View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17236_low_5 (Length: 211)
Name: NF17236_low_5
Description: NF17236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17236_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 46805946 - 46806148
Alignment:
| Q |
1 |
agtcatggcaagagatcaagattcactcaattgggagaaggaacttaaacaggcagaagaagagctccagagaatcaatgagcaaatgttgtctgcaaag |
100 |
Q |
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| T |
46805946 |
agtcatggcaagagatcaagattcactcaattgggagaaggaacttaaacaggcagaagaagagctccagagaatcaatgagcaaatgttgtctgcaaag |
46806045 |
T |
|
| Q |
101 |
gatctcaaatctaaactggaagcagcctctggtttgctgcttgatttgaaagctaaattaactgtttatatggaatcaaagttaaagcaagaaggtgatg |
200 |
Q |
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| T |
46806046 |
gatctcaaatctaaactggaagcagcctctggtttgctgcttgatttgaaagctaaattaactgtttatatggaatcaaagttaaagcaagaaggtgatg |
46806145 |
T |
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| Q |
201 |
atg |
203 |
Q |
| |
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||| |
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| T |
46806146 |
atg |
46806148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 5888936 - 5888734
Alignment:
| Q |
1 |
agtcatggcaagagatcaagattcactcaattgggagaaggaacttaaacaggcagaagaagagctccagagaatcaatgagcaaatgttgtctgcaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||| ||||| | |||| |||| || | | | ||||| | |||| |||| ||| | | |
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| T |
5888936 |
agtcatggcaagagatcaagattctctcaattgggagagggaactaaaacaagaagaacaagaactagaaaaactcaatcaaaaaattttgtttgctatg |
5888837 |
T |
|
| Q |
101 |
gatctcaaatctaaac-tggaagcagcctctggtttgctgcttgatttgaaagctaaattaactgtttatatggaatcaaagttaaagcaagaaggtgat |
199 |
Q |
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||||| |||||||||| | | | ||| |||| ||||| ||||||||||||||| | |||| || |||||||||||||||| ||| |||||||| ||| |
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| T |
5888836 |
gatcttaaatctaaacatagta-aagcttctgcgttgcttcttgatttgaaagctgagttaaatgcctatatggaatcaaagtcaaaccaagaaggagat |
5888738 |
T |
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| Q |
200 |
gatg |
203 |
Q |
| |
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|||| |
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| T |
5888737 |
gatg |
5888734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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