/End: Original strand, 17312134 - 17312351
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    ||||||||||||||| || |  |||||| |||| |||||||||||  |||||||| |||| |||||||||||||  |||||||||   ||||||||||||    
T  17312134 tttaaccgaaccagctatctcccgccgactctttctcttgtactcggtgtatgaacctcccctttcacatatcaaagtaacaaatgtgcttcttccattg 17312233  T
Q  190 tcacc----------ataccaatgacggttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgct 279  Q
     ||||           ||||||| || || | ||| ||||||||||| | |||||||| |||||||||||| ||||||||||| ||  ||||||| || |    
T  17312234 ccaccgttatcggatttaccaataacagtggaaaaaccaagcttcctagctttctctccaacccactccaacaaatcattccgtgttgcaaacttgtgtt 17312333  T
Q  280 tggtggtaaaatcttctc 297  Q
    | |||||||||| |||||    
T  17312334 tagtggtaaaatgttctc 17312351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 38619852 - 38619753
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    ||||||||||||||| || | ||| ||| |||| |||||||||||  |||||||| |||| |||||||||||||  ||||||||| | ||||||||||||    
T  38619852 tttaaccgaaccagctatctcacgtcgactctttctcttgtactcgatgtatgaacctcccctttcacatatcaaagtaacaaatgcgcttcttccattg 38619753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 28313010 - 28313087
Alignment:
Q  212 aaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaa 289  Q
    |||||| |||||||||  || |||||||||||||||||||||||| ||| | |||  ||||||||| |||||||||||    
T  28313010 aaatcctagcttccttacttactctcgaacccactccaataaatcgttctgtgtagaaaacttttgtttggtggtaaa 28313087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 26263115 - 26263063
Alignment:
Q  317 aggaggaggagcatcatctacttttgcatcacctaaggaaatatcaagtttcg 369  Q
    ||||||||||||||| |||||||| ||||| ||||| |||||||||| |||||    
T  26263115 aggaggaggagcatcctctactttcgcatctcctaaagaaatatcaactttcg 26263063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 38619716 - 38619670
Alignment:
Q  216 ccaagcttccttgttttctctcgaacccactccaataaatcattccg 262  Q
    ||||||||||| | |||||||| |||||||||||| |||||||||||    
T  38619716 ccaagcttcctagatttctctccaacccactccaacaaatcattccg 38619670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 314
Target Start/End: Original strand, 6161683 - 6161917
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    ||||||||||||||| || |  |||||| |||| |||||||||||  |||||||| ||||  ||||||||||||  |||||||||   ||||||||||||    
T  6161683 tttaaccgaaccagctatctcgcgccgactctttctcttgtactcggtgtatgaacctcccatttcacatatcaaagtaacaaatgtgcttcttccattg 6161782  T
Q  190 tcaccat----------accaatgacggttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgct 279  Q
     |||| |          |||||| || || | ||| |||||||| || | ||||||||||||||||||||| ||||||||||| ||  ||||||||||||    
T  6161783 ccaccgttatcgaatttaccaataacagtggaaaaaccaagcttgctagctttctctcgaacccactccaacaaatcattccgtgttgcaaacttttgct 6161882  T
Q  280 tggtggtaaaatcttctccatgatcaattcaaaca 314  Q
    |  ||||||||| |||||  || ||||| ||||||    
T  6161883 tattggtaaaatgttctcgctggtcaatacaaaca 6161917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 52972068 - 52972173
Alignment:
Q  84 cttgcttttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttctt 183  Q
    ||||| |||||||||| |||| || |  |||||| |||| |||||||||||  |||||||| | ||||||||||||||||  ||||||||| | ||||||    
T  52972068 cttgcatttaaccgaagcagctatctcgcgccgactctttctcttgtactcggtgtatgaaccccctctttcacatatcaaagtaacaaatgcgcttctt 52972167  T
Q  184 ccattg 189  Q
    ||||||    
T  52972168 ccattg 52972173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 54586875 - 54586777
Alignment:
Q  219 agcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaaatcttctccatgatcaattcaaacaaca 317  Q
    |||||||| | ||||||||||||||||||||| ||||||||  | ||  ||||||| ||  | |||||||||| |||||  |||||||| |||||||||    
T  54586875 agcttcctagctttctctcgaacccactccaacaaatcattatgtgttgcaaacttgtgtgtagtggtaaaatgttctcgctgatcaatacaaacaaca 54586777  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 54587020 - 54586930
Alignment:
Q  84 cttgcttttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaat 174  Q
    ||||| ||||||||||||||| || |  |||||| |||| ||||| ||||   |||||||| |||| |||||||||||||  |||||||||    
T  54587020 cttgcatttaaccgaaccagctatctcgcgccgactctttctcttatactttgtgtatgaacctcccctttcacatatcaaagtaacaaat 54586930  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 369
Target Start/End: Complemental strand, 38966229 - 38965934
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    ||||||||||||||| || |  |||||| |||| ||| |||||||  |||||||| ||||  ||||||||||||  ||||| ||| | ||||||||||||    
T  38966229 tttaaccgaaccagctatctcgcgccgactctttctcctgtactcggtgtatgaacctcccttttcacatatcaaagtaaccaatgcgcttcttccattg 38966130  T
Q  190 tcacc----------ataccaatgacggttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgct 279  Q
     ||||           || |||| || || | ||| || |||||||| | |||||||||||| |||||||| ||||||||||| ||  ||||||| ||      
T  38966129 ccaccgttatcggatttaacaataacagtggaaaaaccgagcttcctagctttctctcgaactcactccaacaaatcattccgtgttgcaaacttatgtg 38966030  T
Q  280 tggtggtaaaatcttctccatgatcaattcaaacaac------aggaggaggagcatcatctacttttgcatcacctaaggaaatatcaagtttcg 369  Q
    | |||||||||| |||||  |||||||| ||||||||      ||||||| |||||||||||||||| ||||| | ||| ||||| ||||||||||    
T  38966029 tagtggtaaaatgttctcgctgatcaatacaaacaacaggaataggaggatgagcatcatctactttcgcatcgcttaaagaaatttcaagtttcg 38965934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 291
Target Start/End: Original strand, 13850346 - 13850557
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    ||||||||||||||| || |  |||||| |||| |||||||||||  |||||||| | || ||||||||||||   ||||||| ||| ||||||||||||    
T  13850346 tttaaccgaaccagctatctcgcgccgactctttctcttgtactcggtgtatgaaccacccctttcacatatcgaagtaacaactacgcttcttccattg 13850445  T
Q  190 tcacca----------taccaatgacggttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgct 279  Q
     |||||          ||||||| || || | ||| ||||||||||| | |||||||| |||||||||||| ||||||||||  ||  ||||||| || |    
T  13850446 ccaccattatcggatttaccaataacagtggaaaaaccaagcttcctagctttctctccaacccactccaacaaatcattccatgttgcaaacttgtgtt 13850545  T
Q  280 tggtggtaaaat 291  Q
    | ||||||||||    
T  13850546 tagtggtaaaat 13850557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 20235942 - 20236023
Alignment:
Q  216 ccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaaatcttctc 297  Q
    ||||||||||| | |||||||| |||||||||||| ||||||||||| ||  ||||||| || || |||||||||| |||||    
T  20235942 ccaagcttcctagctttctctctaacccactccaacaaatcattccgtgttgcaaacttgtgtttagtggtaaaatgttctc 20236023  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 31045294 - 31045343
Alignment:
Q  125 tcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaat 174  Q
    ||||||||||| |||||||| ||||||||| |||||||||  ||||||||    
T  31045294 tcttgtactccgtgtatgaacctcctcttttacatatcacaataacaaat 31045343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 34833657 - 34833738
Alignment:
Q  216 ccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaaatcttctc 297  Q
    |||||||| || | |||||||| |||||||| ||| ||||||||||| ||  ||||||| || || |||||||||| |||||    
T  34833657 ccaagctttctagctttctctccaacccacttcaacaaatcattccgtgttgcaaacttgtgtttagtggtaaaatgttctc 34833738  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 34833551 - 34833635
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaat 174  Q
    ||||||||||||||| || |  | |||| |||| ||||| |||||  |||||||| |||| |||||||||||||  |||||||||    
T  34833551 tttaaccgaaccagctatctcgcaccgactctttctcttatactcggtgtatgaacctcccctttcacatatcaaagtaacaaat 34833635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 314
Target Start/End: Complemental strand, 754683 - 754448
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttc-ctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccatt 188  Q
    ||||||||||||||| || | ||||||| ||||  |||||||||||  |||||||| ||||  ||||||||||||  ||||||||| | |||||||||||    
T  754683 tttaaccgaaccagctatctcacgccgactcttttctcttgtactcggtgtatgaacctcccatttcacatatcaaagtaacaaatgcgcttcttccatt 754584  T
Q  189 gtcacca----------taccaatgacggttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgc 278  Q
    | |||||          ||||||| || || | ||| ||||||||||  | ||||||||||||||||||||| |||||||||||  |  ||||||| ||     
T  754583 gccaccattatcggatttaccaataacagtggaaaaaccaagcttccaagctttctctcgaacccactccaacaaatcattccgttttgcaaacttgtgt 754484  T
Q  279 ttggtggtaaaatcttctccatgatcaattcaaaca 314  Q
    || |||||||||| |||||  || ||||| ||||||    
T  754483 ttagtggtaaaatgttctcgctggtcaatacaaaca 754448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 317
Target Start/End: Original strand, 23710152 - 23710389
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    |||||| |||||||| || |  |||||| |||| |||||||||||  |||||||| |||| ||||||||||||| |||||||||  | ||||||||||||    
T  23710152 tttaacagaaccagctatctcgcgccgactctttctcttgtactcggtgtatgaacctcccctttcacatatcaaggtaacaaaggcgcttcttccattg 23710251  T
Q  190 tcacc----------ataccaatgacggttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgct 279  Q
     ||||           ||||||| || || | ||| || |||||||| | ||||||| ||||||||||||| |||||||| || ||  ||||||| ||      
T  23710252 ccaccgttatcggatttaccaataacagtggaaaaaccgagcttcctagctttctcttgaacccactccaacaaatcatttcgtgttgcaaacttgtgtg 23710351  T
Q  280 tggtggtaaaatcttctccatgatcaattcaaacaaca 317  Q
    | |||||||||| |||||  |||||||| |||||||||    
T  23710352 tagtggtaaaatgttctcgctgatcaatacaaacaaca 23710389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 40455932 - 40456042
Alignment:
Q  207 gttgtaaatccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaaatcttctccatgatcaa 306  Q
    |||| |||||| | |||||||| || |||| ||||||||||||| ||||  || ||||||||||||||||| ||||||||||| | ||||| ||||||||    
T  40455932 gttgaaaatcctaacttccttgcttcctcttgaacccactccaacaaattgtttcgcgtaacaaacttttgtttggtggtaaactgttctcgatgatcaa 40456031  T
Q  307 ttcaaacaaca 317  Q
    |  ||||||||    
T  40456032 tagaaacaaca 40456042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 9140144 - 9140248
Alignment:
Q  90 tttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    |||| |||||||||| || |  |||||| |||| |||||||||||  ||||||||||||| |||||||||||||  |||||||||   ||||||||||||    
T  9140144 tttagccgaaccagctatctcgcgccgactctttctcttgtactcggtgtatgaaactcccctttcacatatcaaagtaacaaatgagcttcttccattg 9140243  T
Q  190 tcacc 194  Q
     ||||    
T  9140244 ccacc 9140248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 9173497 - 9173578
Alignment:
Q  216 ccaagcttccttgttttctctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaaatcttctc 297  Q
    ||||||||||| | |||||||| |||||||||||| |||||||| || ||  ||||||| || || |||||||||| |||||    
T  9173497 ccaagcttcctagatttctctccaacccactccaacaaatcatttcgtgttgcaaacttgtgtttagtggtaaaatgttctc 9173578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 23710430 - 23710480
Alignment:
Q  319 gaggaggagcatcatctacttttgcatcacctaaggaaatatcaagtttcg 369  Q
    ||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||    
T  23710430 gaggaggagcatcctctactttcgcatcgcctaaagaaatttcaagtttcg 23710480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 368
Target Start/End: Complemental strand, 15889602 - 15889458
Alignment:
Q  230 tttctctcgaacccactccaataaatcattccgcgtaacaaacttttgcttggtggtaaaatcttctccatgatcaattcaaacaaca------ggagga 323  Q
    ||||||||||||  ||||||| ||||||||  | ||| ||||||| ||  | |||||||||| |||||  |||||||| |||||||||      ||||||    
T  15889602 tttctctcgaacggactccaacaaatcattatgtgtagcaaacttgtgtgtagtggtaaaatgttctcgttgatcaatacaaacaacaagaataggagga 15889503  T
Q  324 ggagcatcatctacttttgcatcacctaaggaaatatcaagtttc 368  Q
    |||||||| |||||||||||||| ||||| ||||| |||||||||    
T  15889502 ggagcatcctctacttttgcatcgcctaaagaaatttcaagtttc 15889458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 15890993 - 15890912
Alignment:
Q  113 gccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattgtcacc 194  Q
    ||||| |||| |||||||||||  ||||| || |||| |||||||||||||  ||||||||| | ||||||| |||||||||    
T  15890993 gccgactctttctcttgtactcggtgtataaacctcccctttcacatatcaaagtaacaaatgcgcttcttcaattgtcacc 15890912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 41257011 - 41257092
Alignment:
Q  113 gccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattgtcacc 194  Q
    ||||| |||| ||||||||| |  |||||||| ||||||||||||||||||  |||||||||   |||||||||||| ||||    
T  41257011 gccgactctttctcttgtacacggtgtatgaacctcctctttcacatatcaaagtaacaaatgtgcttcttccattgccacc 41257092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 19216134 - 19216051
Alignment:
Q  91 ttaaccgaaccagcaattttacgccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaat 174  Q
    |||||||||||||| || |  |||||| |||| |||||||||||  |||||||| |||| |||||||||| ||  |||||||||    
T  19216134 ttaaccgaaccagctatctcgcgccgactctttctcttgtactcggtgtatgaacctcccctttcacataccaaagtaacaaat 19216051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 34256100 - 34256163
Alignment:
Q  24 gggaaatgcaaacatgtgcccttaagacacgtgttaataaacttaatgtggaaatttcttcttg 87  Q
    ||||||||| |||||||||||||||| ||| ||||||| ||||| |||| ||||||||||||||    
T  34256100 gggaaatgctaacatgtgcccttaaggcacatgttaatgaacttgatgtagaaatttcttcttg 34256163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 46223844 - 46223769
Alignment:
Q  114 ccgagtcttcctcttgtactccttgtatgaaactcctctttcacatatcacggtaacaaatacacttcttccattg 189  Q
    |||| |||| |||||||||||  |||||||| | ||||||||||||||||  |||||||||   ||||||||||||    
T  46223844 ccgactctttctcttgtactcggtgtatgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattg 46223769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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